Clone BS13618 Report

Search the DGRC for BS13618

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG2336-RA
Protein status:BS13618.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13618.3prime Sequence

786 bp (617 high quality bases) assembled on 2006-10-13

> BS13618.3prime
ATGGTCTAGAAAGCTTTCAGTACTGGACGAGTGCCTCGCGGGCCAACTTT
GCCCAGATGGTGCCAACTGGATGGACAACCACTTTGCGCTTTCCCTTAAA
GGTCAATGACTCGTAGTGGTAGCCGTCGATAATCTTTGCGGAGTTAAAGT
TGCAAACGAAGGGCAGAGTGATTTCGTTCAGATTAACGTAGTAACAATTA
ATCGTGAAGATCAGCGGACTTAATCGGGCCACCAGTTCGTAGGCGGCTGC
CAGTTTTTCGTTCCAAATGCACACAGAGGTAAAGTTAAGTGGTTCCTTAG
CCTGCAGCTCAACGGCCTCCTTCATGGTTCGAAAGGTGTGCAGGGTTATG
ACCCCGGTGGGTCCATCAGCCAAGTAACGATGGCTAAGGTCGTAGACCAG
CATGGGACTAGCATTTTCTGGAACAGTCTTGGGATTTCCAACTATTCTCT
TTGCCTGTAAGTGACCTATTCTCTCCAGTGTCATTATATAAACCGGATGC
CCGGAGATATCCGTGCTCAACGGTTCCAGGCGATCCCTTATGCGATCCAC
GAACTCCTCCAATATGGATTCCTGCAAGAAAAGAGTGGCCACCGCATTGC
AGGCGAAGGGATCGTGAAGAGACTCAACGAGATAGTGCAAAGCGCAATTG
ATGTCTCCATCTTCGCAGAGAATCATCAGCCGCGGCGAGTTCCACTGGTA
TTTAACTTGCACTTCCGGTTCCGGTTCATCTTCACTCATTGAACTCGATC
GGGAATGGTATGAAAGCCTAAGCACCTTCTTTGGCT

BS13618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 969 CG2336-RA 200..969 786..17 3825 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 333..1102 786..17 3835 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581246..6582015 786..17 3835 99.9 Minus
Blast to na_te.dros performed on 2015-01-31 10:08:25 has no hits.

BS13618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:24 Download gff for BS13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 200..969 17..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:44 Download gff for BS13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 333..1108 9..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:18 Download gff for BS13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 333..1108 9..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:18 Download gff for BS13618.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6581246..6582021 9..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:44 Download gff for BS13618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406968..2407743 9..786 99   Minus

BS13618.5prime Sequence

738 bp (684 high quality bases) assembled on 2006-10-13

> BS13618.5prime
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCCGTGAGCTGCAA
GCTAAGGAACAACTTAACTTTACCTCTGTGTGCATTTG

BS13618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 969 CG2336-RA 1..722 17..738 3510 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 134..855 17..738 3550 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581073..6581768 43..738 3420 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:52:19 has no hits.

BS13618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:24 Download gff for BS13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 1..722 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:07 Download gff for BS13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..855 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:16 Download gff for BS13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..855 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:16 Download gff for BS13618.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6581073..6581768 43..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:07 Download gff for BS13618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406795..2407490 43..738 99   Plus

BS13618.complete Sequence

1001 bp assembled on 2006-11-01

GenBank Submission: FJ637490

> BS13618.complete
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACGAGTCATTGAC
CTTTAAGGGAAAGCGCAAAGTGGTTGTCCATCCAGTTGGCACCATCTGGG
CAAAGTTGGCCCGCGAGGCACTCGTCCAGTACTGAAAGCTTTCTAGACCA
T

BS13618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 969 CG2336-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 134..1102 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581073..6582015 43..985 4715 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:18:57 has no hits.

BS13618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:43 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:11 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 64..1038 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:44 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1101 17..984 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:43 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 64..1038 17..993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:12 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1101 17..984 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:12 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6581073..6582014 43..984 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:44 Download gff for BS13618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406795..2407736 43..984 100   Plus

BS13618.pep Sequence

Translation from 16 to 984

> BS13618.pep
MMYNNRPTAISLEEEVQYIYKYPLLPTPLIDYGFIYNLVCNKPRDVSVPL
ILEIETEFKSKDSAPEKPKKVPRLSYHSRSSSMSEDEPEPEVQVKYQWNS
PRLMILCEDGDINCALHYLVESLHDPFACNAVATLFLQESILEEFVDRIR
DRLEPLSTDISGHPVYIMTLERIGHLQAKRIVGNPKTVPENASPMLVYDL
SHRYLADGPTGVITLHTFRTMKEAVELQAKEPLNFTSVCIWNEKLAAAYE
LVARLSPLIFTINCYYVNLNEITLPFVCNFNSAKIIDGYHYESLTFKGKR
KVVVHPVGTIWAKLAREALVQY*

BS13618.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 322 CG2336-PA 1..322 1..322 1693 100 Plus
CG12516-PB 300 CG12516-PB 30..298 45..311 559 41.3 Plus
CG15717-PE 252 CG15717-PE 38..250 97..311 531 48.8 Plus
CG15717-PC 252 CG15717-PC 38..250 97..311 531 48.8 Plus
CG15717-PA 252 CG15717-PA 38..250 97..311 531 48.8 Plus