Clone BS13633 Report

Search the DGRC for BS13633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7794-RA
Protein status:BS13633.pep: full length peptide match
Sequenced Size:1400

Clone Sequence Records

BS13633.complete Sequence

1400 bp assembled on 2009-12-07

GenBank Submission: KX806186

> BS13633.complete
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCAATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTT
TGGTGGCGGATCGACCGTGAGTTTTCAGGAGCTGCAGACGAACCTGGTGC
CATATCCCCGAATCCACTATCCGCTGATCAACTACGCACCACTGGTACCC
ATTTCGCACTCGCAGTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCA
GTGTTTCCAGATGAGCAACCAAATGGTCAGATGCAATCCCTCGCATGGCA
AGTACATGGCCAGTGTGCTGCTCTACCGCGGTGATATCGCACCCAATGAG
ATCAATACGGCGCTGGAGAACATCAAGCGGAACAGGTCTTTCCGTTTTGT
CGACTGGTCGCCCACGGGCTTTAAGATCGGCGTTAGCCCCATGCCGCCGT
ACTATGTTCCTGGCGGCGATCTGGCGCCCACCAATCGCGCCTGCGTGGCC
ATCTCGAACAACACGAACATCCGGATCGCCTGGTGCCGCCTGGTCAACAA
GTTCGACAAGCTCTATCAGCGGCGAGCCTTCGTCTATCACTATGTGGGCG
AAGGACTCGAGGAGGGCAACTTCAACGAGGCCTCCGAGAACATTTGCCAG
CTGGTGCACGACTATCTGGAGGTGGATGCATCGGCTCCCACCTCGCGACG
CGATTCCGATCCGGAGGAGGACTCTCTCAACTAAAAGCTTTCTAGACCAT

BS13633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-RA 1368 CG7794-PA 1..1368 17..1384 6780 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-RA 1549 CG7794-RA 101..1471 15..1385 6795 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18024462..18025300 547..1385 4165 99.8 Plus
3R 32079331 3R 18024091..18024396 241..546 1500 99.3 Plus
3R 32079331 3R 18023807..18024034 15..242 1140 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:49:04 has no hits.

BS13633.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:43 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 103..1468 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:39 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 103..1468 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:07 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 103..1468 17..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:33 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 103..1468 17..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:33 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18023809..18024034 17..242 100 -> Plus
3R 18024093..18024396 243..546 99 -> Plus
3R 18024462..18025297 547..1382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:39 Download gff for BS13633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13849531..13849756 17..242 100 -> Plus
arm_3R 13849815..13850118 243..546 99 -> Plus
arm_3R 13850184..13851019 547..1382 99   Plus

BS13633.5prime Sequence

715 bp (620 high quality bases) assembled on 2006-10-13

> BS13633.5prime
GAAGTTATCAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACA
TTGGCCAGGCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGT
CTGGAGCACGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGA
CGACTCGTTCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGC
AACCTCGACTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATC
CGTACCGGCTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGG
CAAGGATGACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCA
GCGAGCTGTTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGT
TGCAGAAATCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTC
TGGTTCCGGGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTG
GCAAGAAGATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATC
TCTCCGGTTATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTC
CATGGACTGCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACG
ACATATGTGCTAATACACTCCATGTCCCTGCTCCCACATATACGAATCTC
AATAGGATCATCGCA

BS13633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-PA 1368 CG7794-RA 1..699 17..715 3395 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-RA 1549 CG7794-RA 101..801 15..715 3445 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18024091..18024396 241..546 1500 99.3 Plus
3R 32079331 3R 18023807..18024034 15..242 1140 100 Plus
3R 32079331 3R 18024462..18024630 547..715 815 98.8 Plus
Blast to na_te.dros performed on 2015-02-13 06:57:31 has no hits.

BS13633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:32 Download gff for BS13633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7794-PA 1..698 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:39:35 Download gff for BS13633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 95..800 6..714 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:20 Download gff for BS13633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 95..800 6..714 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:20 Download gff for BS13633.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18023801..18024034 6..242 98 -> Plus
3R 18024093..18024396 243..546 99 -> Plus
3R 18024462..18024629 547..714 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:39:35 Download gff for BS13633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13849523..13849756 6..242 98 -> Plus
arm_3R 13849815..13850118 243..546 99 -> Plus
arm_3R 13850184..13850351 547..714 98   Plus

BS13633.pep Sequence

Translation from 16 to 1383

> BS13633.pep
MSGKGEIIQIHIGQAGVQIANACWELFCLEHGILANGRLTQSPMDDSFLT
FFEFTSHQPCVQPRLVMIDTEPTVIDEIRTGSYRNLFHPDTLITGKDDSG
SNFARGYNLMASELLDRSMNAIRRVADRCRNLRGFLVFRAIGGGSGSGLG
TRIMERLVEDFGKKMTVVEFLVYPSPSISPVIVEPYNALLAAHFSMDCAD
VSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQRFGGGST
VSFQELQTNLVPYPRIHYPLINYAPLVPISHSQFVNMSTAQLTGQCFQMS
NQMVRCNPSHGKYMASVLLYRGDIAPNEINTALENIKRNRSFRFVDWSPT
GFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLY
QRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEVDASAPTSRRDSDPE
EDSLN*

BS13633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-PA 455 CG7794-PA 1..455 1..455 2397 100 Plus
alphaTub84B-PA 450 CG1913-PA 3..435 6..436 1279 53.6 Plus
alphaTub84D-PA 450 CG2512-PA 3..435 6..436 1270 53.6 Plus
alphaTub85E-PA 449 CG9476-PA 3..441 6..442 1264 52.8 Plus
alphaTub67C-PA 462 CG8308-PA 3..461 6..451 1158 48.8 Plus