Clone Sequence Records
BS13657.3prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-13
> BS13657.3prime
ATGGTCTAGAAAGCTTCTAGCACTGAGTGGATCCAATGGAGACTCCGCTC
AGATCCCTGAAGCGCCTGAATCGCTCGATTCTCCGCTGGCGAAGGTAGCG
CCTTATTTCGCAGGCCGCGTTGCAGGCCACCAGGCCCAGCATGAGGGCCG
TGATGAGCCCGGCGAAGATCAGCAGGAACCAGTGGAAGTAGCAGCTCATG
GTCACTGGCCTTTGAAGCCAGCCGCTCCAGGATGCGGTGCACTCCTCCTG
GACGCACCTTCCGCGCACATTCCTCACACATCCCTTGGCACAGCACCCGT
TCGTACTGAAGCGGCCACAGGATGTCAGTTCGATCCTGGGATCTGAGCAG
TTCACCGCCGCATACTGCCCCCAAATCCGAGGGATAATTTGGGCCAGAAG
GCAGCTTAGGGTCAACAGATTGGCCAACATGTCGACTGATAACT
BS13657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-PA | 414 | CG15549-RA | 1..414 | 430..17 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-RA | 1112 | CG15549-RA | 50..464 | 430..16 | 2075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30936044..30936458 | 16..430 | 2075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:20 has no hits.
BS13657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:43 Download gff for
BS13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-PA | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:07 Download gff for
BS13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 13..438 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:53 Download gff for
BS13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 13..438 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:53 Download gff for
BS13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30936042..30936462 | 13..438 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:07 Download gff for
BS13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26761764..26762184 | 13..438 | 98 | | Plus |
BS13657.5prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-13
> BS13657.5prime
GAAGTTATCAGTCGACATGTTGGCCAATCTGTTGACCCTAAGCTGCCTTC
TGGCCCAAATTATCCCTCGGATTTGGGGGCAGTATGCGGCGGTGAACTGC
TCAGATCCCAGGATCGAACTGACATCCTGTGGCCGCTTCAGTACGAACGG
GTGCTGTGCCAAGGGATGTGTGAGGAATGTGCGCGGAAGGTGCGTCCAGG
AGGAGTGCACCGCATCCTGGAGCGGCTGGCTTCAAAGGCCAGTGACCATG
AGCTGCTACTTCCACTGGTTCCTGCTGATCTTCGCCGGGCTCATCACGGC
CCTCATGCTGGGCCTGGTGGCCTGCAACGCGGCCTGCGAAATAAGGCGCT
ACCTTCGCCAGCGGAGAATCGAGCGATTCAGGCGCTTCAGGGATCTGAGC
GGAGTCTCCATTGGATCCACTCAGTGCTAGAAGCTTTCTAGACC
BS13657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-PA | 414 | CG15549-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-RA | 1112 | CG15549-RA | 50..464 | 17..431 | 2075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30936044..30936458 | 431..17 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:29:44 has no hits.
BS13657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:44 Download gff for
BS13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-PA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:12 Download gff for
BS13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:58 Download gff for
BS13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 9..434 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:58 Download gff for
BS13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30936042..30936462 | 9..434 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:12 Download gff for
BS13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26761764..26762184 | 9..434 | 98 | | Minus |
BS13657.complete Sequence
446 bp assembled on 2006-11-01
GenBank Submission: FJ637498
> BS13657.complete
GAAGTTATCAGTCGACATGTTGGCCAATCTGTTGACCCTAAGCTGCCTTC
TGGCCCAAATTATCCCTCGGATTTGGGGGCAGTATGCGGCGGTGAACTGC
TCAGATCCCAGGATCGAACTGACATCCTGTGGCCGCTTCAGTACGAACGG
GTGCTGTGCCAAGGGATGTGTGAGGAATGTGCGCGGAAGGTGCGTCCAGG
AGGAGTGCACCGCATCCTGGAGCGGCTGGCTTCAAAGGCCAGTGACCATG
AGCTGCTACTTCCACTGGTTCCTGCTGATCTTCGCCGGGCTCATCACGGC
CCTCATGCTGGGCCTGGTGGCCTGCAACGCGGCCTGCGAAATAAGGCGCT
ACCTTCGCCAGCGGAGAATCGAGCGATTCAGGCGCTTCAGGGATCTGAGC
GGAGTCTCCATTGGATCCACTCAGTGCTAGAAGCTTTCTAGACCAT
BS13657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-RA | 414 | CG15549-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-RA | 1112 | CG15549-RA | 50..464 | 17..431 | 2075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30936044..30936458 | 431..17 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:00 has no hits.
BS13657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:28 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:57 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:53 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 55..463 | 22..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:28 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 46..466 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:34 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15549-RA | 55..463 | 22..430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:34 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30936045..30936453 | 22..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:53 Download gff for
BS13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26761767..26762175 | 22..430 | 100 | | Minus |
BS13657.pep Sequence
Translation from 16 to 429
> BS13657.pep
MLANLLTLSCLLAQIIPRIWGQYAAVNCSDPRIELTSCGRFSTNGCCAKG
CVRNVRGRCVQEECTASWSGWLQRPVTMSCYFHWFLLIFAGLITALMLGL
VACNAACEIRRYLRQRRIERFRRFRDLSGVSIGSTQC*
BS13657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15549-PA | 137 | CG15549-PA | 1..137 | 1..137 | 742 | 100 | Plus |