Clone Sequence Records
BS13625.complete Sequence
452 bp assembled on 2010-02-09
GenBank Submission: KX800342
> BS13625.complete
GAAGTTATCAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTAC
ACCGTGCTCCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACA
CGCACTCTATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCC
TTGTGTGTTCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGA
TTCTGTTCATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATC
CGCCTGGCATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATA
CTATATGTACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTC
GTAAGTGGGGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTG
GCCAACCAGGGCGATGTTTCTGGTCCTTCATTCTAGAAGCTTTCTAGACC
AT
BS13625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-RA | 420 | CG12250-PA | 1..420 | 17..436 | 2055 | 99.3 | Plus |
| ymp-RC | 522 | CG12250-PC | 1..416 | 17..432 | 2035 | 99.3 | Plus |
| ymp-RD | 561 | CG12250-PD | 1..415 | 17..431 | 2030 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-RA | 1270 | CG12250-RA | 97..516 | 17..436 | 2055 | 99.3 | Plus |
| ymp-RC | 1247 | CG12250-RC | 97..512 | 17..432 | 2035 | 99.3 | Plus |
| ymp-RD | 1066 | CG12250-RD | 97..511 | 17..431 | 2030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25592721..25592886 | 355..190 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25592583..25592661 | 431..353 | 365 | 97.5 | Minus |
| 3R | 32079331 | 3R | 25608726..25608798 | 192..120 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 25608969..25609031 | 79..17 | 315 | 100 | Minus |
| 3R | 32079331 | 3R | 25608865..25608906 | 119..78 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:27 has no hits.
BS13625.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:40 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12250-RA | 97..516 | 17..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:16 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..516 | 17..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:00 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12250-RA | 98..517 | 17..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:51 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..516 | 17..436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:51 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25592578..25592658 | 356..436 | 93 | <- | Minus |
| 3R | 25592721..25592885 | 191..355 | 99 | <- | Minus |
| 3R | 25608728..25608798 | 120..190 | 100 | <- | Minus |
| 3R | 25608865..25608904 | 80..119 | 100 | <- | Minus |
| 3R | 25608969..25609031 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:16 Download gff for
BS13625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21418300..21418380 | 356..436 | 93 | <- | Minus |
| arm_3R | 21418443..21418607 | 191..355 | 99 | <- | Minus |
| arm_3R | 21434450..21434520 | 120..190 | 100 | <- | Minus |
| arm_3R | 21434587..21434626 | 80..119 | 100 | <- | Minus |
| arm_3R | 21434691..21434753 | 17..79 | 100 | | Minus |
BS13625.3prime Sequence
450 bp (450 high quality bases) assembled on 2006-10-13
> BS13625.3prime
ATGGTCTAGAAAGCTTCTAGAATGAAGGACCAGAAACATCGCCCTGGTTG
GCCAGGAGCAATCCCGGTGGCATATCATACTCATCCCGACCACCCCACTT
ACGACTCTTTTGCTTGTACCAGGGACCTTTGCGCGTCTCCAAGTACATAT
AGTATGCCGAATCCTTGGTAAAGAACACATCGTCCTTCACCAATGCCAGG
CGGATCATGGCGCCAACCTTAAGTATACCTCCAACAAGTGTTATGAACAG
AATCGGAAGGACCCCCCAATGATGCATGACGGCTTTCTTTGAGAACACAC
AAGGATCATCATCTAAAAACGGTACCAGATTCTTTCTTAACAATAGAGTG
CGTGTTGGCGGTGTTGCTTTTAACTTTGGCACAACTAATAAAGGAGCACG
GTGTAGAAGAGCAATGGTCGTAAGACGAAGCGCCATGTCGACTGATAACT
BS13625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12250-PA | 420 | CG12250-RA | 1..420 | 436..17 | 2025 | 99.2 | Minus |
| CG12250-PB | 441 | CG12250-RB | 1..175 | 436..262 | 875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-RA | 1270 | CG12250-RA | 97..516 | 436..17 | 2055 | 99.3 | Minus |
| ymp-RC | 1247 | CG12250-RC | 97..512 | 436..21 | 2035 | 99.3 | Minus |
| ymp-RD | 1066 | CG12250-RD | 97..511 | 436..22 | 2030 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25592721..25592886 | 98..263 | 815 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25592583..25592661 | 22..100 | 365 | 97.5 | Plus |
| 3R | 32079331 | 3R | 25608726..25608798 | 261..333 | 365 | 100 | Plus |
| 3R | 32079331 | 3R | 25608969..25609031 | 374..436 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 25608865..25608906 | 334..375 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:34:54 has no hits.
BS13625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:28 Download gff for
BS13625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12250-PA | 1..420 | 17..436 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:09 Download gff for
BS13625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..524 | 10..436 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:20:56 Download gff for
BS13625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..524 | 10..436 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:20:56 Download gff for
BS13625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25592580..25592658 | 18..97 | 95 | <- | Plus |
| 3R | 25592721..25592885 | 98..262 | 99 | <- | Plus |
| 3R | 25608728..25608798 | 263..333 | 100 | <- | Plus |
| 3R | 25608865..25608904 | 334..373 | 100 | <- | Plus |
| 3R | 25608969..25609031 | 374..436 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:09 Download gff for
BS13625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21434691..21434753 | 374..436 | 100 | | Plus |
| arm_3R | 21418302..21418380 | 18..97 | 95 | <- | Plus |
| arm_3R | 21418443..21418607 | 98..262 | 99 | <- | Plus |
| arm_3R | 21434450..21434520 | 263..333 | 100 | <- | Plus |
| arm_3R | 21434587..21434626 | 334..373 | 100 | <- | Plus |
BS13625.pep Sequence
Translation from 16 to 435
> BS13625.pep
MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK
KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE
TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSF*
BS13625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-PA | 139 | CG12250-PA | 1..139 | 1..139 | 733 | 100 | Plus |
| ymp-PC | 173 | CG12250-PC | 1..139 | 1..139 | 733 | 100 | Plus |
| ymp-PD | 186 | CG12250-PD | 1..139 | 1..139 | 730 | 99.3 | Plus |
| ymp-PB | 146 | CG12250-PB | 1..140 | 1..139 | 438 | 63.6 | Plus |
