Clone BS13631 Report

Search the DGRC for BS13631

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG12289-RB
Protein status:BS13631.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13631.3prime Sequence

608 bp (605 high quality bases) assembled on 2006-10-13

> BS13631.3prime
ATGGTCTAGAAAGCTTCTAGCTAGAAAGTTGCGAAGTCTCGATCGGAACT
TCCTTCTCAGTGGGTGCAATGGAGGACTTTTCCGGCAGGAACTCAATCGG
GCGTAACAGGTGCTTCTTGCAGCTATTCAACTGATCGCCGTTATCCTCAT
CGTCGGAGGACACCTCACTGCCACACCTCATTCTAACGGGCAGCTTAACC
GCATCGATTGGCAAATGACCCAGGCAATCGAAACCCACATAGCCCAACTT
ATAGCTGGCCACAGCATTGGCGAAGTCCACGGCTTCGGCCAATCGCCTTT
GCCGCACAAAAGCGGCATAAATGAAGCCCGCCGTGAAGCAATCACTATCG
CCCACCCGATCGATGATCTTTTTCGGCTTGTGTGCTGGCACTTCGAAGTA
CTCCCCTTCCGTGGTCATACATCCTGCTCCCAGGCTGCTCCACGGCACAA
TGATGCAGGGTCTGCGAATTCTAATGTTCCTTGGCATGCGCAGTAGCGCA
TTGACACCCTCGCAGGCTTCCAGCGGTGACTTCCAGCCTCTGGACTCGGC
TATATACTTGGTGACGAACACATAGTCGCACATGGCAATCAGATGCACGA
CCTGTTCG

BS13631.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 1137 CG12289-RA 546..1137 608..17 2960 100 Minus
CG12289-PB 1011 CG12289-RB 420..1011 608..17 2960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1395 CG12289-RA 724..1317 608..15 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11457154..11457747 15..608 2970 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:39:10 has no hits.

BS13631.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:30 Download gff for BS13631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-PB 420..1011 17..608 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:34 Download gff for BS13631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 724..1317 15..608 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:44 Download gff for BS13631.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 724..1317 15..608 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:44 Download gff for BS13631.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11457154..11457747 15..608 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:34 Download gff for BS13631.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11450254..11450847 15..608 100   Plus

BS13631.5prime Sequence

648 bp (563 high quality bases) assembled on 2006-10-13

> BS13631.5prime
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTT

BS13631.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 1137 CG12289-RA 127..758 17..648 3110 99.6 Plus
CG12289-PB 1011 CG12289-RB 1..632 17..648 3110 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1395 CG12289-RA 305..936 17..648 3130 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11457535..11458166 648..17 3130 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:39:32 has no hits.

BS13631.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:31 Download gff for BS13631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-PB 1..632 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:38 Download gff for BS13631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 303..936 14..648 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:46 Download gff for BS13631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 303..936 14..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:46 Download gff for BS13631.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11457535..11458168 14..648 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:38 Download gff for BS13631.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11450635..11451268 14..648 99   Minus

BS13631.complete Sequence

1043 bp assembled on 2006-11-01

GenBank Submission: FJ637493

> BS13631.complete
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTTCG
AAGTGCCAGCACACAAGCCGAAAAAGATCATCGATCGGGTGGGCGATAGT
GATTGCTTCACGGCGGGCTTCATTTATGCCGCTTTTGTGCGGCAAAGGCG
ATTGGCCGAAGCCGTGGACTTCGCCAATGCTGTGGCCAGCTATAAGTTGG
GCTATGTGGGTTTCGATTGCCTGGGTCATTTGCCAATCGATGCGGTTAAG
CTGCCCGTTAGAATGAGGTGTGGCAGTGAGGTGTCCTCCGACGATGAGGA
TAACGGCGATCAGTTGAATAGCTGCAAGAAGCACCTGTTACGCCCGATTG
AGTTCCTGCCGGAAAAGTCCTCCATTGCACCCACTGAGAAGGAAGTTCCG
ATCGAGACTTCGCAACTTTCTAGCTAGAAGCTTTCTAGACCAT

BS13631.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1137 CG12289-PA 127..1137 17..1027 5025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1395 CG12289-RA 305..1317 17..1029 5035 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11457154..11458166 1029..17 5035 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:06 has no hits.

BS13631.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:45 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RB 1..1011 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:15 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RB 135..1149 14..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:39 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 305..1315 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:45 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RB 135..1149 14..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:39 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 305..1315 17..1027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:39 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11457156..11458166 17..1027 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:39 Download gff for BS13631.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11450256..11451266 17..1027 99   Minus

BS13631.pep Sequence

Translation from 16 to 1026

> BS13631.pep
MLQRSGRSSNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISH
CTFTDASPPFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWV
NFEARSPRETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMC
DYVFVTKYIAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLG
AGCMTTEGEYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAV
DFANAVASYKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQL
NSCKKHLLRPIEFLPEKSSIAPTEKEVPIETSQLSS*

BS13631.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 378 CG12289-PA 43..378 1..336 1771 100 Plus
CG7328-PA 306 CG7328-PA 39..304 3..274 577 42.7 Plus
CG7551-PB 322 CG7551-PB 50..316 4..272 526 37.5 Plus
CG7335-PA 372 CG7335-PA 65..367 3..277 292 26.6 Plus