Clone Sequence Records
BS13643.3prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-13
> BS13643.3prime
ATGGTCTAGAAAGCTTTCAGGACTGCTTCTCCTTTCGCTTCCCCAGTGGC
TCTCGTCCAAAGCCATATTTCTCGCCATACAGCGGACTTATCCCTGCCAG
CAATTGATGGGCGGACTCATAGACAGTGTCACAATTGGCCACCTCATCGG
CCACATCATCGAACTCATAGGACACGATCCGATAGCCAGCGCGACTTAGT
TGCACACAATAGATGACCTGCTCCAAGGTGCGAATATTGATGTAGGCCAC
GCCGCGACAATGGGGTAGAAATTCGGCCACGATCAAGTGGTCCGCAAAGT
CCTGGCACGAGTCCACCATCCTTTGCGCCTCTCGAAGCGCATGGAAGTCG
TTTTCATCACTCTGGACGAGAGCCATGTCGACTGATAACT
BS13643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-PB | 360 | CG14505-RB | 1..360 | 376..17 | 1700 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-RB | 956 | CG14505-RB | 26..385 | 376..17 | 1740 | 98.9 | Minus |
CG14505-RC | 1033 | CG14505-RC | 26..385 | 376..17 | 1740 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18303593..18303952 | 17..376 | 1740 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:17 has no hits.
BS13643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:36 Download gff for
BS13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-PB | 1..360 | 17..376 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:05 Download gff for
BS13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 17..385 | 17..388 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:46 Download gff for
BS13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 17..385 | 17..388 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:46 Download gff for
BS13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18303593..18303960 | 17..388 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:05 Download gff for
BS13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14191098..14191465 | 17..388 | 97 | | Plus |
BS13643.5prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-13
> BS13643.5prime
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCTGAAAGCTTTCTAGACC
BS13643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-PB | 360 | CG14505-RB | 1..360 | 17..376 | 1700 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-RB | 956 | CG14505-RB | 26..385 | 17..376 | 1740 | 98.9 | Plus |
CG14505-RC | 1033 | CG14505-RC | 26..385 | 17..376 | 1740 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18303593..18303952 | 376..17 | 1740 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:50 has no hits.
BS13643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:37 Download gff for
BS13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-PB | 1..360 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:21 Download gff for
BS13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 17..385 | 5..376 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:44 Download gff for
BS13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 17..385 | 5..376 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:44 Download gff for
BS13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18303593..18303960 | 5..376 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:21 Download gff for
BS13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14191098..14191465 | 5..376 | 97 | | Minus |
BS13643.complete Sequence
392 bp assembled on 2006-11-01
GenBank Submission: FJ637496
> BS13643.complete
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCTGAAAGCTTTCTAGACCAT
BS13643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-RB | 360 | CG14505-PB | 1..360 | 17..376 | 1740 | 98.9 | Plus |
CG14505-RC | 360 | CG14505-PC | 1..360 | 17..376 | 1740 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-RB | 956 | CG14505-RB | 26..385 | 17..376 | 1740 | 98.9 | Plus |
CG14505-RC | 1033 | CG14505-RC | 26..385 | 17..376 | 1740 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18303593..18303952 | 376..17 | 1740 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:53:51 has no hits.
BS13643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:25 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RB | 1..360 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:54 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RB | 17..385 | 5..376 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:11 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 26..384 | 17..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:26 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RB | 17..385 | 5..376 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:28 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14505-RC | 26..384 | 17..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:28 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18303594..18303952 | 17..375 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:11 Download gff for
BS13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14191099..14191457 | 17..375 | 98 | | Minus |
BS13643.pep Sequence
Translation from 16 to 375
> BS13643.pep
MALVQSDENDFHALREAQRMVDSCQDFADHLIVAEFLPHCRGVAYINIRT
LEQVIYCVQLSRAGYRIVSYEFDDVADEVANCDTVYESAHQLLAGISPLY
GEKYGFGREPLGKRKEKQS*
BS13643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14505-PB | 119 | CG14505-PB | 1..119 | 1..119 | 623 | 100 | Plus |
CG14505-PC | 119 | CG14505-PC | 1..119 | 1..119 | 623 | 100 | Plus |