Clone Sequence Records
BS13653.3prime Sequence
787 bp (722 high quality bases) assembled on 2006-10-13
> BS13653.3prime
ATGGTCTAGAAAGCTTCTACCGGGACTGATAGTTGATACGATTGCGAGGA
GTGTAGTCCATGACGAATCTGTGGCGCCTCTGTTGATACTGCGACTGGCT
AAGGAAGATACTGGCCAATCCCTTGATGGTCACAAAGGTCAGTCCGCCCA
GGAGGATGCTCAATAACTTGTTCTCCTCGTAGATCCTGCCGAAGAGCTTC
TGTCCCAGCACCACGGAAATGGTGGGCAGACTTAGGGCAATGCAGAAGCT
GGTGGAGGCGCGACCAAGTTGCTCCGTTGCCAAGTTACCGCCAATTAGGC
CATCCGAGGCCGGATACTCGCGCTCCAGCTCATCGAAGTACTCATCGCTC
AGCGGAGCACCGGGCAGGGGTAGACCCACAGCATCCAGTTGCTCGGCGGG
AATGGCGCTACGTTTGCGCCGACGCAGCCAACGGATCACGCAGTCCTCCC
AGCGCACAAGCCTGCTGAGAAGTAGGAGCGTCGGCACCGATGGCAGCACA
ATCATCAGCAGCGAGGGATCCTCTTGGAGCAGCTTCATGCCCGTGCTATA
GCCGGCCAGTTGGAGCACGGTGAGTGCTCCGTAGATCACCGCGGAGAAGT
AAACGGTGGCCGCCAGGATGCCCATCAGAACACTGGGACACATACGATCG
CAGCCCTTGTCCAGTCGCTCCAGCATGGCATCGAAGCGGCATAGTGGCGG
CATCACTATAATGTACTCCGTGCGGCATTGGGTGCACGTCACGGGAGCAC
CCGGCGATAGCATCTCCTTCTCATCGATCCAGCGACT
BS13653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 972 | CG10761-RA | 202..972 | 787..17 | 3830 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 366..1136 | 787..17 | 3840 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161657..8162427 | 17..787 | 3840 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:00:41 has no hits.
BS13653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:41 Download gff for
BS13653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 202..972 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:23 Download gff for
BS13653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 366..1140 | 12..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:17 Download gff for
BS13653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 366..1140 | 12..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:17 Download gff for
BS13653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161653..8162427 | 12..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:23 Download gff for
BS13653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055686..8056460 | 12..787 | 99 | | Plus |
BS13653.5prime Sequence
788 bp (732 high quality bases) assembled on 2006-10-13
> BS13653.5prime
GAAGTTATCAGTCGACATGAGCCGACAATTTATGCATTTACCGCTTCACA
GCCGGCTGCGCCGTTTGAGAAGCGGATTGGAACCGCCATCCGGCAATGTC
GTGGATGACAGAATGTGCTGGATTTGCCTGAGGGGCGATGAGGATCACCG
CCGAAGGGATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGG
TGCACGAGGCCTGTCTGAGTCGCTGGATCGATGAGAAGGAGATGCTATCG
CCGGGTGCTCCCGTGACGTGCACCCAATGCCGCACGGAGTACATTATAGT
GATGCCGCCACTATGCCGCTTCGATGCCATGCTGGAGCGACTGGACAAGG
GCTGCGATCGTATGTGTCCCAGTGTTCTGATGGGCATCCTGGCGGCCACC
GTTTACTTCTCCGCGGTGATCTACGGAGCACTCACCGTGCTCCAACTGGC
CGGCTATAGCACGGGCATGAAGCTGCTCCAAGAGGATCCCTCGCTGCTGA
TGATTGTGCTGCCATCGGTGCCGACGCTCCTACTTCTCAGCAGGCTTGTG
CGCTGGGAGGACTGCGTGATCCGTTGGCTGCGTCGGCGCAAACGTAGCGC
CATTCCCGCCGAGCAACTGGATGCTGTGGGTCTACCCCTGCCCGGTGCTC
CGCTGAGCGATGAGTACTTCGATGAGCTGGAGCGCGAGTATCCGGCCTCG
GATGGCCTAATTGGCGGTAACTTGGCAACGGAGCAACTTGGTCGCGCCTC
CACCAGCTTCTGCATTGCCCTAAGTCTGCCCACCATTT
BS13653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 972 | CG10761-RA | 1..772 | 17..788 | 3835 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 165..936 | 17..788 | 3845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161857..8162628 | 788..17 | 3845 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:43:33 has no hits.
