Clone Sequence Records
BS13650.complete Sequence
1229 bp assembled on 2009-12-07
GenBank Submission: KX803329
> BS13650.complete
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGCAATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTGGCCAGGTGAAAATGATCATGGCCACCAATCGTCCAGATACACTGGA
TCCGGCGCTGCTGCGTCCTGGACGACTTGATCGCAAATTGGAAATTCCGC
TGCCCAACGAAGTGGCGCGTATGGACATTCTTAAGATTCACGCCGAACCA
CTGAACAAACGCGGCGAAATCGACTATGAGGCGGTGGTTAAGCTCTCCGA
TTTGTTCAATGGTGCCGATCTACGGAACATTTGCACGGAAGCCGGGCTTT
TTGCCCTCCGCTGCGATAGGGAGTTTGTCATTCAAGAAGATTTCATGAAG
GCCGTCCGCAAAATAGCGGACAATAAGAAGCTGGAGTCGCGTCTGGACTA
CAAGCCTATATAGAAGCTTTCTAGACCAT
BS13650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1197 | CG7257-PB | 1..1197 | 17..1213 | 5865 | 99.3 | Plus |
Rpt4R-RA | 1197 | CG7257-PA | 1..1197 | 17..1213 | 5865 | 99.3 | Plus |
Rpt4-RB | 1194 | CG3455-PB | 141..1187 | 160..1206 | 1680 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 193..1391 | 17..1215 | 5875 | 99.3 | Plus |
Rpt4R-RA | 1391 | CG7257-RA | 82..1280 | 17..1215 | 5875 | 99.3 | Plus |
Rpt4-RB | 1465 | CG3455-RB | 263..1309 | 160..1206 | 1680 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942104..11942724 | 17..637 | 3075 | 99.7 | Plus |
3L | 28110227 | 3L | 11942790..11943374 | 631..1215 | 2835 | 99 | Plus |
X | 23542271 | X | 6290064..6290775 | 960..249 | 1400 | 79.8 | Minus |
X | 23542271 | X | 21317254..21317378 | 867..991 | 190 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:53:31 has no hits.
BS13650.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:48 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-RA | 82..1278 | 17..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:40 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 82..1278 | 17..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:21 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-RA | 82..1278 | 17..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:18 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 82..1278 | 17..1213 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:18 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942104..11942721 | 17..634 | 99 | -> | Plus |
3L | 11942794..11943372 | 635..1213 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:40 Download gff for
BS13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935204..11935821 | 17..634 | 99 | -> | Plus |
arm_3L | 11935894..11936472 | 635..1213 | 98 | | Plus |
BS13650.5prime Sequence
618 bp (532 high quality bases) assembled on 2006-10-13
> BS13650.5prime
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGA
BS13650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7257-PA | 1197 | CG7257-RA | 1..602 | 17..618 | 2985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 193..794 | 17..618 | 2995 | 99.8 | Plus |
Rpt4R-RA | 1391 | CG7257-RA | 82..683 | 17..618 | 2995 | 99.8 | Plus |
Rpt4-RB | 1465 | CG3455-RB | 263..721 | 160..618 | 735 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942104..11942705 | 17..618 | 2995 | 99.8 | Plus |
X | 23542271 | X | 6290406..6290775 | 618..249 | 590 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:13:53 has no hits.
BS13650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:40 Download gff for
BS13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 1..601 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:11 Download gff for
BS13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 80..682 | 14..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:34 Download gff for
BS13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 80..682 | 14..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:34 Download gff for
BS13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942102..11942704 | 14..617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:11 Download gff for
BS13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935202..11935804 | 14..617 | 99 | | Plus |
BS13650.3prime Sequence
596 bp (524 high quality bases) assembled on 2006-10-13
> BS13650.3prime
ATGGTCTAGAAAGCTTCTATATAGGCTTGTAGTCCAGACGCGACTCCAGC
TTCTTATTGTCCGCTATTTTGCGGACGGCCTTCATGAAATCTTCTTGAAT
GACAAACTCCCTATCGCAGCGGAGGGCAAAAAGCCCGGCTTCCGTGCAAA
TGTTCCGTAGATCGGCACCATTGAACAAATCGGAGAGCTTAACCACCGCC
TCATAGTCGATTTCGCCGCGTTTGTTCAGTGGTTCGGCGTGAATCTTAAG
AATGTCCATACGCGCCACTTCGTTGGGCAGCGGAATTTCCAATTTGCGAT
CAAGTCGTCCAGGACGCAGCAGCGCCGGATCCAGTGTATCTGGACGATTG
GTGGCCATGATCATTTTCACCTGGCCAAGAGCATCGAATCCATCCATCTG
GTTAAGCAGTTCCATCAGCGTGCGCTGGATCTCTCGGTCGGCGGATGTTC
CCTCCGAGAAGCGGCGACCACCGATTGCGTCGATCTCGTCCATGAATATG
ATACACGGCTGGTGGTCACGGGCGTAGGCAAACATCTCCCGGATCAGTCG
GGCACTCTCGCCAATGTACTTGTCCACAATTGCAGAGGAAACGACC
BS13650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7257-PA | 1197 | CG7257-RA | 618..1197 | 596..17 | 2750 | 98.9 | Minus |
CG3455-PA | 1173 | Rpt4-RA | 667..848 | 523..342 | 285 | 86.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-RB | 1502 | CG7257-RB | 810..1391 | 596..15 | 2820 | 99 | Minus |
Rpt4R-RA | 1391 | CG7257-RA | 699..1280 | 596..15 | 2820 | 99 | Minus |
Rpt4-RB | 1465 | CG3455-RB | 737..1309 | 596..24 | 930 | 78.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11942793..11943374 | 596..15 | 2820 | 99 | Minus |
X | 23542271 | X | 6290064..6290390 | 270..596 | 765 | 82.3 | Plus |
X | 23542271 | X | 21317254..21317378 | 363..239 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:01:22 has no hits.
BS13650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:39 Download gff for
BS13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7257-PA | 618..1197 | 17..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:55 Download gff for
BS13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 699..1287 | 6..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:17 Download gff for
BS13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt4R-RA | 699..1287 | 6..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:17 Download gff for
BS13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11942793..11943381 | 6..596 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:55 Download gff for
BS13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11935893..11936481 | 6..596 | 98 | | Minus |
BS13650.pep Sequence
Translation from 16 to 1212
> BS13650.pep
MSAPLANPPTDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYE
KSEDDLKALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEK
LKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQ
IRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQM
DANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGR
RFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLR
PGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGA
DLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI*
BS13650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt4R-PB | 398 | CG7257-PB | 1..398 | 1..398 | 2032 | 100 | Plus |
Rpt4R-PA | 398 | CG7257-PA | 1..398 | 1..398 | 2032 | 100 | Plus |
Rpt4-PB | 397 | CG3455-PB | 5..397 | 6..398 | 1695 | 82.7 | Plus |
Rpt6-PA | 405 | CG1489-PA | 36..403 | 30..398 | 849 | 46.3 | Plus |
Rpt6R-PA | 399 | CG2241-PA | 31..383 | 30..383 | 822 | 46.9 | Plus |