Clone Sequence Records
BS13618.3prime Sequence
786 bp (617 high quality bases) assembled on 2006-10-13
> BS13618.3prime
ATGGTCTAGAAAGCTTTCAGTACTGGACGAGTGCCTCGCGGGCCAACTTT
GCCCAGATGGTGCCAACTGGATGGACAACCACTTTGCGCTTTCCCTTAAA
GGTCAATGACTCGTAGTGGTAGCCGTCGATAATCTTTGCGGAGTTAAAGT
TGCAAACGAAGGGCAGAGTGATTTCGTTCAGATTAACGTAGTAACAATTA
ATCGTGAAGATCAGCGGACTTAATCGGGCCACCAGTTCGTAGGCGGCTGC
CAGTTTTTCGTTCCAAATGCACACAGAGGTAAAGTTAAGTGGTTCCTTAG
CCTGCAGCTCAACGGCCTCCTTCATGGTTCGAAAGGTGTGCAGGGTTATG
ACCCCGGTGGGTCCATCAGCCAAGTAACGATGGCTAAGGTCGTAGACCAG
CATGGGACTAGCATTTTCTGGAACAGTCTTGGGATTTCCAACTATTCTCT
TTGCCTGTAAGTGACCTATTCTCTCCAGTGTCATTATATAAACCGGATGC
CCGGAGATATCCGTGCTCAACGGTTCCAGGCGATCCCTTATGCGATCCAC
GAACTCCTCCAATATGGATTCCTGCAAGAAAAGAGTGGCCACCGCATTGC
AGGCGAAGGGATCGTGAAGAGACTCAACGAGATAGTGCAAAGCGCAATTG
ATGTCTCCATCTTCGCAGAGAATCATCAGCCGCGGCGAGTTCCACTGGTA
TTTAACTTGCACTTCCGGTTCCGGTTCATCTTCACTCATTGAACTCGATC
GGGAATGGTATGAAAGCCTAAGCACCTTCTTTGGCT
BS13618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 969 | CG2336-RA | 200..969 | 786..17 | 3825 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 333..1102 | 786..17 | 3835 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581246..6582015 | 786..17 | 3835 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:08:25 has no hits.
BS13618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:24 Download gff for
BS13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 200..969 | 17..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:44 Download gff for
BS13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 333..1108 | 9..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:18 Download gff for
BS13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 333..1108 | 9..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:18 Download gff for
BS13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581246..6582021 | 9..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:44 Download gff for
BS13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406968..2407743 | 9..786 | 99 | | Minus |
BS13618.5prime Sequence
738 bp (684 high quality bases) assembled on 2006-10-13
> BS13618.5prime
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCCGTGAGCTGCAA
GCTAAGGAACAACTTAACTTTACCTCTGTGTGCATTTG
BS13618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 969 | CG2336-RA | 1..722 | 17..738 | 3510 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 134..855 | 17..738 | 3550 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581073..6581768 | 43..738 | 3420 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:52:19 has no hits.
BS13618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:24 Download gff for
BS13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 1..722 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:07 Download gff for
BS13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..855 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:16 Download gff for
BS13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..855 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:16 Download gff for
BS13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581073..6581768 | 43..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:07 Download gff for
BS13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406795..2407490 | 43..738 | 99 | | Plus |
BS13618.complete Sequence
1001 bp assembled on 2006-11-01
GenBank Submission: FJ637490
> BS13618.complete
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACGAGTCATTGAC
CTTTAAGGGAAAGCGCAAAGTGGTTGTCCATCCAGTTGGCACCATCTGGG
CAAAGTTGGCCCGCGAGGCACTCGTCCAGTACTGAAAGCTTTCTAGACCA
T
BS13618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 969 | CG2336-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 134..1102 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581073..6582015 | 43..985 | 4715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:18:57 has no hits.
BS13618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:43 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:11 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 64..1038 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:44 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1101 | 17..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:43 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 64..1038 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:12 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1101 | 17..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:12 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581073..6582014 | 43..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:44 Download gff for
BS13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406795..2407736 | 43..984 | 100 | | Plus |
BS13618.pep Sequence
Translation from 16 to 984
> BS13618.pep
MMYNNRPTAISLEEEVQYIYKYPLLPTPLIDYGFIYNLVCNKPRDVSVPL
ILEIETEFKSKDSAPEKPKKVPRLSYHSRSSSMSEDEPEPEVQVKYQWNS
PRLMILCEDGDINCALHYLVESLHDPFACNAVATLFLQESILEEFVDRIR
DRLEPLSTDISGHPVYIMTLERIGHLQAKRIVGNPKTVPENASPMLVYDL
SHRYLADGPTGVITLHTFRTMKEAVELQAKEPLNFTSVCIWNEKLAAAYE
LVARLSPLIFTINCYYVNLNEITLPFVCNFNSAKIIDGYHYESLTFKGKR
KVVVHPVGTIWAKLAREALVQY*
BS13618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 322 | CG2336-PA | 1..322 | 1..322 | 1693 | 100 | Plus |
CG12516-PB | 300 | CG12516-PB | 30..298 | 45..311 | 559 | 41.3 | Plus |
CG15717-PE | 252 | CG15717-PE | 38..250 | 97..311 | 531 | 48.8 | Plus |
CG15717-PC | 252 | CG15717-PC | 38..250 | 97..311 | 531 | 48.8 | Plus |
CG15717-PA | 252 | CG15717-PA | 38..250 | 97..311 | 531 | 48.8 | Plus |