Clone BS13650 Report

Search the DGRC for BS13650

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptRpt4R-RA
Protein status:BS13650.pep: full length peptide match
Sequenced Size:1229

Clone Sequence Records

BS13650.complete Sequence

1229 bp assembled on 2009-12-07

GenBank Submission: KX803329

> BS13650.complete
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGACGCCAACTTCTTGAAGGTCGTTTCCTCTGCAA
TTGTGGACAAGTACATTGGCGAGAGTGCCCGACTGATCCGGGAGATGTTT
GCCTACGCCCGTGACCACCAGCCGTGTATCATATTCATGGACGAGATCGA
CGCAATCGGTGGTCGCCGCTTCTCGGAGGGAACATCCGCCGACCGAGAGA
TCCAGCGCACGCTGATGGAACTGCTTAACCAGATGGATGGATTCGATGCT
CTTGGCCAGGTGAAAATGATCATGGCCACCAATCGTCCAGATACACTGGA
TCCGGCGCTGCTGCGTCCTGGACGACTTGATCGCAAATTGGAAATTCCGC
TGCCCAACGAAGTGGCGCGTATGGACATTCTTAAGATTCACGCCGAACCA
CTGAACAAACGCGGCGAAATCGACTATGAGGCGGTGGTTAAGCTCTCCGA
TTTGTTCAATGGTGCCGATCTACGGAACATTTGCACGGAAGCCGGGCTTT
TTGCCCTCCGCTGCGATAGGGAGTTTGTCATTCAAGAAGATTTCATGAAG
GCCGTCCGCAAAATAGCGGACAATAAGAAGCTGGAGTCGCGTCTGGACTA
CAAGCCTATATAGAAGCTTTCTAGACCAT

BS13650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1197 CG7257-PB 1..1197 17..1213 5865 99.3 Plus
Rpt4R-RA 1197 CG7257-PA 1..1197 17..1213 5865 99.3 Plus
Rpt4-RB 1194 CG3455-PB 141..1187 160..1206 1680 77.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 193..1391 17..1215 5875 99.3 Plus
Rpt4R-RA 1391 CG7257-RA 82..1280 17..1215 5875 99.3 Plus
Rpt4-RB 1465 CG3455-RB 263..1309 160..1206 1680 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942104..11942724 17..637 3075 99.7 Plus
3L 28110227 3L 11942790..11943374 631..1215 2835 99 Plus
X 23542271 X 6290064..6290775 960..249 1400 79.8 Minus
X 23542271 X 21317254..21317378 867..991 190 76.8 Plus
Blast to na_te.dros performed on 2014-11-28 01:53:31 has no hits.

BS13650.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:48 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7257-RA 82..1278 17..1213 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:40 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 82..1278 17..1213 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:21 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7257-RA 82..1278 17..1213 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:18 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 82..1278 17..1213 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:18 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11942104..11942721 17..634 99 -> Plus
3L 11942794..11943372 635..1213 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:40 Download gff for BS13650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935204..11935821 17..634 99 -> Plus
arm_3L 11935894..11936472 635..1213 98   Plus

BS13650.5prime Sequence

618 bp (532 high quality bases) assembled on 2006-10-13

> BS13650.5prime
GAAGTTATCAGTCGACATGTCTGCTCCACTTGCAAATCCCCCAACAGACG
ACGAGCGTGTGAGGGCGCTGACCAATTACCGTACCAAGCTCCTGGAGCAC
CGCGAGATCGAATCCAAATTGAAAGCTTTGCGAGACAAGTACAAGGTCGT
GAATGCCGAGTACGAAAAGTCCGAGGACGATCTGAAGGCTCTCCAGAGTG
TGGGTCAGATGGTCGGGGAAATCCTGAAGCAGCTCACACCGGACAACTTC
ATCGTGAAGGCCTCGAACGGACCGCGCTACGTGGTCGGATGTCGCCGGCA
GATTAACAAGGAGAAGCTAAAGCCCGGCACACGTGTCGCCCTGGATGTGA
CCACTCTCACCATCATGCGCTATTTGCCGCGGGAAGTGGATCCCCTGGTG
TACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGG
TGGACTTGGTCAGCAAATCCGCGAGCTTCGCGAGGTCATTGAACTGCCGC
TACTAAATCCAGATATTTTCCTACGCGTTGGCATAAGTCCGCCCAAGGGA
TGCCTGCTCTACGGACCGCCTGGCACCGGAAAAACTCTCCTGGCCCGCGC
CATCGCCTCCCAGATGGA

