Clone Sequence Records
BS13635.5prime Sequence
531 bp (531 high quality bases) assembled on 2006-10-13
> BS13635.5prime
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTTGAAAGCTTTCTAGACC
BS13635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-PA | 501 | CG31128-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 860 | CG31128-RA | 42..545 | 14..517 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24469438..24469710 | 14..286 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 24469762..24469995 | 284..517 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:04:02 has no hits.
BS13635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:33 Download gff for
BS13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:52 Download gff for
BS13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..545 | 5..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:27 Download gff for
BS13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..545 | 5..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:27 Download gff for
BS13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24469763..24469995 | 285..517 | 100 | | Plus |
3R | 24469429..24469708 | 5..284 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:52 Download gff for
BS13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20295151..20295430 | 5..284 | 98 | -> | Plus |
arm_3R | 20295485..20295717 | 285..517 | 100 | | Plus |
BS13635.complete Sequence
533 bp assembled on 2007-10-29
GenBank Submission: KX802286
> BS13635.complete
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTTGAAAGCTTTCTAGACCAT
BS13635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 501 | CG31128-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 860 | CG31128-RA | 42..545 | 14..517 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24469438..24469710 | 14..286 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 24469762..24469995 | 284..517 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:29:06 has no hits.
BS13635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:51 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:51 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..545 | 5..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:40 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 45..544 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:33 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 45..544 | 17..516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:31 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 45..544 | 17..516 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:31 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24469763..24469994 | 285..516 | 100 | | Plus |
3R | 24469441..24469708 | 17..284 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:40 Download gff for
BS13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20295163..20295430 | 17..284 | 100 | -> | Plus |
arm_3R | 20295485..20295716 | 285..516 | 100 | | Plus |
BS13635.pep Sequence
Translation from 16 to 516
> BS13635.pep
MHTGKCLVAWIIVSLCYIGLGGALKDLKEGKIAEPLCSNCNKIQRKCTVS
HSGLFCKNKTDKEKILFSHSLAEKLYNLDECVPHKYNVTGPILDWCCLWS
PKLGCQQLAGIYYQNQSRWRDTCEICLHSCICDEDTNGVVKCSPTAGCLA
ALGILGILLSRSYLWS*
BS13635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-PA | 166 | CG31128-PA | 1..166 | 1..166 | 928 | 100 | Plus |