Clone Sequence Records
BS13617.5prime Sequence
644 bp (589 high quality bases) assembled on 2006-10-13
> BS13617.5prime
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCCGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAG
BS13617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-PA | 1068 | CG4406-RA | 1..628 | 17..644 | 3115 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-RA | 1203 | CG4406-RA | 69..696 | 17..644 | 3125 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2008708..2009296 | 605..17 | 2930 | 99.8 | Minus |
| X | 23542271 | X | 2008591..2008632 | 644..603 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:39:12 has no hits.
BS13617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:22 Download gff for
BS13617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-PA | 1..628 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:36:49 Download gff for
BS13617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 63..696 | 11..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:33 Download gff for
BS13617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 63..696 | 11..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:33 Download gff for
BS13617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2008591..2008631 | 604..644 | 100 | <- | Minus |
| X | 2008710..2009302 | 11..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:36:49 Download gff for
BS13617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1902624..1902664 | 604..644 | 100 | <- | Minus |
| arm_X | 1902743..1903335 | 11..603 | 99 | | Minus |
BS13617.complete Sequence
1100 bp assembled on 2008-08-14
GenBank Submission: KX800668
> BS13617.complete
GAAGTTATCAGTCGACATGTTTAATATTATGCTTGTTAAATTTGTTGTCA
TCTTTGCCCTGATCCTCGCCAGCTGTCGGGTGGAGGCGGATAACACCTCG
GTGTTGCCGGAGGGCTTTGTGGACGCCGCTCAGCGCTCTACACACACGAA
CAACTGGGCGGTGCTGGTGGACGCATCGAGATTCTGGTTCAACTACCGGC
ATGTGGCCAATGTGCTGTCTATCTACCGCTCGGTAAAGAGACTGGGCATT
CCTGACTCCCAGATCATACTGATGATCGCCGACGACATGGCCTGCAATGC
TAGGAACCCACGGCCCGGCCAGGTGTACAATAACGCCAACCAGCACATCA
ATGTGTACGGAGACGATGTAGAGGTGGATTACCGCGGCTACGAGGTGACA
GTTGAGAACTTTGTGCGTCTGCTAACTGGGCGCACCCAGAACGGCACGGC
GCGCTCGAAGAAGCTGCTCTCGGACGCGGGCAGCAATGTGCTCATCTACC
TAACCGGACACGGCGGCGATGGATTCCTCAAGTTCCAGGACTCGGAGGAG
ATAACCAGCCAGGAGTTGGCCGACGGCATCCAACAGATGTGGGAGAAAAA
GCGGTACAATGAGCTATTCTTCATGGTGGACACTTGCCAAGCAGCTTCGC
TCTATGAGAAGTTCACCTCGCCGAATGTCCTGGCAGTGGCTAGCAGTCTT
GTTGGCGAGGATTCCTTATCGCACCATGTGGATCCATCGATTGGAGTCTA
CATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGAGAAGGTGC
AGCCCTTTAGCAAACGGACCATAGGCGAATTTCTGCAAGTGTGCCCCAAG
AGAGTGTGCATTTCGACAGTGGGAGTGCGCAAGGATCTGTACCCCCGGGA
TCCGCACAAGGTGCCCATCACAGACTTCTTTGGAGCCATACGTCCCACAC
GGGTATCCACCGATCGCATCAATGTGACCTTGGCCAATGAGGATGATTTC
ATTTTCGACAAAGATAAGATGGTGACCAAAAAGCCCTTCAAAATCGTGAT
GGAGTCACAGTTTCCTTCCGAGCTTTTTAAATAGAAGCTTTCTAGACCAT
BS13617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-RA | 1068 | CG4406-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-RA | 1203 | CG4406-RA | 69..1136 | 17..1084 | 5340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2008708..2009296 | 605..17 | 2945 | 100 | Minus |
| X | 23542271 | X | 2008129..2008289 | 993..833 | 805 | 100 | Minus |
| X | 23542271 | X | 2008514..2008632 | 721..603 | 595 | 100 | Minus |
| X | 23542271 | X | 2008351..2008462 | 832..721 | 560 | 100 | Minus |
| X | 23542271 | X | 2007978..2008068 | 1084..994 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1688..1772 | 766..854 | 128 | 65.2 | Plus |
BS13617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:31 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 42..1118 | 11..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:13 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 75..1130 | 23..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:27 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 54..1109 | 23..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:46 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 75..1130 | 23..1078 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:46 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2008351..2008461 | 722..832 | 100 | <- | Minus |
| X | 2008514..2008631 | 604..721 | 100 | <- | Minus |
| X | 2007984..2008068 | 994..1078 | 100 | <- | Minus |
| X | 2008129..2008289 | 833..993 | 100 | <- | Minus |
| X | 2008710..2009290 | 23..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:13 Download gff for
BS13617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1902017..1902101 | 994..1078 | 100 | <- | Minus |
| arm_X | 1902162..1902322 | 833..993 | 100 | <- | Minus |
| arm_X | 1902384..1902494 | 722..832 | 100 | <- | Minus |
| arm_X | 1902547..1902664 | 604..721 | 100 | <- | Minus |
| arm_X | 1902743..1903323 | 23..603 | 100 | | Minus |
BS13617.pep Sequence
Translation from 16 to 1083
> BS13617.pep
MFNIMLVKFVVIFALILASCRVEADNTSVLPEGFVDAAQRSTHTNNWAVL
VDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRP
GQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRLLTGRTQNGTARSKKL
LSDAGSNVLIYLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNEL
FFMVDTCQAASLYEKFTSPNVLAVASSLVGEDSLSHHVDPSIGVYMIDRY
TYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTVGVRKDLYPRDPHKVP
ITDFFGAIRPTRVSTDRINVTLANEDDFIFDKDKMVTKKPFKIVMESQFP
SELFK*
BS13617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-PA | 355 | CG4406-PA | 1..355 | 1..355 | 1845 | 100 | Plus |
