Clone Sequence Records
BS13620.3prime Sequence
645 bp (645 high quality bases) assembled on 2006-10-13
> BS13620.3prime
ATGGTCTAGAAAGCTTTTAATTTTTTGAGACGCGGCATAGCTGCATGTCT
GCGGAGATCTTCTTCACCAGAGGAGTAATCTCCTTGAAGGACTTGTTGTT
CTTGTCCCCCAGCAGATTAAATATCACACTCTCGGAAGTTGCTATGTTGC
AGCCAATGTGACGCAGGCGCTCCAAGGCCAAGTCCCGATCCTGATTGTGA
CGCGACGCACAGCAGTCGGCCACCAGCCAGACATCGATTTCATCATTTAC
CAGGTCGAAGGCCGTCTGCTCCACACAGACGTGTGTCTCCAGACCGAAAA
GCACCACCGTCTTGGGCTTGCCACCGAAGATATCAGTCATACTCTTACGT
ACCGGCTCCACCAGCATAGAGAACATGGTCTTGGAAATATTGGCACAGGC
ATGCTTGATGTCCAACTCACAAACGGTCTTGCCCAGCCTCTCGGGATACT
GCTCGGTGACCAGCAGTGGCACTTGGAAGACCTTGCCGGCTGCCAGCAGT
TTAGTAGTGTTTTCGATGAGCGAACTTAGCAGCGGAATGGCCGGCTTGAA
CTTCTCCTGCACGTCGCACAGCATGAAGAGCGTTTTCGAGGGCACCAGGC
GGTACAAAGCTGGTCCTCTGACTTTGCTCATGTCGACTGATAACT
BS13620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 615 | CG11333-RA | 1..615 | 631..17 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..664 | 632..17 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464083 | 288..17 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 31463541..31463751 | 497..287 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 31463349..31463484 | 632..497 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:52 has no hits.
BS13620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:25 Download gff for
BS13620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 17..631 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:46 Download gff for
BS13620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..622 | 13..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:37 Download gff for
BS13620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 43..666 | 13..641 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:37 Download gff for
BS13620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463343..31463484 | 497..641 | 97 | -> | Minus |
3R | 31463542..31463751 | 287..496 | 100 | -> | Minus |
3R | 31463814..31464085 | 13..286 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:46 Download gff for
BS13620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289065..27289206 | 497..641 | 97 | -> | Minus |
arm_3R | 27289536..27289807 | 13..286 | 99 | | Minus |
arm_3R | 27289264..27289473 | 287..496 | 100 | -> | Minus |
BS13620.5prime Sequence
645 bp (645 high quality bases) assembled on 2006-10-13
> BS13620.5prime
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATTAAAAGCTTTCTAGACC
BS13620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 615 | CG11333-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..664 | 16..631 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464083 | 360..631 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 31463541..31463751 | 151..361 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 31463349..31463484 | 16..151 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:38:47 has no hits.
BS13620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:26 Download gff for
BS13620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:32 Download gff for
BS13620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..622 | 13..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:40 Download gff for
BS13620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 43..666 | 7..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:40 Download gff for
BS13620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463343..31463484 | 7..151 | 97 | -> | Plus |
3R | 31463542..31463751 | 152..361 | 100 | -> | Plus |
3R | 31463814..31464085 | 362..635 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:32 Download gff for
BS13620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289065..27289206 | 7..151 | 97 | -> | Plus |
arm_3R | 27289264..27289473 | 152..361 | 100 | -> | Plus |
arm_3R | 27289536..27289807 | 362..635 | 99 | | Plus |
BS13620.complete Sequence
647 bp assembled on 2006-11-01
GenBank Submission: FJ637491
> BS13620.complete
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATTAAAAGCTTTCTAGACCAT
BS13620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 615 | CG11333-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-RA | 715 | CG11333-RA | 49..664 | 16..631 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31463812..31464083 | 360..631 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 31463541..31463751 | 151..361 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 31463349..31463484 | 16..151 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:19:36 has no hits.
BS13620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:44 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:13 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..620 | 13..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:42 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 6..610 | 17..621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:44 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 1..620 | 13..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:22 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11333-RA | 50..654 | 17..621 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:22 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31463350..31463484 | 17..151 | 100 | -> | Plus |
3R | 31463542..31463751 | 152..361 | 100 | -> | Plus |
3R | 31463814..31464073 | 362..621 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:42 Download gff for
BS13620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27289072..27289206 | 17..151 | 100 | -> | Plus |
arm_3R | 27289264..27289473 | 152..361 | 100 | -> | Plus |
arm_3R | 27289536..27289795 | 362..621 | 100 | | Plus |
BS13620.pep Sequence
Translation from 16 to 630
> BS13620.pep
MSKVRGPALYRLVPSKTLFMLCDVQEKFKPAIPLLSSLIENTTKLLAAGK
VFQVPLLVTEQYPERLGKTVCELDIKHACANISKTMFSMLVEPVRKSMTD
IFGGKPKTVVLFGLETHVCVEQTAFDLVNDEIDVWLVADCCASRHNQDRD
LALERLRHIGCNIATSESVIFNLLGDKNNKSFKEITPLVKKISADMQLCR
VSKN*
BS13620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11333-PA | 204 | CG11333-PA | 1..204 | 1..204 | 1049 | 100 | Plus |
CG3663-PA | 208 | CG3663-PA | 8..196 | 12..200 | 583 | 58.7 | Plus |