Clone BS13642 Report

Search the DGRC for BS13642

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4270-RA
Protein status:BS13642.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13642.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13642.3prime
ATGGTCTAGAAAGCTTTTATTGCTTTGGCGGCACATTATCCTTGAACAAA
CCCACAACATTGCCGGGAGGATTGTAGTTGCAAACCACCCAAGTTCTATC
CGCTTTTCGGGCCACACCCGAACCCATTTCCACCGACGACTTCCAAATGA
GCTGAGTAAAGTGTCCAGCGGTGGGCACAAACTGCGCCTTGTTGAAATCG
TAGCTATTGATTTCCCGATACCACATTTCCACCGGCAGATCACCGGTCAC
ATCCATTCCACCGGAGAGGAAAATGTTTTCGCCATACTTGGGATTGGGTC
TGTGCGCCATTGTGTTCTGATCGCGGAGATGATTGGCCCATTCCTGAGCC
AGCTTATTTAGTGCAGCATTAATGGTCACCGCGGGACAGCCGTGCATTGC
CCGATATTTATTGGTGGTATTGAAGACCTCCTTCAGGAAGAGCTCATTGT
TGCCCTTGGTATCCTGACCCCTGGGACCTGGAGGGCGCTCGTGGGTTTTG
GGAATGGGCGCTACGTTTCTCTTCGCCATGTCGACTGATAACT

BS13642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 513 CG4270-RA 1..513 529..17 2515 99.6 Minus
CG4270-PB 429 CG4270-RB 1..425 529..105 2075 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..629 529..17 2535 99.6 Minus
CG4270-RB 584 CG4270-RB 117..541 529..105 2095 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 331..105 1120 99.6 Minus
2L 23513712 2L 2263558..2263755 529..332 975 99.5 Minus
2L 23513712 2L 2264097..2264184 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:05:53 has no hits.

BS13642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for BS13642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 17..529 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:08 Download gff for BS13642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 12..536 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:02 Download gff for BS13642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 12..536 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:02 Download gff for BS13642.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2263552..2263755 332..536 97 -> Minus
2L 2263816..2264042 105..331 99 -> Minus
2L 2264097..2264186 12..104 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:08 Download gff for BS13642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2263816..2264042 105..331 99 -> Minus
arm_2L 2264097..2264186 12..104 96   Minus
arm_2L 2263552..2263755 332..536 97 -> Minus

BS13642.5prime Sequence

543 bp (500 high quality bases) assembled on 2006-10-13

> BS13642.5prime
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAATAAAAGCTTTCTAGACC

BS13642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 513 CG4270-RA 1..513 17..529 2515 99.6 Plus
CG4270-PB 429 CG4270-RB 1..425 17..441 2075 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..629 17..529 2535 99.6 Plus
CG4270-RB 584 CG4270-RB 117..541 17..441 2095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 215..441 1120 99.6 Plus
2L 23513712 2L 2263558..2263755 17..214 975 99.5 Plus
2L 23513712 2L 2264097..2264184 442..529 440 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:17:27 has no hits.

BS13642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for BS13642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 17..529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:01 Download gff for BS13642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 10..534 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:14 Download gff for BS13642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 10..534 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:14 Download gff for BS13642.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2263552..2263755 10..214 97 -> Plus
2L 2263816..2264042 215..441 99 -> Plus
2L 2264097..2264186 442..534 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:01 Download gff for BS13642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2263552..2263755 10..214 97 -> Plus
arm_2L 2263816..2264042 215..441 99 -> Plus
arm_2L 2264097..2264186 442..534 96   Plus

BS13642.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637495

> BS13642.complete
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAATAAAAGCTTTCTAGACCAT

BS13642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 513 CG4270-PA 1..513 17..529 2535 99.6 Plus
CG4270-RB 429 CG4270-PB 1..425 17..441 2095 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..629 17..529 2535 99.6 Plus
CG4270-RB 584 CG4270-RB 117..541 17..441 2095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 215..441 1120 99.6 Plus
2L 23513712 2L 2263558..2263755 17..214 975 99.5 Plus
2L 23513712 2L 2264097..2264184 442..529 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:52:38 has no hits.

BS13642.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:24 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 1..513 17..529 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:52 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 89..609 10..534 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:32 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 117..627 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:24 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 89..609 10..534 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:34 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 117..627 17..527 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:34 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2263816..2264042 215..441 99 -> Plus
2L 2264097..2264182 442..527 100   Plus
2L 2263558..2263755 17..214 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:32 Download gff for BS13642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2263816..2264042 215..441 99 -> Plus
arm_2L 2264097..2264182 442..527 100   Plus
arm_2L 2263558..2263755 17..214 99 -> Plus

BS13642.pep Sequence

Translation from 16 to 528

> BS13642.pep
MAKRNVAPIPKTHERPPGPRGQDTKGNNELFLKEVFNTTNKYRAMHGCPA
VTINAALNKLAQEWANHLRDQNTMAHRPNPKYGENIFLSGGMDVTGDLPV
EMWYREINSYDFNKAQFVPTAGHFTQLIWKSSVEMGSGVARKADRTWVVC
NYNPPGNVVGLFKDNVPPKQ*

BS13642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 170 CG4270-PA 1..170 1..170 934 100 Plus
CG4270-PB 142 CG4270-PB 1..142 1..142 772 100 Plus
CG16995-PA 146 CG16995-PA 6..143 31..168 374 48.6 Plus
CG34049-PB 306 CG34049-PB 149..284 35..170 316 44.1 Plus
CG31482-PA 195 CG31482-PA 28..159 37..168 236 39.3 Plus