Clone BS13630 Report

Search the DGRC for BS13630

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG13004-RA
Protein status:BS13630.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13630.3prime Sequence

608 bp (487 high quality bases) assembled on 2006-10-13

> BS13630.3prime
ATGGTCTAGAAAGCTTCTAGATGTGCAGGGTGGACCCGGGCGGGGAGTTG
GATCCACCAGCTCCTCGCTTGGCTGAGGTCTGTGCCGGCTCCAGATCCTT
CGACCGACCCCAGCTGATGACCAGGCATTCGTAGGTCGGCGGCGGTAGCT
CGAACTTGACCACGCTTTCGTAACTTGGCGGCAGTGAGTCGACAATGCGC
AGCACATCGTTCTGGGAGTTGATATGTGGCATGGCTCCATTGGTGGCCCT
GTTTCCCGCCTCGTCGATGGGTCCCGCCCAAATGCAGACGCCCATGCGGT
GCGTGACATAACCGCAGATGATCACGCTGATCACCAGCATCCCGATGCCC
AGGGCGAAAACCAACCAGCGAGACTCCACGCTATTGTCCCGCAGATTCTT
CTCCAGCTGCAGGGCGCAGAGGATAAGCACCGGCACGGCCACCATGGCCA
CCAACAGGTCGATAATGGGACGTTGGGTGCTGGGTCCGGCGTTCAGGGGA
CTACGTCCGGTTCCGGATCCATTGGGCGTTTCAGCTGGATGTTGGGAGCC
AAAGTTCTGGCTGCTGCTGTTCGGCGTCAAGGTGGAACGGGGCCCCACAG
TGTTGTGG

BS13630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PA 606 CG13004-RA 15..606 608..17 2860 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-RD 2321 CG13004-RD 1012..1603 608..17 2900 99.3 Minus
CG13004-RB 2234 CG13004-RB 925..1516 608..17 2900 99.3 Minus
CG13004-RC 936 CG13004-RC 63..654 608..17 2900 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16827676..16828060 224..608 1865 99 Plus
X 23542271 X 16827399..16827605 17..223 1035 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:21:27 has no hits.

BS13630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:29 Download gff for BS13630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-PA 15..606 17..608 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:31 Download gff for BS13630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-RC 63..654 17..608 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:57 Download gff for BS13630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-RC 63..654 17..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:57 Download gff for BS13630.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16827399..16827605 17..223 100 <- Plus
X 16827676..16828060 224..608 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:31 Download gff for BS13630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16721432..16721638 17..223 100 <- Plus
arm_X 16721709..16722093 224..608 98   Plus

BS13630.5prime Sequence

601 bp (547 high quality bases) assembled on 2006-10-13

> BS13630.5prime
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
C

BS13630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PA 606 CG13004-RA 1..585 17..601 2900 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-RB 2234 CG13004-RB 906..1495 12..601 2920 99.7 Plus
CG13004-RD 2321 CG13004-RD 998..1582 17..601 2910 99.8 Plus
CG13004-RC 936 CG13004-RC 49..633 17..601 2910 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16827676..16828074 415..17 1980 99.7 Minus
X 23542271 X 16827420..16827605 601..416 930 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:52 has no hits.

BS13630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:30 Download gff for BS13630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-PA 1..585 17..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:01 Download gff for BS13630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 896..1489 7..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:04 Download gff for BS13630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 902..1495 7..601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:04 Download gff for BS13630.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16827420..16827605 416..601 100 <- Minus
X 16827676..16828078 9..415 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:01 Download gff for BS13630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16721453..16721638 416..601 100 <- Minus
arm_X 16721709..16722111 9..415 98   Minus

BS13630.complete Sequence

638 bp assembled on 2006-11-01

GenBank Submission: FJ637492

> BS13630.complete
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
CGGGTCCACCCTGCACATCTAGAAGCTTTCTAGACCAT

BS13630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-RD 654 CG13004-PD 49..654 17..622 3015 99.8 Plus
CG13004-RB 606 CG13004-PB 1..606 17..622 3015 99.8 Plus
CG13004-RC 606 CG13004-PC 1..606 17..622 3015 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-RB 2234 CG13004-RB 906..1516 12..622 3025 99.7 Plus
CG13004-RD 2321 CG13004-RD 998..1603 17..622 3015 99.8 Plus
CG13004-RC 936 CG13004-RC 49..654 17..622 3015 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16827676..16828074 415..17 1980 99.7 Minus
X 23542271 X 16827399..16827605 622..416 1035 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:05:25 has no hits.

BS13630.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:48 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 17..622 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:36 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 896..1510 7..622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:25 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 905..1510 17..622 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:48 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 896..1510 7..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:44 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 911..1516 17..622 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:44 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
X 16827399..16827605 416..622 100 <- Minus
X 16827676..16828074 17..415 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:25 Download gff for BS13630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16721432..16721638 416..622 100 <- Minus
arm_X 16721709..16722107 17..415 99   Minus

BS13630.pep Sequence

Translation from 16 to 621

> BS13630.pep
MVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQ
RPIIDLLVAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISV
IICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPS
YESVVKFELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLH
I*

BS13630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PB 201 CG13004-PB 1..201 1..201 1049 100 Plus
CG13004-PC 201 CG13004-PC 1..201 1..201 1049 100 Plus
CG13004-PA 201 CG13004-PA 1..201 1..201 1049 100 Plus
CG13004-PD 217 CG13004-PD 17..217 1..201 1049 100 Plus