Clone Sequence Records
BS13631.3prime Sequence
608 bp (605 high quality bases) assembled on 2006-10-13
> BS13631.3prime
ATGGTCTAGAAAGCTTCTAGCTAGAAAGTTGCGAAGTCTCGATCGGAACT
TCCTTCTCAGTGGGTGCAATGGAGGACTTTTCCGGCAGGAACTCAATCGG
GCGTAACAGGTGCTTCTTGCAGCTATTCAACTGATCGCCGTTATCCTCAT
CGTCGGAGGACACCTCACTGCCACACCTCATTCTAACGGGCAGCTTAACC
GCATCGATTGGCAAATGACCCAGGCAATCGAAACCCACATAGCCCAACTT
ATAGCTGGCCACAGCATTGGCGAAGTCCACGGCTTCGGCCAATCGCCTTT
GCCGCACAAAAGCGGCATAAATGAAGCCCGCCGTGAAGCAATCACTATCG
CCCACCCGATCGATGATCTTTTTCGGCTTGTGTGCTGGCACTTCGAAGTA
CTCCCCTTCCGTGGTCATACATCCTGCTCCCAGGCTGCTCCACGGCACAA
TGATGCAGGGTCTGCGAATTCTAATGTTCCTTGGCATGCGCAGTAGCGCA
TTGACACCCTCGCAGGCTTCCAGCGGTGACTTCCAGCCTCTGGACTCGGC
TATATACTTGGTGACGAACACATAGTCGCACATGGCAATCAGATGCACGA
CCTGTTCG
BS13631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 1137 | CG12289-RA | 546..1137 | 608..17 | 2960 | 100 | Minus |
CG12289-PB | 1011 | CG12289-RB | 420..1011 | 608..17 | 2960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 724..1317 | 608..15 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457154..11457747 | 15..608 | 2970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:39:10 has no hits.
BS13631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:30 Download gff for
BS13631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 420..1011 | 17..608 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:34 Download gff for
BS13631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 724..1317 | 15..608 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:44 Download gff for
BS13631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 724..1317 | 15..608 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:44 Download gff for
BS13631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457154..11457747 | 15..608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:34 Download gff for
BS13631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450254..11450847 | 15..608 | 100 | | Plus |
BS13631.5prime Sequence
648 bp (563 high quality bases) assembled on 2006-10-13
> BS13631.5prime
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTT
BS13631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 1137 | CG12289-RA | 127..758 | 17..648 | 3110 | 99.6 | Plus |
CG12289-PB | 1011 | CG12289-RB | 1..632 | 17..648 | 3110 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 305..936 | 17..648 | 3130 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457535..11458166 | 648..17 | 3130 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:39:32 has no hits.
BS13631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:31 Download gff for
BS13631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 1..632 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:38 Download gff for
BS13631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 303..936 | 14..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:46 Download gff for
BS13631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 303..936 | 14..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:46 Download gff for
BS13631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457535..11458168 | 14..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:38 Download gff for
BS13631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450635..11451268 | 14..648 | 99 | | Minus |
BS13631.complete Sequence
1043 bp assembled on 2006-11-01
GenBank Submission: FJ637493
> BS13631.complete
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTTCG
AAGTGCCAGCACACAAGCCGAAAAAGATCATCGATCGGGTGGGCGATAGT
GATTGCTTCACGGCGGGCTTCATTTATGCCGCTTTTGTGCGGCAAAGGCG
ATTGGCCGAAGCCGTGGACTTCGCCAATGCTGTGGCCAGCTATAAGTTGG
GCTATGTGGGTTTCGATTGCCTGGGTCATTTGCCAATCGATGCGGTTAAG
CTGCCCGTTAGAATGAGGTGTGGCAGTGAGGTGTCCTCCGACGATGAGGA
TAACGGCGATCAGTTGAATAGCTGCAAGAAGCACCTGTTACGCCCGATTG
AGTTCCTGCCGGAAAAGTCCTCCATTGCACCCACTGAGAAGGAAGTTCCG
ATCGAGACTTCGCAACTTTCTAGCTAGAAGCTTTCTAGACCAT
BS13631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1137 | CG12289-PA | 127..1137 | 17..1027 | 5025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 305..1317 | 17..1029 | 5035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457154..11458166 | 1029..17 | 5035 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:06 has no hits.
BS13631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:45 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 1..1011 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:15 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 135..1149 | 14..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:39 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 305..1315 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:45 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 135..1149 | 14..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:39 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 305..1315 | 17..1027 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:39 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457156..11458166 | 17..1027 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:39 Download gff for
BS13631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450256..11451266 | 17..1027 | 99 | | Minus |
BS13631.pep Sequence
Translation from 16 to 1026
> BS13631.pep
MLQRSGRSSNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISH
CTFTDASPPFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWV
NFEARSPRETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMC
DYVFVTKYIAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLG
AGCMTTEGEYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAV
DFANAVASYKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQL
NSCKKHLLRPIEFLPEKSSIAPTEKEVPIETSQLSS*
BS13631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 378 | CG12289-PA | 43..378 | 1..336 | 1771 | 100 | Plus |
CG7328-PA | 306 | CG7328-PA | 39..304 | 3..274 | 577 | 42.7 | Plus |
CG7551-PB | 322 | CG7551-PB | 50..316 | 4..272 | 526 | 37.5 | Plus |
CG7335-PA | 372 | CG7335-PA | 65..367 | 3..277 | 292 | 26.6 | Plus |