Clone Sequence Records
BS13652.3prime Sequence
707 bp (618 high quality bases) assembled on 2006-10-13
> BS13652.3prime
ATGGTCTAGAAAGCTTTTAGTTAAGTGATTGCTCATCGTCGACTTTAAGG
AACAGCGAAAACAGAAAGGCAATTGACATCAGTGAGCAAAGCCAGAGAAA
CGGGGCCAAGCAGCTGAGTTGCATGAAAACCGGCAGTAACATATTGCCAC
TTACAGATCCAAGTCTCCCAAAGGTCATGATCAGCAGTAAAACCATCGTC
CTCATTAGGGTGGGAAATATCACCACAGACATTCCAATGATTGTAGTGGC
ACAAATGCCCATCATGGTCAGGTAAACGGCGGAAACCATCATCGTTACCA
GCGAAGTCTTCACAAAGTACAGGTCAGTATGTGATTCGAGACCACTTGGA
ATCGCATTAAGGGAAAAATGATCAGAAAACCGACCAGACCAATTCCAGCT
TAGATTCTGGAAGCCCATAACAAGCGATCTCCTACCCACTAGAGCGCACT
CCACCCTCTTCTCCTCCTCATCCATGGATTTCGCATTTGCATTGTGTTCC
AAAACGGCGCACATGCTCGTGTCATTCGCACCCAAAGTGTCCATGGCGTT
CATCGTGGCAAAGATCTGTGGCAGCCACAGACGCACGGAGTTGACACACA
TAATCTGGCAGAAATGCAGGCAATAAACCTGCAGTGAAATGGCCAAGTAA
GGACTGAAGAACATAGGCTTCAGCTGCTTGAATCCATCGATGAACTTGCT
CTGGGCC
BS13652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-PB | 1533 | CG14691-RB | 843..1533 | 707..17 | 3380 | 99.5 | Minus |
| CG14691-PA | 1569 | CG14691-RA | 1263..1569 | 323..17 | 1510 | 99.6 | Minus |
| CG14691-PA | 1569 | CG14691-RA | 843..1110 | 707..440 | 1290 | 99.2 | Minus |
| CG14691-PA | 1569 | CG14691-RA | 1149..1225 | 400..324 | 385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-RB | 1672 | CG14691-RB | 915..1605 | 707..17 | 3410 | 99.6 | Minus |
| CG14691-RC | 1675 | CG14691-RC | 915..1608 | 707..17 | 3060 | 96.4 | Minus |
| CG14691-RA | 1708 | CG14691-RA | 1335..1641 | 323..17 | 1520 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10754169..10754367 | 399..597 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 10753514..10753647 | 69..202 | 640 | 98.5 | Plus |
| 3R | 32079331 | 3R | 10753698..10753821 | 200..323 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 10754420..10754530 | 597..707 | 525 | 98.2 | Plus |
| 3R | 32079331 | 3R | 10754033..10754109 | 324..400 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 10753398..10753453 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:50:44 has no hits.
