Clone Sequence Records
BS13632.complete Sequence
1826 bp assembled on 2009-12-07
GenBank Submission: KX804549
> BS13632.complete
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCACCACCACCATCACCACCTCACGGCAGC
GGGTTGTACGGGCGGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGAT
CCTGCAAGGCGAAGAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGC
CAGCTATTGCCCATCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGC
CACATTAATAGTTTACATGGACACGACAGAGATTCGCCATCAGCAGTTTC
GGCTAAACATGTCGCGCGACTACGAGCTGAATGGGGTTGCGCAAGACGAT
CCCGCACTCATTGATTTCCTGCGCCAGATCCACATGGGCAAGTACCTGGG
CAAGGCGTCGCCCAAGGTCGCGGCAGCGGCCTCAGTGGGCGTGGGTCCGC
CGCCCAACTCGCCGCGCCTCGCCGCCGCAGGCTCAACATTCGGTAGTGGC
AACAGCAGCGGCAGTGGAGCCGATCAACTGGCCCACTACGTGGCCGACCT
AGTGGGCGGCAAGATGAACGGCGCGGTGATCCAGTCGCTGAGCGGTCCTC
TCGCCCATCTGATCACGGCGCCCTGGCTGAGCGAGCAGCTCAACTGGATG
GGCGTGCTGGTGGAGCCGGAGCCGCGCTGGTACTTCACGTTGCGCAAGCA
GAATGCCCAGCGGGCGCGCATGCAGGTGGTGCACGCCTGTGTTTCGCCCA
ATACCTATCCCAAAGAGATTACCATACACAACGAGGATGTGCGCATCAAT
AGTCTGCACGACGAGGAGACCTCGTGGTTCAACTCGCGTGTCAAATGCTT
TCCGCTCTACACAATCATGCTGGCATGTGAGCGCACCGAATACGATCTGC
TCAGCCTGGGCGTACAGGGGCATGAGCTGGAGATCTTGCAGACGCTGCCC
TTCGACAAAGTCAAAATCGATGTGATATCGATACATTTGCTCGAGGATCA
CGAGGACGTGGCCGATTACGTGCTGGACATCACCAGGTTCCTGGCGGGCA
AGTCCTATAAGCTGCAGCGCAAGATCGGTCGGAACTACTTCTACCAGCGG
CTCAATGCCAGCGCCAGTCGCACGCGCAAAAAAGATATCCTGCTGCTGAA
GACGCCCTAGAAGCTTTCTAGACCAT
BS13632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 1794 | CG4385-PA | 1..1794 | 17..1810 | 8955 | 99.9 | Plus |
S-RB | 1794 | CG4385-PB | 1..1794 | 17..1810 | 8955 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 227..2021 | 16..1810 | 8960 | 99.9 | Plus |
S-RB | 5206 | CG4385-RB | 1048..2842 | 16..1810 | 8960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1061234..1062147 | 929..16 | 4570 | 100 | Minus |
2L | 23513712 | 2L | 1052566..1053056 | 1417..927 | 2440 | 99.8 | Minus |
2L | 23513712 | 2L | 1052038..1052267 | 1810..1581 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 1052331..1052497 | 1582..1416 | 835 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2510 | 592..752 | 151 | 58.8 | Plus |
BS13632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:50 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 1..1794 | 17..1810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:16 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 228..2021 | 17..1810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:00 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1049..2842 | 17..1810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:14 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RA | 228..2021 | 17..1810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:52 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1049..2842 | 17..1810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:52 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1052038..1052265 | 1583..1810 | 100 | <- | Minus |
2L | 1052331..1052495 | 1418..1582 | 100 | <- | Minus |
2L | 1052566..1053053 | 930..1417 | 99 | <- | Minus |
2L | 1061234..1062146 | 17..929 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:00 Download gff for
BS13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1052038..1052265 | 1583..1810 | 100 | <- | Minus |
arm_2L | 1052331..1052495 | 1418..1582 | 100 | <- | Minus |
arm_2L | 1052566..1053053 | 930..1417 | 99 | <- | Minus |
arm_2L | 1061234..1062146 | 17..929 | 100 | | Minus |
BS13632.3prime Sequence
758 bp (686 high quality bases) assembled on 2006-10-13
> BS13632.3prime
ATGGTCTAGAAAGCTTCTAGGGCGTCTTCAGCAGCAGGATATCTTTTTTG
CGCGTGCGACTGGCGCTGGCATTGAGCCGCTGGTAGAAGTAGTTCCGACC
GATCTTGCGCTGCAGCTTATAGGACTTGCCCGCCAGGAACCTGGTGATGT
CCAGCACGTAATCGGCCACGTCCTCGTGATCCTCGAGCAAATGTATCGAT
ATCACATCGATTTTGACTTTGTCGAAGGGCAGCGTCTGCAAGATCTCCAG
CTCATGCCCCTGTACGCCCAGGCTGAGCAGATCGTATTCGGTGCGCTCAC
ATGCCAGCATGATTGTGTAGAGCGGAAAGCATTTGACACGCGAGTTGAAC
CACGAGGTCTCCTCGTCGTGCAGACTATTGATGCGCACATCCTCGTTGTG
TATGGTAATCTCTTTGGGATAGGTATTGGGCGAAACACAGGCGTGCACCA
CCTGCATGCGCGCCCGCTGGGCATTCTGCTTGCGCAACGTGAAGTACCAG
CGCGGCTCCGGCTCCACCAGCACGCCCATCCAGTTGAGCTGCTCGCTCAG
CCAGGGCGCCGTGATCAGATGGGCGAGAGGACCGCTCAGCGACTGGATCA
CCGCGCCGTTCATCTTGCCGCCCACTAGGTCGGCCACGTAGTGGGCCAGT
TGATCGGCTCCACTGCCGCTGCTGTTGCCACTACCGAATGTTGAGCCTGC
GGCGGCGAGGCGCGGCGAGTTGGGCGGCGGACCCACGCCCACTGAGGCCG
CTGCCGCG
BS13632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4385-PB | 1794 | S-RB | 1053..1794 | 758..17 | 3685 | 99.8 | Minus |
CG4385-PA | 1794 | S-RA | 1053..1794 | 758..17 | 3685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 1280..2021 | 758..17 | 3695 | 99.9 | Minus |
S-RB | 5206 | CG4385-RB | 2101..2842 | 758..17 | 3695 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1052566..1052914 | 410..758 | 1730 | 99.7 | Plus |
2L | 23513712 | 2L | 1052038..1052267 | 17..246 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 1052331..1052497 | 245..411 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:16:18 has no hits.
BS13632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:31 Download gff for
BS13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4385-PA | 1053..1794 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:41:57 Download gff for