BS13650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7257-PA 1197 CG7257-RA 1..602 17..618 2985 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 193..794 17..618 2995 99.8 Plus
Rpt4R-RA 1391 CG7257-RA 82..683 17..618 2995 99.8 Plus
Rpt4-RB 1465 CG3455-RB 263..721 160..618 735 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942104..11942705 17..618 2995 99.8 Plus
X 23542271 X 6290406..6290775 618..249 590 77.3 Minus
Blast to na_te.dros performed on 2015-02-05 02:13:53 has no hits.

BS13650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:40 Download gff for BS13650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 1..601 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:11 Download gff for BS13650.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 80..682 14..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:34 Download gff for BS13650.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 80..682 14..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:34 Download gff for BS13650.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11942102..11942704 14..617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:11 Download gff for BS13650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935202..11935804 14..617 99   Plus

BS13650.3prime Sequence

596 bp (524 high quality bases) assembled on 2006-10-13

> BS13650.3prime
ATGGTCTAGAAAGCTTCTATATAGGCTTGTAGTCCAGACGCGACTCCAGC
TTCTTATTGTCCGCTATTTTGCGGACGGCCTTCATGAAATCTTCTTGAAT
GACAAACTCCCTATCGCAGCGGAGGGCAAAAAGCCCGGCTTCCGTGCAAA
TGTTCCGTAGATCGGCACCATTGAACAAATCGGAGAGCTTAACCACCGCC
TCATAGTCGATTTCGCCGCGTTTGTTCAGTGGTTCGGCGTGAATCTTAAG
AATGTCCATACGCGCCACTTCGTTGGGCAGCGGAATTTCCAATTTGCGAT
CAAGTCGTCCAGGACGCAGCAGCGCCGGATCCAGTGTATCTGGACGATTG
GTGGCCATGATCATTTTCACCTGGCCAAGAGCATCGAATCCATCCATCTG
GTTAAGCAGTTCCATCAGCGTGCGCTGGATCTCTCGGTCGGCGGATGTTC
CCTCCGAGAAGCGGCGACCACCGATTGCGTCGATCTCGTCCATGAATATG
ATACACGGCTGGTGGTCACGGGCGTAGGCAAACATCTCCCGGATCAGTCG
GGCACTCTCGCCAATGTACTTGTCCACAATTGCAGAGGAAACGACC

BS13650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7257-PA 1197 CG7257-RA 618..1197 596..17 2750 98.9 Minus
CG3455-PA 1173 Rpt4-RA 667..848 523..342 285 86.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-RB 1502 CG7257-RB 810..1391 596..15 2820 99 Minus
Rpt4R-RA 1391 CG7257-RA 699..1280 596..15 2820 99 Minus
Rpt4-RB 1465 CG3455-RB 737..1309 596..24 930 78.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11942793..11943374 596..15 2820 99 Minus
X 23542271 X 6290064..6290390 270..596 765 82.3 Plus
X 23542271 X 21317254..21317378 363..239 190 76.8 Minus
Blast to na_te.dros performed on 2015-02-11 19:01:22 has no hits.

BS13650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:39 Download gff for BS13650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7257-PA 618..1197 17..596 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:55 Download gff for BS13650.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 699..1287 6..596 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:17 Download gff for BS13650.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt4R-RA 699..1287 6..596 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:17 Download gff for BS13650.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11942793..11943381 6..596 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:55 Download gff for BS13650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11935893..11936481 6..596 98   Minus

BS13650.pep Sequence

Translation from 16 to 1212

> BS13650.pep
MSAPLANPPTDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYE
KSEDDLKALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEK
LKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQ
IRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQM
DANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGR
RFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLR
PGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGA
DLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI*

BS13650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt4R-PB 398 CG7257-PB 1..398 1..398 2032 100 Plus
Rpt4R-PA 398 CG7257-PA 1..398 1..398 2032 100 Plus
Rpt4-PB 397 CG3455-PB 5..397 6..398 1695 82.7 Plus
Rpt6-PA 405 CG1489-PA 36..403 30..398 849 46.3 Plus
Rpt6R-PA 399 CG2241-PA 31..383 30..383 822 46.9 Plus