BS13652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:40 Download gff for
BS13652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-PB | 843..1533 | 17..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:04 Download gff for
BS13652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 915..1609 | 11..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:51 Download gff for
BS13652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 915..1609 | 11..707 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:51 Download gff for
BS13652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10753394..10753453 | 11..72 | 95 | <- | Plus |
| 3R | 10753518..10753645 | 73..200 | 99 | <- | Plus |
| 3R | 10753699..10753821 | 201..323 | 100 | <- | Plus |
| 3R | 10754033..10754107 | 324..398 | 100 | <- | Plus |
| 3R | 10754169..10754366 | 399..596 | 100 | <- | Plus |
| 3R | 10754420..10754530 | 597..707 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:04 Download gff for
BS13652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6579116..6579175 | 11..72 | 95 | <- | Plus |
| arm_3R | 6579240..6579367 | 73..200 | 99 | <- | Plus |
| arm_3R | 6579421..6579543 | 201..323 | 100 | <- | Plus |
| arm_3R | 6579755..6579829 | 324..398 | 100 | <- | Plus |
| arm_3R | 6579891..6580088 | 399..596 | 100 | <- | Plus |
| arm_3R | 6580142..6580252 | 597..707 | 98 | | Plus |
BS13652.complete Sequence
1565 bp assembled on 2010-06-25
GenBank Submission: KX802750
> BS13652.complete
GAAGTTATCAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGC
CTGCTGACTTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAAC
GTGTTCATCCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTC
GGCCTCGGCGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACC
TGAGCATCGTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATG
ATCATCTCGGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCG
ACCCGTCCTCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCG
CTTCGCTCAGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGAT
GGTTTAATCATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGA
GTTCCATGGCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGT
GTGTTTCCATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTA
CCGGTGCCCATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCA
GGTCTTCCTGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGC
ACATCTTCCTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTAT
AAAAAGGCTTTGGACTCCTTGCAGCGCATCTACAAGCTGAACAAGCGGAA
GAGCAGAGAGAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATC
GGTCTGATGATCTTGATGGTACTGGTCGGCCATCAACACTCCAGGAAAGA
TTTAGTCGGGCCCAGAGCAAGTTCATCGATGGATTCAAGCAGCTGAAGCC
TATGTTCTCCAGTCCCTACTTGGCCATTTCACTGCAGGTTTATTGCCTGC
ATTTCTGCCAGATTATGTGTGTCAACTCCGTGCGTCTGTGGCTGCCACAG
ATCTTTGCCACGATGAACGCCATGGACACTTTGGGTGCGAATGACACGAG
CATGTGCGCCGTTTTGGAACACAATGCAAATGCGAAATCCATGGATGAGG
AGGAGAAGAGGGTGGAGTGCGCTCTAGTGGGTAGGAGATCGCTTGTTATG
GGCTTCCAGAATCTAAGCTGGAATTGGTCTGGTCGGTTTTCTGATCATTT
TTCCCTTAATGCGATTCCAAGTGGTCTCGAATCACATACTGACCTGTACT
TTGTGAAGACTTCGCTGGTAACGATGATGGTTTCCGCCGTTTACCTGACC
ATGATGGGCATTTGTGCCACTACAATCATTGGAATGTCTGTGGTGATATT
TCCCACCCTAATGAGGACGATGGTTTTACTGCTGATCATGACCTTTGGGA
GACTTGGATCTGTAAGTGGCAATATGTTACTGCCGGTTTTCATGCAACTC
AGCTGCTTGGCCCCGTTTCTCTGGCTTTGCTCACTGATGTCAATTGCCTT
TCTGTTTTCGCTGTTCCTTAAAGTCGACGATGAGCAATCACTTAACTAAA
AGCTTTCTAGACCAT
BS13652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-RB | 1533 | CG14691-PB | 1..1533 | 17..1549 | 7650 | 99.9 | Plus |
| CG14691-RA | 1569 | CG14691-PA | 1..1225 | 17..1242 | 5675 | 97.9 | Plus |
| CG14691-RC | 1122 | CG14691-PC | 1..1114 | 17..1130 | 5570 | 100 | Plus |
| CG14691-RA | 1569 | CG14691-PA | 1263..1569 | 1243..1549 | 1520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-RB | 1672 | CG14691-RB | 73..1605 | 17..1549 | 7650 | 99.9 | Plus |
| CG14691-RC | 1675 | CG14691-RC | 73..1608 | 17..1549 | 7250 | 98.4 | Plus |
| CG14691-RA | 1708 | CG14691-RA | 73..1297 | 17..1242 | 5675 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10755171..10755562 | 408..17 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 10754420..10754620 | 969..769 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 10754169..10754367 | 1167..969 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 10754688..10754869 | 769..588 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 10754928..10755106 | 587..409 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10753514..10753647 | 1497..1364 | 640 | 98.5 | Minus |
| 3R | 32079331 | 3R | 10753698..10753821 | 1366..1243 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 10754033..10754109 | 1242..1166 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 10753398..10753453 | 1549..1494 | 280 | 100 | Minus |
| X | 23542271 | X | 951575..951674 | 273..174 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:47:04 has no hits.
