Clone BS13643 Report

Search the DGRC for BS13643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG14505-RB
Protein status:BS13643.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13643.3prime Sequence

390 bp (390 high quality bases) assembled on 2006-10-13

> BS13643.3prime
ATGGTCTAGAAAGCTTTCAGGACTGCTTCTCCTTTCGCTTCCCCAGTGGC
TCTCGTCCAAAGCCATATTTCTCGCCATACAGCGGACTTATCCCTGCCAG
CAATTGATGGGCGGACTCATAGACAGTGTCACAATTGGCCACCTCATCGG
CCACATCATCGAACTCATAGGACACGATCCGATAGCCAGCGCGACTTAGT
TGCACACAATAGATGACCTGCTCCAAGGTGCGAATATTGATGTAGGCCAC
GCCGCGACAATGGGGTAGAAATTCGGCCACGATCAAGTGGTCCGCAAAGT
CCTGGCACGAGTCCACCATCCTTTGCGCCTCTCGAAGCGCATGGAAGTCG
TTTTCATCACTCTGGACGAGAGCCATGTCGACTGATAACT

BS13643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-PB 360 CG14505-RB 1..360 376..17 1700 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-RB 956 CG14505-RB 26..385 376..17 1740 98.9 Minus
CG14505-RC 1033 CG14505-RC 26..385 376..17 1740 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18303593..18303952 17..376 1740 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:17 has no hits.

BS13643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for BS13643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-PB 1..360 17..376 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:05 Download gff for BS13643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 17..385 17..388 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:46 Download gff for BS13643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 17..385 17..388 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:46 Download gff for BS13643.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18303593..18303960 17..388 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:05 Download gff for BS13643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14191098..14191465 17..388 97   Plus

BS13643.5prime Sequence

390 bp (390 high quality bases) assembled on 2006-10-13

> BS13643.5prime
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCTGAAAGCTTTCTAGACC

BS13643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-PB 360 CG14505-RB 1..360 17..376 1700 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-RB 956 CG14505-RB 26..385 17..376 1740 98.9 Plus
CG14505-RC 1033 CG14505-RC 26..385 17..376 1740 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18303593..18303952 376..17 1740 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:50 has no hits.

BS13643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:37 Download gff for BS13643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-PB 1..360 17..376 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:21 Download gff for BS13643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 17..385 5..376 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:44 Download gff for BS13643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 17..385 5..376 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:44 Download gff for BS13643.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18303593..18303960 5..376 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:21 Download gff for BS13643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14191098..14191465 5..376 97   Minus

BS13643.complete Sequence

392 bp assembled on 2006-11-01

GenBank Submission: FJ637496

> BS13643.complete
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCTGAAAGCTTTCTAGACCAT

BS13643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-RB 360 CG14505-PB 1..360 17..376 1740 98.9 Plus
CG14505-RC 360 CG14505-PC 1..360 17..376 1740 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-RB 956 CG14505-RB 26..385 17..376 1740 98.9 Plus
CG14505-RC 1033 CG14505-RC 26..385 17..376 1740 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18303593..18303952 376..17 1740 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 06:53:51 has no hits.

BS13643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:25 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
CG14505-RB 1..360 17..376 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:54 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
CG14505-RB 17..385 5..376 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:11 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 26..384 17..375 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:26 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
CG14505-RB 17..385 5..376 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:28 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
CG14505-RC 26..384 17..375 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:28 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18303594..18303952 17..375 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:11 Download gff for BS13643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14191099..14191457 17..375 98   Minus

BS13643.pep Sequence

Translation from 16 to 375

> BS13643.pep
MALVQSDENDFHALREAQRMVDSCQDFADHLIVAEFLPHCRGVAYINIRT
LEQVIYCVQLSRAGYRIVSYEFDDVADEVANCDTVYESAHQLLAGISPLY
GEKYGFGREPLGKRKEKQS*

BS13643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14505-PB 119 CG14505-PB 1..119 1..119 623 100 Plus
CG14505-PC 119 CG14505-PC 1..119 1..119 623 100 Plus