Clone Sequence Records
BS13641.complete Sequence
1709 bp assembled on 2009-12-07
GenBank Submission: KX805298
> BS13641.complete
GAAGTTATCAGTCGACATGCTGAGCAGATTGGGCCGGAGTGGTCGGGCCG
GTGTGCGCACCTTTGCCAATGACATTCGCTTTGGAGCCGAGGCGCGCTGC
CTGCTTATGCAGGGCGTGAACGTCCTGGCCAACGCGGTGGCCACCACTCT
GGGCCCGAAGGGCAGGAACGTGCTCATCGAACAGCTGCTGATCTCGCCCC
GGATCACCAAGGATGGCATCACGGTGGCGAATAACGTGCAGCTGGGCAAT
CGTCGGCAGGATATGGGAGTTCAATTGCTGCGCCAGGCCACCAATAATAC
CAATAATAAGGTAGGCGATGGCACCACCACGGCCACTATTCTGGCCCGTG
GAATAGCCTGCCAGGGTATGCATGTGTTGCGCCAGAGCAAGGTGAACGTC
CAACTCCTGCGGGAGGGCATTCTCGAGGGATCGCGCGCTGTGTGCGATGC
TCTAGGTGAGATGTCCCAGTCGGTGGATACTATTGGCCAAGTGGAAGCAG
TGGCCAAGGTGGCACTGAATGGAGACGAACGGCTGGCGGAGCTGATTGGT
GACATCATTTTGGAGCTGGGCGATAGCGGCGTCATCCTGCTGAAGGAATC
CCACAGTCCCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCGCTT
CGGGCTACTATTCGCCATTCTTTGCCAAGCAATCTCATACCCTGGAATTG
GAGAATTGCTTGCTGCTGCTCACTTTGGCTAAGATTGATCAAGTGGAACA
GATACTTCCCGCTCTCGAGCTGGCCAGACTAAAAGAACGACCCCTTCTGA
TCATTGCCAAAAATTTTGGTAGCGATTTGCTTAAGATCTTAGTGCTAAAT
AATCTGCAAGGTCGAGTTCAGGTCTGTGCTGTGAAGGCTCCAAGCTTTGG
GGACGAGCAGTGCGAGGAAATGGAGGATATAGCTTTTGCCACCGGTGGCC
ATCTTCTGGAGGATGCCTCCAGTCTGGCGGATCTCAGCGAGGAGGATCTG
GGTGAGGTGATGGAGGCGGTGGTGGACGCTAAGGAAACGCACCTATTGCA
ACCGATCAATGTGAACGAGGAGCAGGTGCAGTGCCGCATCCAGGACATTC
GTGAGCTGATCGATGAGGCTTTCACCGATGTGGAACTGGATCGCCTGAAA
ACACGACTTGGTCGCTTGCAGGGCCACCTGGCCACCATTTTCGTGGGCGG
TACCAGTGAGCTGGAGGTGAGCGAGCGAAAGGATCGCTTCAACGATGCCC
TTCACGCCGTTCGAGTGGCCATAAGTGATGGTGTGGTTCCCGGAGGAGGA
ACCGCCTATCTACGATGTATTCCAGTTCTGGACGAGTTGCCGCCAACCGA
TATAATGGAGCTCCAGGTTGGCAGGGAGATTGTAAAGGACGCTTTACGAC
TACCATGCTATACAATTGCCCGGAATGCTGGAGTGGACCCCAACGAGGTA
CTACGTCGGGTTTTAAAGGGCAGTGGCAACTACGGATATGATGCCGCCGC
TGGGGAATTCGGCGATCTTGTGGTCCGGGGAATTGTGGATCCCACAAAAG
TGTTGCAATCAGCCATGACGTCTGCCGCAGGAATTGCCTCCCTTTTGGCC
ACCACCGAGGTGCTCATCACTAAACAACCCACCAAACCGAAGATTCCGAA
AAATCAGGTCACCAAGGATCTTGCTAAACTTGTTGGAATGTAGAAGCTTT
CTAGACCAT
BS13641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1677 | CG16954-PB | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| Hsp60D-RA | 1677 | CG16954-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 152..1828 | 17..1693 | 8385 | 100 | Plus |
| Hsp60D-RA | 1894 | CG16954-RA | 86..1762 | 17..1693 | 8385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13447670..13449346 | 1693..17 | 8385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:50 has no hits.
