Clone Sequence Records
BS13633.complete Sequence
1400 bp assembled on 2009-12-07
GenBank Submission: KX806186
> BS13633.complete
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCAATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTT
TGGTGGCGGATCGACCGTGAGTTTTCAGGAGCTGCAGACGAACCTGGTGC
CATATCCCCGAATCCACTATCCGCTGATCAACTACGCACCACTGGTACCC
ATTTCGCACTCGCAGTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCA
GTGTTTCCAGATGAGCAACCAAATGGTCAGATGCAATCCCTCGCATGGCA
AGTACATGGCCAGTGTGCTGCTCTACCGCGGTGATATCGCACCCAATGAG
ATCAATACGGCGCTGGAGAACATCAAGCGGAACAGGTCTTTCCGTTTTGT
CGACTGGTCGCCCACGGGCTTTAAGATCGGCGTTAGCCCCATGCCGCCGT
ACTATGTTCCTGGCGGCGATCTGGCGCCCACCAATCGCGCCTGCGTGGCC
ATCTCGAACAACACGAACATCCGGATCGCCTGGTGCCGCCTGGTCAACAA
GTTCGACAAGCTCTATCAGCGGCGAGCCTTCGTCTATCACTATGTGGGCG
AAGGACTCGAGGAGGGCAACTTCAACGAGGCCTCCGAGAACATTTGCCAG
CTGGTGCACGACTATCTGGAGGTGGATGCATCGGCTCCCACCTCGCGACG
CGATTCCGATCCGGAGGAGGACTCTCTCAACTAAAAGCTTTCTAGACCAT
BS13633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7794-RA | 1368 | CG7794-PA | 1..1368 | 17..1384 | 6780 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7794-RA | 1549 | CG7794-RA | 101..1471 | 15..1385 | 6795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18024462..18025300 | 547..1385 | 4165 | 99.8 | Plus |
3R | 32079331 | 3R | 18024091..18024396 | 241..546 | 1500 | 99.3 | Plus |
3R | 32079331 | 3R | 18023807..18024034 | 15..242 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:49:04 has no hits.
BS13633.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:43 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 103..1468 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:39 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 103..1468 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:07 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 103..1468 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:33 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 103..1468 | 17..1382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:33 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18023809..18024034 | 17..242 | 100 | -> | Plus |
3R | 18024093..18024396 | 243..546 | 99 | -> | Plus |
3R | 18024462..18025297 | 547..1382 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:39 Download gff for
BS13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13849531..13849756 | 17..242 | 100 | -> | Plus |
arm_3R | 13849815..13850118 | 243..546 | 99 | -> | Plus |
arm_3R | 13850184..13851019 | 547..1382 | 99 | | Plus |
BS13633.5prime Sequence
715 bp (620 high quality bases) assembled on 2006-10-13
> BS13633.5prime
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCCATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCA
BS13633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7794-PA | 1368 | CG7794-RA | 1..699 | 17..715 | 3395 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7794-RA | 1549 | CG7794-RA | 101..801 | 15..715 | 3445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18024091..18024396 | 241..546 | 1500 | 99.3 | Plus |
3R | 32079331 | 3R | 18023807..18024034 | 15..242 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 18024462..18024630 | 547..715 | 815 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:57:31 has no hits.
BS13633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:32 Download gff for
BS13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-PA | 1..698 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:39:35 Download gff for
BS13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 95..800 | 6..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:20 Download gff for
BS13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7794-RA | 95..800 | 6..714 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:20 Download gff for
BS13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18023801..18024034 | 6..242 | 98 | -> | Plus |
3R | 18024093..18024396 | 243..546 | 99 | -> | Plus |
3R | 18024462..18024629 | 547..714 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:39:35 Download gff for
BS13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13849523..13849756 | 6..242 | 98 | -> | Plus |
arm_3R | 13849815..13850118 | 243..546 | 99 | -> | Plus |
arm_3R | 13850184..13850351 | 547..714 | 98 | | Plus |
BS13633.pep Sequence
Translation from 16 to 1383
> BS13633.pep
MSGKGEIIQIHIGQAGVQIANACWELFCLEHGILANGRLTQSPMDDSFLT
FFEFTSHQPCVQPRLVMIDTEPTVIDEIRTGSYRNLFHPDTLITGKDDSG
SNFARGYNLMASELLDRSMNAIRRVADRCRNLRGFLVFRAIGGGSGSGLG
TRIMERLVEDFGKKMTVVEFLVYPSPSISPVIVEPYNALLAAHFSMDCAD
VSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQRFGGGST
VSFQELQTNLVPYPRIHYPLINYAPLVPISHSQFVNMSTAQLTGQCFQMS
NQMVRCNPSHGKYMASVLLYRGDIAPNEINTALENIKRNRSFRFVDWSPT
GFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLY
QRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEVDASAPTSRRDSDPE
EDSLN*
BS13633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7794-PA | 455 | CG7794-PA | 1..455 | 1..455 | 2397 | 100 | Plus |
alphaTub84B-PA | 450 | CG1913-PA | 3..435 | 6..436 | 1279 | 53.6 | Plus |
alphaTub84D-PA | 450 | CG2512-PA | 3..435 | 6..436 | 1270 | 53.6 | Plus |
alphaTub85E-PA | 449 | CG9476-PA | 3..441 | 6..442 | 1264 | 52.8 | Plus |
alphaTub67C-PA | 462 | CG8308-PA | 3..461 | 6..451 | 1158 | 48.8 | Plus |