Clone Sequence Records
BS13640.3prime Sequence
741 bp (690 high quality bases) assembled on 2006-10-13
> BS13640.3prime
ATGGTCTAGAAAGCTTCTAGAGCATGTCCCGATCCACCATATCAATGACT
ATTTCCGACATCTTCTGGCGGCACAGGTCGTTGGGTGGAAAGTTAAGCGT
TGGCGCGCCCACATCCTCCCCGAGTTCATCGCTTCGATCCAAATACATAT
CGGGAGCATCCTCCGAAGAGCAGGTGCTAATAGGCAGGATATCCAATGCC
AAACCAAGTGCAAAGCGTCCGTATGTCTTCAGCTCCTCGGCAAAAAGATC
CTGCAGCTTCTGTAACGTGTCGCAGTGGTCCGGCAAATTTGTGCAGAGCA
TTTGCAGCCATCGAAACAGCTCCTCCGTATAGATCTTGAGCAGAGTCTGC
AGCTGAGCATCGCGCATTTCCTTGGTGGTGCAGCAGTACAGCAGATTGGC
AATGTCCAGTGCGATCGAGCTGTAGCGTATCAGCTGAAAGTCGAGCAGCG
CCACCTCAAGCACTCGGTGTGGATCCTCCGGATCATAGTGGTACAGAAAG
TTGTTCACCCAACAGTCGCCGTGGCAAATGGCCGATAACGGCGACTCGGT
ACTGGCCAACTTCACCATCCGGCCGAAGAATGAGGAGCTTTCTGCGAATT
TGTTCATTGCCAGGACATACTTGGAGTCGGGGGGCAGCACCTCGGACACC
ATCTGAATGGCGTTCTTGGTAAGGCGCTCGTAGTAGTTTCGATACCAACT
CGTATTGGCCGTGCAGAATATGCCCTCGCTGATCCTGCTGC
BS13640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-PA | 1317 | CG14314-RA | 593..1317 | 741..17 | 3475 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1606 | CG14314-RA | 748..1472 | 741..17 | 3535 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18217097..18217592 | 741..246 | 2420 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18217652..18217880 | 245..17 | 1115 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:17:05 has no hits.
BS13640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:35 Download gff for
BS13640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-PA | 593..1317 | 17..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:55 Download gff for
BS13640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 748..1474 | 13..741 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:11 Download gff for
BS13640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 748..1474 | 13..741 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:11 Download gff for
BS13640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18217097..18217592 | 246..741 | 99 | -> | Minus |
| 3R | 18217652..18217880 | 17..245 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:55 Download gff for
BS13640.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14042819..14043314 | 246..741 | 99 | -> | Minus |
| arm_3R | 14043374..14043602 | 17..245 | 99 | -> | Minus |
BS13640.5prime Sequence
747 bp (697 high quality bases) assembled on 2006-10-13
> BS13640.5prime
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCATTCAGATGG
TGTCCGAGGTGGCTGCCCCCGACTCCAAGTATGTCCTGGCAATGAAC
BS13640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-PA | 1317 | CG14314-RA | 1..674 | 17..690 | 3145 | 98.6 | Plus |
| CG14314-PA | 1317 | CG14314-RA | 701..732 | 716..747 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1606 | CG14314-RA | 156..887 | 17..747 | 3455 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18216946..18217236 | 458..747 | 1300 | 97.3 | Plus |
| 3R | 32079331 | 3R | 18216525..18216690 | 159..324 | 785 | 98.2 | Plus |
| 3R | 32079331 | 3R | 18216297..18216440 | 17..160 | 690 | 98.6 | Plus |
| 3R | 32079331 | 3R | 18216750..18216884 | 324..458 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:46 has no hits.
BS13640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:35 Download gff for
BS13640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-PA | 1..732 | 17..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:12 Download gff for
BS13640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..887 | 17..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:05 Download gff for
BS13640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..887 | 17..747 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:05 Download gff for
BS13640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18216297..18216440 | 17..160 | 98 | -> | Plus |
| 3R | 18216527..18216690 | 161..324 | 98 | -> | Plus |
| 3R | 18216751..18216884 | 325..458 | 99 | -> | Plus |
| 3R | 18216947..18217236 | 459..747 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:12 Download gff for
BS13640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14042019..14042162 | 17..160 | 98 | -> | Plus |
| arm_3R | 14042249..14042412 | 161..324 | 98 | -> | Plus |
| arm_3R | 14042473..14042606 | 325..458 | 99 | -> | Plus |
| arm_3R | 14042669..14042958 | 459..747 | 97 | | Plus |
BS13640.complete Sequence
1349 bp assembled on 2006-11-01
GenBank Submission: FJ637494
> BS13640.complete
GAAGTTATCAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTA
CCGGACTGGGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTC
GAGGTGTTCCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGA
TGCCTTCGAGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCG
CCCTGTATCGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAA
CAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC
CTACAAGAGCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCA
TCATGCCGGAACTGCTCAAGTTCCAGGCGAGCAAAACGAACCAGGACACA
CCCGTGTTTAATGCCATTCCCAAGTGCTATTCAGCCAGGCATGATCTGCT
CATAATGGAGGATCTTCGCGAACGTGGCTTTCAGATGTCCGACCGCCACA
AAGGCCTCAGTCTGGAGGAGACGCAGTCCGTCCTGCTGCAGGTGGCCCAG
CTGCACGGCCTTAGTCTAGCCTACAAGTTCGAGAAACCGCTGGAGTTTAG
CAATCTGTGCAGCATGATCAGCGAGGGCATATTCTGCACGGCCAATACGA
GTTGGTATCGAAACTACTACGAGCGCCTTACCAAGAACGCCATTCAGATG
GTGTCCGAGGTGCTGCCCCCCGACTCCAAGTATGTCCTGGCAATGAACAA
ATTCGCAGAAAGCTCCTCATTCTTCGGCCGGATGGTGAAGTTGGCCAGTA
CCGAGTCGCCGTTATCGGCCATTTGCCACGGCGACTGTTGGGTGAACAAC
TTTCTGTACCACTATGATCCGGAGGATCCACACCGAGTGCTTGAGGTGGC
GCTGCTCGACTTTCAGCTGATACGCTACAGCTCGATCGCACTGGACATTG
CCAATCTGCTGTACTGCTGCACCACCAAGGAAATGCGCGATGCTCAGCTG
CAGACTCTGCTCAAGATCTATACGGAGGAGCTGTTTCGATGGCTGCAAAT
GCTCTGCACAAATTTGCCGGACCACTGCGACACGTTACAGAAGCTGCAGG
ATCTTTTTGCCGAGGAGCTGAAGACATACGGACGCTTTGCACTTGGTTTG
GCATTGGATATCCTGCCTATTAGCACCTGCTCTTCGGAGGATGCTCCCGA
TATGTATTTGGATCGAAGCGATGAACTCGGGGAGGATGTGGGCGCGCCAA
CGCTTAACTTTCCACCCAACGACCTGTGCCGCCAGAAGATGTCGGAAATA
GTCATTGATATGGTGGATCGGGACATGCTCTAGAAGCTTTCTAGACCAT
BS13640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1317 | CG14314-PA | 1..1317 | 17..1333 | 6405 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1606 | CG14314-RA | 156..1472 | 17..1333 | 6405 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18216946..18217592 | 458..1104 | 3175 | 99.4 | Plus |
| 3R | 32079331 | 3R | 18217652..18217880 | 1105..1333 | 1115 | 99.1 | Plus |
| 3R | 32079331 | 3R | 18216525..18216690 | 159..324 | 785 | 98.2 | Plus |
| 3R | 32079331 | 3R | 18216297..18216440 | 17..160 | 690 | 98.6 | Plus |
| 3R | 32079331 | 3R | 18216750..18216884 | 324..458 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:16:18 has no hits.
BS13640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:46 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:16 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 164..1482 | 17..1337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:30 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..1472 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:46 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 164..1482 | 17..1337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:06 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..1472 | 17..1333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:06 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18216297..18216440 | 17..160 | 98 | -> | Plus |
| 3R | 18216527..18216690 | 161..324 | 98 | -> | Plus |
| 3R | 18216751..18216884 | 325..458 | 99 | -> | Plus |
| 3R | 18216947..18217592 | 459..1104 | 99 | -> | Plus |
| 3R | 18217652..18217880 | 1105..1333 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:30 Download gff for
BS13640.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14042019..14042162 | 17..160 | 98 | -> | Plus |
| arm_3R | 14042249..14042412 | 161..324 | 98 | -> | Plus |
| arm_3R | 14042473..14042606 | 325..458 | 99 | -> | Plus |
| arm_3R | 14042669..14043314 | 459..1104 | 99 | -> | Plus |
| arm_3R | 14043374..14043602 | 1105..1333 | 99 | | Plus |
BS13640.pep Sequence
Translation from 16 to 1332
> BS13640.pep
MGITETAATTTTGLGAANAVESKQILSLEVFQDIFKHVEPDVQIDAFELA
QGSDRGDNYTAALYRIKLTGKRRSLKWEQNVICKVMPESVVAREAYKSDK
LFRNEVQFYNTIMPELLKFQASKTNQDTPVFNAIPKCYSARHDLLIMEDL
RERGFQMSDRHKGLSLEETQSVLLQVAQLHGLSLAYKFEKPLEFSNLCSM
ISEGIFCTANTSWYRNYYERLTKNAIQMVSEVLPPDSKYVLAMNKFAESS
SFFGRMVKLASTESPLSAICHGDCWVNNFLYHYDPEDPHRVLEVALLDFQ
LIRYSSIALDIANLLYCCTTKEMRDAQLQTLLKIYTEELFRWLQMLCTNL
PDHCDTLQKLQDLFAEELKTYGRFALGLALDILPISTCSSEDAPDMYLDR
SDELGEDVGAPTLNFPPNDLCRQKMSEIVIDMVDRDML*
BS13640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-PA | 438 | CG14314-PA | 1..438 | 1..438 | 2278 | 100 | Plus |
| CG2004-PG | 425 | CG2004-PG | 33..384 | 46..396 | 434 | 28.3 | Plus |
| CG2004-PF | 425 | CG2004-PF | 33..384 | 46..396 | 434 | 28.3 | Plus |
| CG2004-PD | 425 | CG2004-PD | 33..384 | 46..396 | 434 | 28.3 | Plus |
| CG2004-PC | 425 | CG2004-PC | 33..384 | 46..396 | 434 | 28.3 | Plus |
