Clone BS13635 Report

Search the DGRC for BS13635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG31128-RA
Protein status:BS13635.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13635.5prime Sequence

531 bp (531 high quality bases) assembled on 2006-10-13

> BS13635.5prime
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTTGAAAGCTTTCTAGACC

BS13635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-PA 501 CG31128-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 860 CG31128-RA 42..545 14..517 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24469438..24469710 14..286 1365 100 Plus
3R 32079331 3R 24469762..24469995 284..517 1170 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:04:02 has no hits.

BS13635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:33 Download gff for BS13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:52 Download gff for BS13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..545 5..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:27 Download gff for BS13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..545 5..517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:27 Download gff for BS13635.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24469763..24469995 285..517 100   Plus
3R 24469429..24469708 5..284 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:52 Download gff for BS13635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20295151..20295430 5..284 98 -> Plus
arm_3R 20295485..20295717 285..517 100   Plus

BS13635.complete Sequence

533 bp assembled on 2007-10-29

GenBank Submission: KX802286

> BS13635.complete
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTTGAAAGCTTTCTAGACCAT

BS13635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 501 CG31128-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 860 CG31128-RA 42..545 14..517 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24469438..24469710 14..286 1365 100 Plus
3R 32079331 3R 24469762..24469995 284..517 1170 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:29:06 has no hits.

BS13635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:51 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:51 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..545 5..517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:40 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 45..544 17..516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:33 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 45..544 17..516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:31 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 45..544 17..516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:31 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24469763..24469994 285..516 100   Plus
3R 24469441..24469708 17..284 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:40 Download gff for BS13635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20295163..20295430 17..284 100 -> Plus
arm_3R 20295485..20295716 285..516 100   Plus

BS13635.pep Sequence

Translation from 16 to 516

> BS13635.pep
MHTGKCLVAWIIVSLCYIGLGGALKDLKEGKIAEPLCSNCNKIQRKCTVS
HSGLFCKNKTDKEKILFSHSLAEKLYNLDECVPHKYNVTGPILDWCCLWS
PKLGCQQLAGIYYQNQSRWRDTCEICLHSCICDEDTNGVVKCSPTAGCLA
ALGILGILLSRSYLWS*

BS13635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-PA 166 CG31128-PA 1..166 1..166 928 100 Plus