Clone Sequence Records
BS13637.3prime Sequence
664 bp (626 high quality bases) assembled on 2006-10-13
> BS13637.3prime
ATGGTCTAGAAAGCTTTTAATCTTTCTTTTCCGGTTCTTTTGGCTTGTCA
TCCTTTGCCTCCTCCTTTTTGTCTTCTCCCTTGGGCGGCTCCTCCTTCTT
GCCCTCCTCTGGCTTTGTGTCCTTCTTTTCGTCCTTCTTGGCTTCCGCCT
TGGCTGGAGGAGCATCCCCTGACATGGAGGCGGCCAGTTGGGTGGCCTTG
GCCAGCACCTCTTCGGCATCTCCGACCATGTAGAAGGCAATCTCCGGGAT
ATCGTCATATTCACCATTCAACAAACGTTTGAAGCCCTCCACACACTTCT
CCACAGGCACCAGCTTTCCCGGGTGTCCAGTGAAGATCTCAGCCACTTGG
AACGGCTGCGAAAGGAAACGCTGCATCTTGCGAGCCCTGGCCACCGTCAA
CTTATCCTCCTCAGACAGTTCATCCATTCCCAGAATGGCGATGATGTCCT
GCAGCGACTTGTAAGCCTGCAGAGTCTTCTGAACTGCTCGAGCCACATTG
TAGTGCTCCTCGCCTACAACATCGGGATCGAGGATGCGGGACGAGGAGTC
CAAGGGATCCACAGCCGGATAAATACCCAACTCAGCAATGGGACGCGAGA
GCACGGTGGTAGCGTCCAAATGCGAAAAGGTAGCCGCCGGAGCAAGATCA
CTGAGATCATCGGC
BS13637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5389-PA | 1869 | CG5389-RA | 1222..1869 | 664..17 | 3215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)72Dt-RA | 2036 | CG5389-RA | 1292..1939 | 664..17 | 3225 | 99.8 | Minus |
| ATPsyn-beta-RC | 2026 | CG11154-RC | 1400..1750 | 649..299 | 450 | 75.6 | Minus |
| ATPsyn-beta-RD | 2048 | CG11154-RD | 1062..1412 | 649..299 | 450 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16099344..16099991 | 664..17 | 3225 | 99.8 | Minus |
| 4 | 1348131 | 4 | 1033931..1034281 | 649..299 | 450 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:52:00 has no hits.
BS13637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:34 Download gff for
BS13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5389-PA | 1222..1869 | 17..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:58 Download gff for
BS13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)72Dt-RA | 1292..1946 | 9..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:55 Download gff for
BS13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)72Dt-RA | 1292..1946 | 9..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:55 Download gff for
BS13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16099344..16099998 | 9..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:58 Download gff for
BS13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16092444..16093098 | 9..664 | 99 | | Minus |
BS13637.complete Sequence
1901 bp assembled on 2010-07-01
GenBank Submission: KX804458
> BS13637.complete
GAAGTTATCAGTCGACATGTTGGTATCATGGGCTAAAATGGCTACAGCAT
GTGCAAGGATTGGCCTGAAGATGGGCCCGGGTACCGGGGGTTACCGGGGC
AACTATCTTGGTAATCCTGTGGTGTTTCCCCGCTACCTTCATGCCTCCCT
GTCCCTTTGGGATGACAAGGATAAGAAAAAGTCGGGCGATGAGTGCGAGC
CCGAGCCGCAGGAAGTCTGCAAGACGGACGCGGAACTGGTTAAGAAGAAG
GATGAAGCCGAGGATGAGTGTGAGGAAAAGAAGTCCGACGGCGGAGGCAA
GAAGCTGGAGAGCAAGGGTCGCAAGGGTGTCATCCATGCTGTCATCGGTC
CCGTCATCGATGTCTACTTCGAGGAGGAGGTTCCGGAGGTGCTCAACGCG
CTCCAGGTGCAGGATGCTCCCATTGCTAACCTAGTGCTGGAGGTATTCCA
CCATCTGGGCAACAATATCGTCCGTTGCGTGGCCATGGATTCCACCGAAG
GACTGCGTCGTGGTCAGCCGGTCCTCGATACCGGCTATCCCATCCGTGTG
GCGGTGGGCAAGGCCGTTTTGGGACGCATCCTCAACGTGGTGGGCGATCC
CATCGACGATCGCGGTGAGGTCAAGTCGGATTTCTACTCCTTTATCCATA
ACGAAGCCCCGGAGCTGACCGACTTGAGCGTGAAGCCAGAGATCCTAGTC
ACTGGCATCAAGGTGATTGATTTGCTGGCTCCCTACGTAAAGGGCGGTAA
GATCGGGCTGTTTGGAGGCGCCGGCGTGGGCAAGACGGTGCTCATCATGG
AGCTGATCAATAACATAGCCAAGTCCCATGGCGGCTACTCCGTATTCGTG
GGCGCAGGAGAGCGTACCCGCGAGGGCAACGATCTGTACCACGAGATGAT
CGAGTCCAAGGTCATCTCCCTGGAGGATGACTCCTCGAAGGTGGTTCTGG
TCTTTGGCCAGATGAACGAGCCCCCGGGCGCTCGCTCCCGTGTGGTGCTC
ACCGGACTGACCATCGCCGAATATTTCCGCGACGTGGACGGGCAGGATGT
GCTGCTCTTCATTGACAACATTTTCCGTTTCACCCAGGCGGGATCGGAGG
TGTCGGCTTTGCTCGGGCGTATTCCCTCGGCGGTGGGCTATCAGCCTACC
TTAGGAACCGACATGGGCACCATGCAGGAACGGATCACTAGTACCCGCAA
CGGTTCCATCACTTCTGTTCAGGCTGTCTACGTGCCCGCCGATGATCTCA
GTGATCCTGCTCCGGCGGCTACCTTTTCGCATTTGGACGCTACCACCGTG
