Clone BS13657 Report

Search the DGRC for BS13657

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG15549-RA
Protein status:BS13657.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13657.3prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-13

> BS13657.3prime
ATGGTCTAGAAAGCTTCTAGCACTGAGTGGATCCAATGGAGACTCCGCTC
AGATCCCTGAAGCGCCTGAATCGCTCGATTCTCCGCTGGCGAAGGTAGCG
CCTTATTTCGCAGGCCGCGTTGCAGGCCACCAGGCCCAGCATGAGGGCCG
TGATGAGCCCGGCGAAGATCAGCAGGAACCAGTGGAAGTAGCAGCTCATG
GTCACTGGCCTTTGAAGCCAGCCGCTCCAGGATGCGGTGCACTCCTCCTG
GACGCACCTTCCGCGCACATTCCTCACACATCCCTTGGCACAGCACCCGT
TCGTACTGAAGCGGCCACAGGATGTCAGTTCGATCCTGGGATCTGAGCAG
TTCACCGCCGCATACTGCCCCCAAATCCGAGGGATAATTTGGGCCAGAAG
GCAGCTTAGGGTCAACAGATTGGCCAACATGTCGACTGATAACT

BS13657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-PA 414 CG15549-RA 1..414 430..17 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-RA 1112 CG15549-RA 50..464 430..16 2075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30936044..30936458 16..430 2075 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:20 has no hits.

BS13657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:43 Download gff for BS13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:07 Download gff for BS13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 13..438 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:53 Download gff for BS13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 13..438 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:53 Download gff for BS13657.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30936042..30936462 13..438 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:07 Download gff for BS13657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26761764..26762184 13..438 98   Plus

BS13657.5prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-13

> BS13657.5prime
GAAGTTATCAGTCGACATGTTGGCCAATCTGTTGACCCTAAGCTGCCTTC
TGGCCCAAATTATCCCTCGGATTTGGGGGCAGTATGCGGCGGTGAACTGC
TCAGATCCCAGGATCGAACTGACATCCTGTGGCCGCTTCAGTACGAACGG
GTGCTGTGCCAAGGGATGTGTGAGGAATGTGCGCGGAAGGTGCGTCCAGG
AGGAGTGCACCGCATCCTGGAGCGGCTGGCTTCAAAGGCCAGTGACCATG
AGCTGCTACTTCCACTGGTTCCTGCTGATCTTCGCCGGGCTCATCACGGC
CCTCATGCTGGGCCTGGTGGCCTGCAACGCGGCCTGCGAAATAAGGCGCT
ACCTTCGCCAGCGGAGAATCGAGCGATTCAGGCGCTTCAGGGATCTGAGC
GGAGTCTCCATTGGATCCACTCAGTGCTAGAAGCTTTCTAGACC

BS13657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-PA 414 CG15549-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-RA 1112 CG15549-RA 50..464 17..431 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30936044..30936458 431..17 2075 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:29:44 has no hits.

BS13657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:44 Download gff for BS13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:12 Download gff for BS13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 9..434 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:58 Download gff for BS13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 9..434 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:58 Download gff for BS13657.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30936042..30936462 9..434 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:12 Download gff for BS13657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26761764..26762184 9..434 98   Minus

BS13657.complete Sequence

446 bp assembled on 2006-11-01

GenBank Submission: FJ637498

> BS13657.complete
GAAGTTATCAGTCGACATGTTGGCCAATCTGTTGACCCTAAGCTGCCTTC
TGGCCCAAATTATCCCTCGGATTTGGGGGCAGTATGCGGCGGTGAACTGC
TCAGATCCCAGGATCGAACTGACATCCTGTGGCCGCTTCAGTACGAACGG
GTGCTGTGCCAAGGGATGTGTGAGGAATGTGCGCGGAAGGTGCGTCCAGG
AGGAGTGCACCGCATCCTGGAGCGGCTGGCTTCAAAGGCCAGTGACCATG
AGCTGCTACTTCCACTGGTTCCTGCTGATCTTCGCCGGGCTCATCACGGC
CCTCATGCTGGGCCTGGTGGCCTGCAACGCGGCCTGCGAAATAAGGCGCT
ACCTTCGCCAGCGGAGAATCGAGCGATTCAGGCGCTTCAGGGATCTGAGC
GGAGTCTCCATTGGATCCACTCAGTGCTAGAAGCTTTCTAGACCAT

BS13657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-RA 414 CG15549-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-RA 1112 CG15549-RA 50..464 17..431 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30936044..30936458 431..17 2075 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:00 has no hits.

BS13657.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:28 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:57 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 9..434 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:53 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 55..463 22..430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:28 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 46..466 9..434 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:34 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 55..463 22..430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:34 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30936045..30936453 22..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:53 Download gff for BS13657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26761767..26762175 22..430 100   Minus

BS13657.pep Sequence

Translation from 16 to 429

> BS13657.pep
MLANLLTLSCLLAQIIPRIWGQYAAVNCSDPRIELTSCGRFSTNGCCAKG
CVRNVRGRCVQEECTASWSGWLQRPVTMSCYFHWFLLIFAGLITALMLGL
VACNAACEIRRYLRQRRIERFRRFRDLSGVSIGSTQC*

BS13657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-PA 137 CG15549-PA 1..137 1..137 742 100 Plus