BS13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 2101..2845 | 12..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:58 Download gff for
BS13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 2101..2845 | 12..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:58 Download gff for
BS13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1052331..1052495 | 245..409 | 100 | <- | Plus |
2L | 1052566..1052914 | 410..758 | 99 | | Plus |
2L | 1052035..1052265 | 12..244 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:41:57 Download gff for
BS13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1052035..1052265 | 12..244 | 99 | <- | Plus |
arm_2L | 1052331..1052495 | 245..409 | 100 | <- | Plus |
arm_2L | 1052566..1052914 | 410..758 | 99 | | Plus |
BS13632.5prime Sequence
723 bp (626 high quality bases) assembled on 2006-10-13
> BS13632.5prime
GAAGTTATCAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGC
TGGCGGTGGACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGT
AGTAATCATCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAA
GGCCGCACCCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGAT
CGGGAACCCTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAAC
CCCGCCATCAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTA
TGCGGCGGTGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGG
TGAACTTTGGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCA
ACCAAAGACTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAA
AAACACAATGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGG
ACGGAGGAGGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCG
TCGGTCAGCACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACA
GGCGCTGCAACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGT
CCCGGGCGAGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCAC
CACCAGCAGCAGCACCATCACCA
BS13632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4385-PB | 1794 | S-RB | 1..707 | 17..723 | 3535 | 100 | Plus |
CG4385-PA | 1794 | S-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-RA | 2267 | CG4385-RA | 227..934 | 16..723 | 3540 | 100 | Plus |
S-RB | 5206 | CG4385-RB | 1048..1755 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1061440..1062147 | 723..16 | 3540 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6795 | 656..723 | 153 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6816 | 656..723 | 153 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2374 | 624..723 | 142 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6923 | 592..722 | 141 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2428 | 656..723 | 137 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6870 | 592..723 | 135 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1576 | 668..723 | 134 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2653 | 353..723 | 133 | 54.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6774 | 671..723 | 130 | 71.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1103..1154 | 671..722 | 125 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2478 | 592..722 | 123 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7358..7419 | 662..723 | 121 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6828 | 671..723 | 120 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2288..2365 | 652..723 | 115 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2514 | 657..722 | 114 | 68.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1056..1101 | 678..723 | 113 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 668..720 | 112 | 67.9 | Plus |
BS13632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:31 Download gff for
BS13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4385-PA | 1..706 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:39:29 Download gff for
BS13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1040..1754 | 7..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:40 Download gff for
BS13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-RB | 1040..1754 | 7..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:40 Download gff for
BS13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1061441..1062155 | 7..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:39:29 Download gff for
BS13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1061441..1062155 | 7..722 | 99 | | Minus |
BS13632.pep Sequence
Translation from 16 to 1809
> BS13632.pep
MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK
FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD
DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT
SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ
LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG
GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY
MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK
VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM
NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA
RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI
MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD
YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTP*
BS13632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-PA | 597 | CG4385-PA | 1..597 | 1..597 | 3157 | 100 | Plus |
S-PB | 597 | CG4385-PB | 1..597 | 1..597 | 3157 | 100 | Plus |