BS13653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:41 Download gff for
BS13653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 1..772 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:02 Download gff for
BS13653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..936 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:16 Download gff for
BS13653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..936 | 9..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:16 Download gff for
BS13653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161857..8162635 | 9..788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:02 Download gff for
BS13653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055890..8056668 | 9..788 | 99 | | Minus |
BS13653.complete Sequence
1004 bp assembled on 2006-11-01
GenBank Submission: FJ637497
> BS13653.complete
GAAGTTATCAGTCGACATGAGCCGACAATTTATGCATTTACCGCTTCACA
GCCGGCTGCGCCGTTTGAGAAGCGGATTGGAACCGCCATCCGGCAATGTC
GTGGATGACAGAATGTGCTGGATTTGCCTGAGGGGCGATGAGGATCACCG
CCGAAGGGATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGG
TGCACGAGGCCTGTCTGAGTCGCTGGATCGATGAGAAGGAGATGCTATCG
CCGGGTGCTCCCGTGACGTGCACCCAATGCCGCACGGAGTACATTATAGT
GATGCCGCCACTATGCCGCTTCGATGCCATGCTGGAGCGACTGGACAAGG
GCTGCGATCGTATGTGTCCCAGTGTTCTGATGGGCATCCTGGCGGCCACC
GTTTACTTCTCCGCGGTGATCTACGGAGCACTCACCGTGCTCCAACTGGC
CGGCTATAGCACGGGCATGAAGCTGCTCCAAGAGGATCCCTCGCTGCTGA
TGATTGTGCTGCCATCGGTGCCGACGCTCCTACTTCTCAGCAGGCTTGTG
CGCTGGGAGGACTGCGTGATCCGTTGGCTGCGTCGGCGCAAACGTAGCGC
CATTCCCGCCGAGCAACTGGATGCTGTGGGTCTACCCCTGCCCGGTGCTC
CGCTGAGCGATGAGTACTTCGATGAGCTGGAGCGCGAGTATCCGGCCTCG
GATGGCCTAATTGGCGGTAACTTGGCAACGGAGCAACTTGGTCGCGCCTC
CACCAGCTTCTGCATTGCCCTAAGTCTGCCCACCATTTCCGTGGTGCTGG
GACAGAAGCTCTTCGGCAGGATCTACGAGGAGAACAAGTTATTGAGCATC
CTCCTGGGCGGACTGACCTTTGTGACCATCAAGGGATTGGCCAGTATCTT
CCTTAGCCAGTCGCAGTATCAACAGAGGCGCCACAGATTCGTCATGGACT
ACACTCCTCGCAATCGTATCAACTATCAGTCCCGGTAGAAGCTTTCTAGA
CCAT
BS13653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 972 | CG10761-PA | 1..972 | 17..988 | 4845 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 165..1136 | 17..988 | 4845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161657..8162628 | 988..17 | 4845 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:51 has no hits.
BS13653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:26 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:55 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..1140 | 9..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:03 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 165..1136 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:27 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..1140 | 9..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:41 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 165..1136 | 17..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:41 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161657..8162628 | 17..988 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:03 Download gff for
BS13653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055690..8056661 | 17..988 | 99 | | Minus |
BS13653.pep Sequence
Translation from 16 to 987
> BS13653.pep
MSRQFMHLPLHSRLRRLRSGLEPPSGNVVDDRMCWICLRGDEDHRRRDWV
HPCRCRGTNKWVHEACLSRWIDEKEMLSPGAPVTCTQCRTEYIIVMPPLC
RFDAMLERLDKGCDRMCPSVLMGILAATVYFSAVIYGALTVLQLAGYSTG
MKLLQEDPSLLMIVLPSVPTLLLLSRLVRWEDCVIRWLRRRKRSAIPAEQ
LDAVGLPLPGAPLSDEYFDELEREYPASDGLIGGNLATEQLGRASTSFCI
ALSLPTISVVLGQKLFGRIYEENKLLSILLGGLTFVTIKGLASIFLSQSQ
YQQRRHRFVMDYTPRNRINYQSR*
BS13653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 323 | CG10761-PA | 1..323 | 1..323 | 1704 | 100 | Plus |
| CG9855-PC | 382 | CG9855-PC | 62..341 | 31..323 | 570 | 40.7 | Plus |
| CG9855-PA | 382 | CG9855-PA | 62..341 | 31..323 | 570 | 40.7 | Plus |
| CG16781-PA | 383 | CG16781-PA | 34..325 | 27..316 | 484 | 35.8 | Plus |
| CG16781-PB | 386 | CG16781-PB | 37..328 | 27..316 | 484 | 35.8 | Plus |