CTCTCGCGTCCCATTGCTGAGTTGGGTATTTATCCGGCTGTGGATCCCTT
GGACTCCTCGTCCCGCATCCTCGATCCCGATGTTGTAGGCGAGGAGCACT
ACAATGTGGCTCGAGCAGTTCAGAAGACTCTGCAGGCTTACAAGTCGCTG
CAGGACATCATCGCCATTCTGGGAATGGATGAACTGTCTGAGGAGGATAA
GTTGACGGTGGCCAGGGCTCGCAAGATGCAGCGTTTCCTTTCGCAGCCGT
TCCAAGTGGCTGAGATCTTCACTGGACACCCGGGAAAGCTGGTGCCTGTG
GAGAAGTGTGTGGAGGGCTTCAAACGTTTGTTGAATGGTGAATATGACGA
TATCCCGGAGATTGCCTTCTACATGGTCGGAGATGCCGAAGAGGTGCTGG
CCAAGGCCACCCAACTGGCCGCCTCCATGTCAGGGGATGCTCCTCCAGCC
AAGGCGGAAGCCAAGAAGGACGAAAAGAAGGACACAAAGCCAGAGGAGGG
CAAGAAGGAGGAGCCGCCCAAGGGAGAAGACAAAAAGGAGGAGGCAAAGG
ATGACAAGCCAAAAGAACCGGAAAAGAAAGATTAAAAGCTTTCTAGACCA
T
BS13637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)72Dt-RA | 1869 | CG5389-PA | 1..1869 | 17..1885 | 9270 | 99.7 | Plus |
| ATPsyn-beta-RC | 1536 | CG11154-PC | 485..1404 | 684..1603 | 1150 | 75 | Plus |
| ATPsyn-beta-RD | 1518 | CG11154-PD | 467..1386 | 684..1603 | 1150 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)72Dt-RA | 2036 | CG5389-RA | 71..1939 | 17..1885 | 9270 | 99.7 | Plus |
| ATPsyn-beta-RC | 2026 | CG11154-RC | 831..1750 | 684..1603 | 1150 | 75 | Plus |
| ATPsyn-beta-RD | 2048 | CG11154-RD | 493..1412 | 684..1603 | 1150 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16098547..16099991 | 441..1885 | 7150 | 99.7 | Plus |
| 3L | 28110227 | 3L | 16097996..16098395 | 46..445 | 2000 | 100 | Plus |
| 4 | 1348131 | 4 | 1033362..1034281 | 684..1603 | 1150 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:03:53 has no hits.
BS13637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 09:02:28 Download gff for
BS13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5389-RA | 76..1925 | 22..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:39 Download gff for
BS13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)72Dt-RA | 76..1925 | 22..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:18 Download gff for
BS13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)72Dt-RA | 76..1925 | 22..1871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:18 Download gff for
BS13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16097909..16097934 | 22..47 | 100 | -> | Plus |
| 3L | 16097998..16098392 | 48..442 | 100 | -> | Plus |
| 3L | 16098549..16099977 | 443..1871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:39 Download gff for
BS13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16091009..16091034 | 22..47 | 100 | -> | Plus |
| arm_3L | 16091098..16091492 | 48..442 | 100 | -> | Plus |
| arm_3L | 16091649..16093077 | 443..1871 | 99 | | Plus |
BS13637.pep Sequence
Translation from 16 to 1884
> BS13637.pep
MLVSWAKMATACARIGLKMGPGTGGYRGNYLGNPVVFPRYLHASLSLWDD
KDKKKSGDECEPEPQEVCKTDAELVKKKDEAEDECEEKKSDGGGKKLESK
GRKGVIHAVIGPVIDVYFEEEVPEVLNALQVQDAPIANLVLEVFHHLGNN
IVRCVAMDSTEGLRRGQPVLDTGYPIRVAVGKAVLGRILNVVGDPIDDRG
EVKSDFYSFIHNEAPELTDLSVKPEILVTGIKVIDLLAPYVKGGKIGLFG
GAGVGKTVLIMELINNIAKSHGGYSVFVGAGERTREGNDLYHEMIESKVI
SLEDDSSKVVLVFGQMNEPPGARSRVVLTGLTIAEYFRDVDGQDVLLFID
NIFRFTQAGSEVSALLGRIPSAVGYQPTLGTDMGTMQERITSTRNGSITS
VQAVYVPADDLSDPAPAATFSHLDATTVLSRPIAELGIYPAVDPLDSSSR
ILDPDVVGEEHYNVARAVQKTLQAYKSLQDIIAILGMDELSEEDKLTVAR
ARKMQRFLSQPFQVAEIFTGHPGKLVPVEKCVEGFKRLLNGEYDDIPEIA
FYMVGDAEEVLAKATQLAASMSGDAPPAKAEAKKDEKKDTKPEEGKKEEP
PKGEDKKEEAKDDKPKEPEKKD*
BS13637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)72Dt-PA | 622 | CG5389-PA | 1..622 | 1..622 | 3192 | 100 | Plus |
| ATPsyn-beta-PD | 505 | CG11154-PD | 38..501 | 104..568 | 1824 | 76.1 | Plus |
| ATPsyn-beta-PA | 505 | CG11154-PA | 38..501 | 104..568 | 1824 | 76.1 | Plus |
| ATPsyn-beta-PC | 511 | CG11154-PC | 44..507 | 104..568 | 1824 | 76.1 | Plus |
| Vha68-3-PA | 743 | CG5075-PA | 349..644 | 227..510 | 330 | 31.7 | Plus |
