Clone Sequence Records
BS13630.3prime Sequence
608 bp (487 high quality bases) assembled on 2006-10-13
> BS13630.3prime
ATGGTCTAGAAAGCTTCTAGATGTGCAGGGTGGACCCGGGCGGGGAGTTG
GATCCACCAGCTCCTCGCTTGGCTGAGGTCTGTGCCGGCTCCAGATCCTT
CGACCGACCCCAGCTGATGACCAGGCATTCGTAGGTCGGCGGCGGTAGCT
CGAACTTGACCACGCTTTCGTAACTTGGCGGCAGTGAGTCGACAATGCGC
AGCACATCGTTCTGGGAGTTGATATGTGGCATGGCTCCATTGGTGGCCCT
GTTTCCCGCCTCGTCGATGGGTCCCGCCCAAATGCAGACGCCCATGCGGT
GCGTGACATAACCGCAGATGATCACGCTGATCACCAGCATCCCGATGCCC
AGGGCGAAAACCAACCAGCGAGACTCCACGCTATTGTCCCGCAGATTCTT
CTCCAGCTGCAGGGCGCAGAGGATAAGCACCGGCACGGCCACCATGGCCA
CCAACAGGTCGATAATGGGACGTTGGGTGCTGGGTCCGGCGTTCAGGGGA
CTACGTCCGGTTCCGGATCCATTGGGCGTTTCAGCTGGATGTTGGGAGCC
AAAGTTCTGGCTGCTGCTGTTCGGCGTCAAGGTGGAACGGGGCCCCACAG
TGTTGTGG
BS13630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PA | 606 | CG13004-RA | 15..606 | 608..17 | 2860 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RD | 2321 | CG13004-RD | 1012..1603 | 608..17 | 2900 | 99.3 | Minus |
CG13004-RB | 2234 | CG13004-RB | 925..1516 | 608..17 | 2900 | 99.3 | Minus |
CG13004-RC | 936 | CG13004-RC | 63..654 | 608..17 | 2900 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828060 | 224..608 | 1865 | 99 | Plus |
X | 23542271 | X | 16827399..16827605 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:27 has no hits.
BS13630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:29 Download gff for
BS13630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 15..606 | 17..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:31 Download gff for
BS13630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RC | 63..654 | 17..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:57 Download gff for
BS13630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RC | 63..654 | 17..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:57 Download gff for
BS13630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827399..16827605 | 17..223 | 100 | <- | Plus |
X | 16827676..16828060 | 224..608 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:31 Download gff for
BS13630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721432..16721638 | 17..223 | 100 | <- | Plus |
arm_X | 16721709..16722093 | 224..608 | 98 | | Plus |
BS13630.5prime Sequence
601 bp (547 high quality bases) assembled on 2006-10-13
> BS13630.5prime
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
C
BS13630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PA | 606 | CG13004-RA | 1..585 | 17..601 | 2900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RB | 2234 | CG13004-RB | 906..1495 | 12..601 | 2920 | 99.7 | Plus |
CG13004-RD | 2321 | CG13004-RD | 998..1582 | 17..601 | 2910 | 99.8 | Plus |
CG13004-RC | 936 | CG13004-RC | 49..633 | 17..601 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828074 | 415..17 | 1980 | 99.7 | Minus |
X | 23542271 | X | 16827420..16827605 | 601..416 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:52 has no hits.
BS13630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:30 Download gff for
BS13630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:01 Download gff for
BS13630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1489 | 7..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:04 Download gff for
BS13630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 902..1495 | 7..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:04 Download gff for
BS13630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827420..16827605 | 416..601 | 100 | <- | Minus |
X | 16827676..16828078 | 9..415 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:01 Download gff for
BS13630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721453..16721638 | 416..601 | 100 | <- | Minus |
arm_X | 16721709..16722111 | 9..415 | 98 | | Minus |
BS13630.complete Sequence
638 bp assembled on 2006-11-01
GenBank Submission: FJ637492
> BS13630.complete
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
CGGGTCCACCCTGCACATCTAGAAGCTTTCTAGACCAT
BS13630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RD | 654 | CG13004-PD | 49..654 | 17..622 | 3015 | 99.8 | Plus |
CG13004-RB | 606 | CG13004-PB | 1..606 | 17..622 | 3015 | 99.8 | Plus |
CG13004-RC | 606 | CG13004-PC | 1..606 | 17..622 | 3015 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RB | 2234 | CG13004-RB | 906..1516 | 12..622 | 3025 | 99.7 | Plus |
CG13004-RD | 2321 | CG13004-RD | 998..1603 | 17..622 | 3015 | 99.8 | Plus |
CG13004-RC | 936 | CG13004-RC | 49..654 | 17..622 | 3015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828074 | 415..17 | 1980 | 99.7 | Minus |
X | 23542271 | X | 16827399..16827605 | 622..416 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:05:25 has no hits.
BS13630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:48 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:36 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1510 | 7..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:25 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 905..1510 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:48 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1510 | 7..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:44 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 911..1516 | 17..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:44 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827399..16827605 | 416..622 | 100 | <- | Minus |
X | 16827676..16828074 | 17..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:25 Download gff for
BS13630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721432..16721638 | 416..622 | 100 | <- | Minus |
arm_X | 16721709..16722107 | 17..415 | 99 | | Minus |
BS13630.pep Sequence
Translation from 16 to 621
> BS13630.pep
MVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQ
RPIIDLLVAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISV
IICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPS
YESVVKFELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLH
I*
BS13630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PB | 201 | CG13004-PB | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PC | 201 | CG13004-PC | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PA | 201 | CG13004-PA | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PD | 217 | CG13004-PD | 17..217 | 1..201 | 1049 | 100 | Plus |