Clone Sequence Records
BS13619.complete Sequence
1232 bp assembled on 2009-12-07
GenBank Submission: KX800557
> BS13619.complete
GAAGTTATCAGTCGACATGAACTTCATCTCGTTCAGCGTAATTAGCCGCT
TTGACTTTTTTTGGTTGGACGTGCTTAAGCAATTGGATCTGAAGTCTCGC
ATTAGCTTTGCAGCCAGTTGCGATATGTTTGAGAACATCTATGTTAGGAG
TTCTCCTCTACGCCTGAGCCGCGTAGTTAATTTGGAGGAAATGATTGAGT
TCTCATTGCTTGAAACCAAACTATTTGTGGAACTTTCGGGTTCTGACATT
GAGATTATACGCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGA
TTTCATACGCCTGATGTCGATCCGGCTAACGAAGGTGAATGAGATTGCTC
TCGAGGGATTCCAACTCACGCAATACAAGTGGTTCAACGCTCCCGAAACC
AGCTTCAGCAACTTGACCTATGTTAGCTTGCGTCGTTGTCAGCTCAATGA
TGAGAACCTTGTGGGCTGGGAGTTCTTGACTCATCTGGAGACATTGGATC
TGAGATACAACGATCGATTGACTGGGAGCTGTTTGATGAGTCTTCCAACT
TCGTTGTTGTCCCTTTATATAACCGGCTGCCGGAATTTGTGCCCGAATCA
ACTAATATTCCTGAACCGTATACCACGACTACGCGAGCTGCGTGCCTCGG
ACCTGATGCCCGGCGGGCACTGGCATATCTATCGTGACCTGGTGCTGGCT
TGTCCCTTGCTGGTGATGGTCGAGATATCAATTTGCTCCCTAAACCGGGA
TGAGTATAGGCTGGGTGAGCTGCGCTATCTGCAGTCGTTGGTCATTAAAG
CTCACTCCACAGACACAATTCGCTGTAAGGTCAGCGACTGGATGCTGATT
TCCCTATTGGATGTGCCCTTTCTGCGAAACCTGATGTTTTCAGATGCACC
GAGTGGCTTTGTTAGCGCAAATGCCCTGTCGATTATATCGAGATTTCGGC
AGCTGCGTGTTCTGAAAATGCCGAATCAGCCATACCGGCCCAATGACCTC
TTAAGATTGAGGAATCTAACTTTTCTTGAGACGCTGGACCTCAGCAATTC
ACCCTATATCACTAATGAGGTTGTCATCGAACTGGTCATAGGAATTCCCA
ACCTTAGTGTGTTAATAGTCCAAGGATGTCCTCTGCTCACAAATCGTGTA
TACCTTGATGCAGAATTGGCCAGTAAGAAAAGGAGCAATGGGAACATGGT
CAAGGTGCAGCTATAGAAGCTTTCTAGACCAT
BS13619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1200 | CG15056-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 105..1305 | 17..1217 | 6005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18415608..18416792 | 33..1217 | 5925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:39:42 has no hits.
BS13619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:49 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 1..1200 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:17 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 7..1206 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:03 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 7..1206 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:00 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 7..1206 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:55 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 105..1304 | 17..1216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:55 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18415519..18415538 | 17..36 | 100 | -> | Plus |
| X | 18415612..18416791 | 37..1216 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:03 Download gff for
BS13619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18309552..18309571 | 17..36 | 100 | -> | Plus |
| arm_X | 18309645..18310824 | 37..1216 | 100 | | Plus |
BS13619.3prime Sequence
588 bp (508 high quality bases) assembled on 2006-10-13
> BS13619.3prime
ATGGTCTAGAAAGCTTCTATAGCTGCACCTTGACCATGTTCCCATTGCTC
CTTTTCTTACTGGCCAATTCTGCATCAAGGTATACACGATTTGTGAGCAG
AGGACATCCTTGGACTATTAACACACTAAGGTTGGGAATTCCTATGACCA
GTTCGATGACAACCTCATTAGTGATATAGGGTGAATTGCTGAGGTCCAGC
GTCTCAAGAAAAGTTAGATTCCTCAATCTTAAGAGGTCATTGGGCCGGTA
TGGCTGATTCGGCATTTTCAGAACACGCAGCTGCCGAAATCTCGATATAA
TCGACAGGGCATTTGCGCTAACAAAGCCACTCGGTGCATCTGAAAACATC
AGGTTTCGCAGAAAGGGCACATCCAATAGGGAAATCAGCATCCAGTCGCT
GACCTTACAGCGAATTGTGTCTGTGGAGTGAGCTTTAATGACCAACGACT
GCAGATAGCGCAGCTCACCCAGCCTATACTCATCCCGGTTTAGGGAGCAA
ATTGATATCTCGACCATCACCAGCAAGGGACAAGCCAGCACCAGGTCACG
ATAGATATGCCAGTGCCCGCCCGGCATCAGGTCCGAGG
BS13619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 1200 | CG15056-RA | 629..1200 | 588..17 | 2835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 733..1305 | 588..16 | 2850 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18416220..18416792 | 588..16 | 2850 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:13:13 has no hits.
