Clone Sequence Records
BS13642.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13642.3prime
ATGGTCTAGAAAGCTTTTATTGCTTTGGCGGCACATTATCCTTGAACAAA
CCCACAACATTGCCGGGAGGATTGTAGTTGCAAACCACCCAAGTTCTATC
CGCTTTTCGGGCCACACCCGAACCCATTTCCACCGACGACTTCCAAATGA
GCTGAGTAAAGTGTCCAGCGGTGGGCACAAACTGCGCCTTGTTGAAATCG
TAGCTATTGATTTCCCGATACCACATTTCCACCGGCAGATCACCGGTCAC
ATCCATTCCACCGGAGAGGAAAATGTTTTCGCCATACTTGGGATTGGGTC
TGTGCGCCATTGTGTTCTGATCGCGGAGATGATTGGCCCATTCCTGAGCC
AGCTTATTTAGTGCAGCATTAATGGTCACCGCGGGACAGCCGTGCATTGC
CCGATATTTATTGGTGGTATTGAAGACCTCCTTCAGGAAGAGCTCATTGT
TGCCCTTGGTATCCTGACCCCTGGGACCTGGAGGGCGCTCGTGGGTTTTG
GGAATGGGCGCTACGTTTCTCTTCGCCATGTCGACTGATAACT
BS13642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 513 | CG4270-RA | 1..513 | 529..17 | 2515 | 99.6 | Minus |
CG4270-PB | 429 | CG4270-RB | 1..425 | 529..105 | 2075 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..629 | 529..17 | 2535 | 99.6 | Minus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 529..105 | 2095 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 331..105 | 1120 | 99.6 | Minus |
2L | 23513712 | 2L | 2263558..2263755 | 529..332 | 975 | 99.5 | Minus |
2L | 23513712 | 2L | 2264097..2264184 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:05:53 has no hits.
BS13642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for
BS13642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 17..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:08 Download gff for
BS13642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 12..536 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:02 Download gff for
BS13642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 12..536 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:02 Download gff for
BS13642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2263552..2263755 | 332..536 | 97 | -> | Minus |
2L | 2263816..2264042 | 105..331 | 99 | -> | Minus |
2L | 2264097..2264186 | 12..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:08 Download gff for
BS13642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2263816..2264042 | 105..331 | 99 | -> | Minus |
arm_2L | 2264097..2264186 | 12..104 | 96 | | Minus |
arm_2L | 2263552..2263755 | 332..536 | 97 | -> | Minus |
BS13642.5prime Sequence
543 bp (500 high quality bases) assembled on 2006-10-13
> BS13642.5prime
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAATAAAAGCTTTCTAGACC
BS13642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 513 | CG4270-RA | 1..513 | 17..529 | 2515 | 99.6 | Plus |
CG4270-PB | 429 | CG4270-RB | 1..425 | 17..441 | 2075 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..629 | 17..529 | 2535 | 99.6 | Plus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 17..441 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 215..441 | 1120 | 99.6 | Plus |
2L | 23513712 | 2L | 2263558..2263755 | 17..214 | 975 | 99.5 | Plus |
2L | 23513712 | 2L | 2264097..2264184 | 442..529 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:17:27 has no hits.
BS13642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for
BS13642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 17..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:01 Download gff for
BS13642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:14 Download gff for
BS13642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 10..534 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:14 Download gff for
BS13642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2263552..2263755 | 10..214 | 97 | -> | Plus |
2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
2L | 2264097..2264186 | 442..534 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:01 Download gff for
BS13642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2263552..2263755 | 10..214 | 97 | -> | Plus |
arm_2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
arm_2L | 2264097..2264186 | 442..534 | 96 | | Plus |
BS13642.complete Sequence
545 bp assembled on 2006-11-01
GenBank Submission: FJ637495
> BS13642.complete
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAATAAAAGCTTTCTAGACCAT
BS13642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 513 | CG4270-PA | 1..513 | 17..529 | 2535 | 99.6 | Plus |
CG4270-RB | 429 | CG4270-PB | 1..425 | 17..441 | 2095 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..629 | 17..529 | 2535 | 99.6 | Plus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 17..441 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 215..441 | 1120 | 99.6 | Plus |
2L | 23513712 | 2L | 2263558..2263755 | 17..214 | 975 | 99.5 | Plus |
2L | 23513712 | 2L | 2264097..2264184 | 442..529 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:52:38 has no hits.
BS13642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:24 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 1..513 | 17..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:52 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 89..609 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:32 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 117..627 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:24 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 89..609 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:34 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 117..627 | 17..527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:34 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
2L | 2264097..2264182 | 442..527 | 100 | | Plus |
2L | 2263558..2263755 | 17..214 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:32 Download gff for
BS13642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
arm_2L | 2264097..2264182 | 442..527 | 100 | | Plus |
arm_2L | 2263558..2263755 | 17..214 | 99 | -> | Plus |
BS13642.pep Sequence
Translation from 16 to 528
> BS13642.pep
MAKRNVAPIPKTHERPPGPRGQDTKGNNELFLKEVFNTTNKYRAMHGCPA
VTINAALNKLAQEWANHLRDQNTMAHRPNPKYGENIFLSGGMDVTGDLPV
EMWYREINSYDFNKAQFVPTAGHFTQLIWKSSVEMGSGVARKADRTWVVC
NYNPPGNVVGLFKDNVPPKQ*
BS13642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 170 | CG4270-PA | 1..170 | 1..170 | 934 | 100 | Plus |
CG4270-PB | 142 | CG4270-PB | 1..142 | 1..142 | 772 | 100 | Plus |
CG16995-PA | 146 | CG16995-PA | 6..143 | 31..168 | 374 | 48.6 | Plus |
CG34049-PB | 306 | CG34049-PB | 149..284 | 35..170 | 316 | 44.1 | Plus |
CG31482-PA | 195 | CG31482-PA | 28..159 | 37..168 | 236 | 39.3 | Plus |