Clone BS13620 Report

Search the DGRC for BS13620

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG11333-RA
Protein status:BS13620.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13620.3prime Sequence

645 bp (645 high quality bases) assembled on 2006-10-13

> BS13620.3prime
ATGGTCTAGAAAGCTTTTAATTTTTTGAGACGCGGCATAGCTGCATGTCT
GCGGAGATCTTCTTCACCAGAGGAGTAATCTCCTTGAAGGACTTGTTGTT
CTTGTCCCCCAGCAGATTAAATATCACACTCTCGGAAGTTGCTATGTTGC
AGCCAATGTGACGCAGGCGCTCCAAGGCCAAGTCCCGATCCTGATTGTGA
CGCGACGCACAGCAGTCGGCCACCAGCCAGACATCGATTTCATCATTTAC
CAGGTCGAAGGCCGTCTGCTCCACACAGACGTGTGTCTCCAGACCGAAAA
GCACCACCGTCTTGGGCTTGCCACCGAAGATATCAGTCATACTCTTACGT
ACCGGCTCCACCAGCATAGAGAACATGGTCTTGGAAATATTGGCACAGGC
ATGCTTGATGTCCAACTCACAAACGGTCTTGCCCAGCCTCTCGGGATACT
GCTCGGTGACCAGCAGTGGCACTTGGAAGACCTTGCCGGCTGCCAGCAGT
TTAGTAGTGTTTTCGATGAGCGAACTTAGCAGCGGAATGGCCGGCTTGAA
CTTCTCCTGCACGTCGCACAGCATGAAGAGCGTTTTCGAGGGCACCAGGC
GGTACAAAGCTGGTCCTCTGACTTTGCTCATGTCGACTGATAACT

BS13620.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 615 CG11333-RA 1..615 631..17 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..664 632..17 3080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464083 288..17 1360 100 Minus
3R 32079331 3R 31463541..31463751 497..287 1055 100 Minus
3R 32079331 3R 31463349..31463484 632..497 680 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:52 has no hits.

BS13620.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:25 Download gff for BS13620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 17..631 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:46 Download gff for BS13620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..622 13..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:37 Download gff for BS13620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 43..666 13..641 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:37 Download gff for BS13620.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31463343..31463484 497..641 97 -> Minus
3R 31463542..31463751 287..496 100 -> Minus
3R 31463814..31464085 13..286 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:46 Download gff for BS13620.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289065..27289206 497..641 97 -> Minus
arm_3R 27289536..27289807 13..286 99   Minus
arm_3R 27289264..27289473 287..496 100 -> Minus

BS13620.5prime Sequence

645 bp (645 high quality bases) assembled on 2006-10-13

> BS13620.5prime
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATTAAAAGCTTTCTAGACC

BS13620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 615 CG11333-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..664 16..631 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464083 360..631 1360 100 Plus
3R 32079331 3R 31463541..31463751 151..361 1055 100 Plus
3R 32079331 3R 31463349..31463484 16..151 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:38:47 has no hits.

BS13620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:26 Download gff for BS13620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:32 Download gff for BS13620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..622 13..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:40 Download gff for BS13620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 43..666 7..635 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:40 Download gff for BS13620.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31463343..31463484 7..151 97 -> Plus
3R 31463542..31463751 152..361 100 -> Plus
3R 31463814..31464085 362..635 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:32 Download gff for BS13620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289065..27289206 7..151 97 -> Plus
arm_3R 27289264..27289473 152..361 100 -> Plus
arm_3R 27289536..27289807 362..635 99   Plus

BS13620.complete Sequence

647 bp assembled on 2006-11-01

GenBank Submission: FJ637491

> BS13620.complete
GAAGTTATCAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCC
TGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTC
AAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACT
GCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGT
ATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCC
TGTGCCAATATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACG
TAAGAGTATGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTT
TCGGTCTGGAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTA
AATGATGAAATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCA
CAATCAGGATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCA
ACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAAC
AACAAGTCCTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGA
CATGCAGCTATGCCGCGTCTCAAAAAATTAAAAGCTTTCTAGACCAT

BS13620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 615 CG11333-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-RA 715 CG11333-RA 49..664 16..631 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31463812..31464083 360..631 1360 100 Plus
3R 32079331 3R 31463541..31463751 151..361 1055 100 Plus
3R 32079331 3R 31463349..31463484 16..151 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:19:36 has no hits.

BS13620.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:44 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:13 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..620 13..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:42 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 6..610 17..621 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:44 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 1..620 13..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:22 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
CG11333-RA 50..654 17..621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:22 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31463350..31463484 17..151 100 -> Plus
3R 31463542..31463751 152..361 100 -> Plus
3R 31463814..31464073 362..621 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:42 Download gff for BS13620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27289072..27289206 17..151 100 -> Plus
arm_3R 27289264..27289473 152..361 100 -> Plus
arm_3R 27289536..27289795 362..621 100   Plus

BS13620.pep Sequence

Translation from 16 to 630

> BS13620.pep
MSKVRGPALYRLVPSKTLFMLCDVQEKFKPAIPLLSSLIENTTKLLAAGK
VFQVPLLVTEQYPERLGKTVCELDIKHACANISKTMFSMLVEPVRKSMTD
IFGGKPKTVVLFGLETHVCVEQTAFDLVNDEIDVWLVADCCASRHNQDRD
LALERLRHIGCNIATSESVIFNLLGDKNNKSFKEITPLVKKISADMQLCR
VSKN*

BS13620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11333-PA 204 CG11333-PA 1..204 1..204 1049 100 Plus
CG3663-PA 208 CG3663-PA 8..196 12..200 583 58.7 Plus