BS13652.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:39 Download gff for
BS13652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 73..1603 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:28 Download gff for
BS13652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 73..1603 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:57 Download gff for
BS13652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 73..1603 | 17..1547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:57 Download gff for
BS13652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10753400..10753453 | 1494..1547 | 100 | <- | Minus |
| 3R | 10753518..10753645 | 1366..1493 | 99 | <- | Minus |
| 3R | 10753699..10753821 | 1243..1365 | 100 | <- | Minus |
| 3R | 10754033..10754107 | 1168..1242 | 100 | <- | Minus |
| 3R | 10754169..10754366 | 970..1167 | 100 | <- | Minus |
| 3R | 10754420..10754619 | 770..969 | 100 | <- | Minus |
| 3R | 10754688..10754869 | 588..769 | 100 | <- | Minus |
| 3R | 10754928..10755106 | 409..587 | 100 | <- | Minus |
| 3R | 10755171..10755562 | 17..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:28 Download gff for
BS13652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6579122..6579175 | 1494..1547 | 100 | <- | Minus |
| arm_3R | 6579240..6579367 | 1366..1493 | 99 | <- | Minus |
| arm_3R | 6579421..6579543 | 1243..1365 | 100 | <- | Minus |
| arm_3R | 6579755..6579829 | 1168..1242 | 100 | <- | Minus |
| arm_3R | 6579891..6580088 | 970..1167 | 100 | <- | Minus |
| arm_3R | 6580142..6580341 | 770..969 | 100 | <- | Minus |
| arm_3R | 6580410..6580591 | 588..769 | 100 | <- | Minus |
| arm_3R | 6580650..6580828 | 409..587 | 100 | <- | Minus |
| arm_3R | 6580893..6581284 | 17..408 | 100 | | Minus |
BS13652.pep Sequence
Translation from 16 to 1548
> BS13652.pep
MADRAKDNTDEPADFETAIAECGFGLFNVFILCSAVPCLTAMVFSASALS
YVMPSAECDLDLSIVDKGMLHAVTYAGMIISAVPWGFIADTIGRRPVLIS
GGWLDGFFVLCASLSQNTAQLMAFKFFDGLIICGPFAVVVSYLAEFHGKK
HRPYIMLFVGLCVSIGSMILPLLSYLLLPVPILFTVSSMKFRTWQVFLAV
SSAPSLLSGFLHIFLPESPKFLMSQGNYKKALDSLQRIYKLNKRKSRESY
PIKHLTDPTPDRSDDLDGTGRPSTLQERFSRAQSKFIDGFKQLKPMFSSP
YLAISLQVYCLHFCQIMCVNSVRLWLPQIFATMNAMDTLGANDTSMCAVL
EHNANAKSMDEEEKRVECALVGRRSLVMGFQNLSWNWSGRFSDHFSLNAI
PSGLESHTDLYFVKTSLVTMMVSAVYLTMMGICATTIIGMSVVIFPTLMR
TMVLLLIMTFGRLGSVSGNMLLPVFMQLSCLAPFLWLCSLMSIAFLFSLF
LKVDDEQSLN*
BS13652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-PB | 510 | CG14691-PB | 1..510 | 1..510 | 2638 | 100 | Plus |
| CG14691-PA | 522 | CG14691-PA | 1..522 | 1..510 | 2377 | 90.5 | Plus |
| CG14691-PC | 373 | CG14691-PC | 1..371 | 1..371 | 1929 | 100 | Plus |
| CG3690-PB | 558 | CG3690-PB | 30..557 | 13..509 | 957 | 40.1 | Plus |
| CG3690-PA | 558 | CG3690-PA | 30..557 | 13..509 | 957 | 40.1 | Plus |