BS13619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:25 Download gff for
BS13619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 629..1200 | 17..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:02 Download gff for
BS13619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 635..1213 | 8..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:27 Download gff for
BS13619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 733..1311 | 8..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:27 Download gff for
BS13619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18416220..18416798 | 8..588 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:02 Download gff for
BS13619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18310253..18310831 | 8..588 | 99 | | Minus |
BS13619.5prime Sequence
617 bp (542 high quality bases) assembled on 2006-10-13
> BS13619.5prime
GAAGTTATCAGTCGACATGAACTTCATCTCGTTCAGCGTAATTAGCCGCT
TTGACTTTTTTTGGTTGGACGTGCTTAAGCAATTGGATCTGAAGTCTCGC
ATTAGCTTTGCAGCCAGTTGCGATATGTTTGAGAACATCTATGTTAGGAG
TTCTCCTCTACGCCTGAGCCGCGTAGTTAATTTGGAGGAAATGATTGAGT
TCTCATTGCTTGAAACCAAACTATTTGTGGAACTTTCGGGTTCTGACATT
GAGATTATACGCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGA
TTTCATACGCCTGATGTCGATCCGGCTAACGAAGGTGAATGAGATTGCTC
TCGAGGGATTCCAACTCACGCAATACAAGTGGTTCAACGCTCCCGAAACC
AGCTTCAGCAACTTGACCTATGTTAGCTTGCGTCGTTGTCAGCTCAATGA
TGAGAACCTTGTGGGCTGGGAGTTCTTGACTCATCTGGAGACATTGGATC
TGAGATACAACGATCGATTGACTGGGAGCTGTTTGATGAGTCTTCCAACT
TCGTTGTTGTCCCTTTATATAACCGGCTGCCGGAATTTGTGCCCGAATCA
ACTAATATTCCTGAACC
BS13619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 1200 | CG15056-RA | 1..601 | 17..617 | 3005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-RA | 1424 | CG15056-RA | 105..705 | 17..617 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18415608..18416192 | 33..617 | 2925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:13:25 has no hits.
BS13619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:25 Download gff for
BS13619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-PA | 1..601 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:05 Download gff for
BS13619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 4..607 | 15..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:30 Download gff for
BS13619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15056-RA | 105..705 | 17..617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:30 Download gff for
BS13619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18415519..18415538 | 17..36 | 100 | -> | Plus |
| X | 18415612..18416192 | 37..617 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:05 Download gff for
BS13619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18309552..18309571 | 17..36 | 100 | -> | Plus |
| arm_X | 18309645..18310225 | 37..617 | 100 | | Plus |
BS13619.pep Sequence
Translation from 16 to 1215
> BS13619.pep
MNFISFSVISRFDFFWLDVLKQLDLKSRISFAASCDMFENIYVRSSPLRL
SRVVNLEEMIEFSLLETKLFVELSGSDIEIIRGGPHTPMFSHFEDFIRLM
SIRLTKVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQLNDENLVG
WEFLTHLETLDLRYNDRLTGSCLMSLPTSLLSLYITGCRNLCPNQLIFLN
RIPRLRELRASDLMPGGHWHIYRDLVLACPLLVMVEISICSLNRDEYRLG
ELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAPSGFVS
ANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNSPYITN
EVVIELVIGIPNLSVLIVQGCPLLTNRVYLDAELASKKRSNGNMVKVQL*
BS13619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15056-PA | 399 | CG15056-PA | 1..399 | 1..399 | 2045 | 100 | Plus |
| CG14891-PA | 495 | CG14891-PA | 118..481 | 13..378 | 435 | 33.2 | Plus |