BS13641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:15 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RB | 146..1822 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:29 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 86..1762 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:19 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RB | 146..1822 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:26 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 86..1762 | 17..1693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:26 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13447670..13449346 | 17..1693 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:29 Download gff for
BS13641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13447670..13449346 | 17..1693 | 100 | | Minus |
BS13641.5prime Sequence
727 bp (604 high quality bases) assembled on 2006-10-13
> BS13641.5prime
GAAGTTATCAGTCGACATGCTGAGCAGATTGGGCCGGAGTGGTCGGGCCG
GTGTGCGCACCTTTGCCAATGACATTCGCTTTGGAGCCGAGGCGCGCTGC
CTGCTTATGCAGGGCGTGAACGTCCTGGCCAACGCGGTGGCCACCACTCT
GGGCCCGAAGGGCAGGAACGTGCTCATCGAACAGCTGCTGATCTCGCCCC
GGATCACCAAGGATGGCATCACGGTGGCGAATAACGTGCAGCTGGGCAAT
CGTCGGCAGGATATGGGAGTTCAATTGCTGCGCCAGGCCACCAATAATAC
CAATAATAAGGTAGGCGATGGCACCACCACGGCCACTATTCTGGCCCGTG
GAATAGCCTGCCAGGGTATGCATGTGTTGCGCCAGAGCAAGGTGAACGTC
CAACTCCTGCGGGAGGGCATTCTCGAGGGATCGCGCGCTGTGTGCGATGC
TCTAGGTGAGATGTCCCAGTCGGTGGATACTATTGGCCAAGTGGAAGCAG
TGGCCAAGGTGGCACTGAATGGAGACGAACGGCTGGCGGAGCTGATTGGT
GACATCATTTTGGAGCTGGGCGATAGCGGCGTCATCCTGCTGAAGGAATC
CCACAGTCCCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCGCTT
CGGGCTACTATTCGCCATTCTTTGCCAAGCAATCTCATACCCTGGAAATT
GGAGAATTGCTTGCTGCTGCTCACTTT
BS13641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16954-PA | 1677 | CG16954-RA | 1..710 | 17..727 | 3515 | 99.8 | Plus |
| CG16954-PB | 1677 | CG16954-RB | 1..710 | 17..727 | 3515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 152..861 | 17..727 | 3530 | 99.9 | Plus |
| Hsp60D-RA | 1894 | CG16954-RA | 86..795 | 17..727 | 3530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13448637..13449346 | 727..17 | 3505 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:40:00 has no hits.
BS13641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:35 Download gff for
BS13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16954-PB | 1..710 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:45 Download gff for
BS13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 80..795 | 7..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:01 Download gff for
BS13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 80..795 | 7..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:01 Download gff for
BS13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13448637..13449352 | 7..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:45 Download gff for
BS13641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13448637..13449352 | 7..727 | 99 | | Minus |
BS13641.pep Sequence
Translation from 16 to 1692
> BS13641.pep
MLSRLGRSGRAGVRTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGR
NVLIEQLLISPRITKDGITVANNVQLGNRRQDMGVQLLRQATNNTNNKVG
DGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVCDALGEMS
QSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFD
EAKIQEGITIASGYYSPFFAKQSHTLELENCLLLLTLAKIDQVEQILPAL
ELARLKERPLLIIAKNFGSDLLKILVLNNLQGRVQVCAVKAPSFGDEQCE
EMEDIAFATGGHLLEDASSLADLSEEDLGEVMEAVVDAKETHLLQPINVN
EEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSELE
VSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQ
VGREIVKDALRLPCYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGD
LVVRGIVDPTKVLQSAMTSAAGIASLLATTEVLITKQPTKPKIPKNQVTK
DLAKLVGM*
BS13641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-PB | 558 | CG16954-PB | 1..558 | 1..558 | 2779 | 100 | Plus |
| Hsp60D-PA | 558 | CG16954-PA | 1..558 | 1..558 | 2779 | 100 | Plus |
| Hsp60-PB | 573 | CG12101-PB | 8..552 | 2..544 | 1133 | 43.4 | Plus |
| Hsp60-PA | 573 | CG12101-PA | 8..552 | 2..544 | 1133 | 43.4 | Plus |
| Hsp60C-PB | 576 | CG7235-PB | 24..550 | 14..538 | 1120 | 44.3 | Plus |
