Clone BS13658 Report

Search the DGRC for BS13658

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG12493-RA
Protein status:BS13658.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13658.3prime Sequence

666 bp (614 high quality bases) assembled on 2006-10-13

> BS13658.3prime
ATGGTCTAGAAAGCTTTTATGCTTGTGGATAGTCGGTTCCAAAGAGTTTG
TTACAAACTAATGCGGCTACTTTGCGGCGTGCATCTTTTTTGGTTGGCCC
ATCAGCCTTAAACTCGCAGTTGTCCACGGAGACGCCCATTGAGAAAACTT
TACGGTTTTCACCAGAGCTACCTAAAAATTTGAAGGTGGTCTGGGGGCGC
ATTTGCATCAGAACCATGCAAGGGTGCATATTCTTCCATAATTTGGGCAA
CTGTCCAACTGACGACGACGTCTTCTTGTTCTTTACGTCATTATACAGGG
CTGCAACATCAATAGCGTCGCTGTTCCATTTCTCAGCAAGTTTGTAAACG
GCATAAGAGGTCATCTTTTCGAGTATATTATCTTCATCGCCTCCCGAGCT
GTTTTCTGGCTCGGCCAACAGAGCTTTCATTTTGGTGGTTAGGATTTCTC
GCAGAGCCTTCTCGCAAGCTGCATTCCCTGCAGAGTTTTCTGAAGAACCC
TCCGCATCGTATTTCTTTGAGTTAACAACAATGTTAGCCACATTCTTCCC
CTCGTGGTCTTGTTTTATTTGCATGTTGTCGATTATCACGCCCTTTAACT
CTTTCAAAACCATAAGGGCATCCTTGGAGGTCACGGCCTTGGGCAACGGG
CGAACAAGACGATCCT

BS13658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-PA 891 CG12493-RA 242..891 666..17 3250 100 Minus
CG10630-PA 975 CG10630-RA 452..568 531..415 385 93.1 Minus
CG10630-PA 975 CG10630-RA 329..434 654..549 330 92.4 Minus
CG10630-PA 975 CG10630-RA 931..969 61..23 170 97.4 Minus
CG10630-PA 975 CG10630-RA 593..659 390..324 160 89.5 Minus
CG10630-PA 975 CG10630-RA 750..779 239..210 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-RB 1164 CG12493-RB 358..1007 666..17 3250 100 Minus
CG12493-RA 1173 CG12493-RA 367..1016 666..17 3250 100 Minus
blanks-RA 1268 CG10630-RA 439..1086 654..16 1665 84.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4752550..4753199 17..666 3250 100 Plus
3L 28110227 3L 5497705..5498352 16..654 1560 83.8 Plus
Blast to na_te.dros performed on 2015-02-10 20:54:17 has no hits.

BS13658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:44 Download gff for BS13658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-PA 242..891 17..666 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:29 Download gff for BS13658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 367..1018 13..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:10 Download gff for BS13658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 367..1018 13..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:10 Download gff for BS13658.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4752548..4753199 13..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:29 Download gff for BS13658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4752548..4753199 13..666 99   Plus

BS13658.5prime Sequence

746 bp (644 high quality bases) assembled on 2006-10-13

> BS13658.5prime
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCCAGACCACCTTCAAA

BS13658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-PA 891 CG12493-RA 1..715 17..731 3575 100 Plus
CG10630-PA 975 CG10630-RA 452..568 393..509 385 93.1 Plus
CG10630-PA 975 CG10630-RA 329..434 270..375 330 92.4 Plus
CG10630-PA 975 CG10630-RA 593..659 534..600 160 89.5 Plus
CG10630-PA 975 CG10630-RA 750..779 685..714 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-RA 1173 CG12493-RA 126..854 17..746 3625 99.9 Plus
CG12493-RB 1164 CG12493-RB 126..845 17..746 3480 98.6 Plus
blanks-RA 1268 CG10630-RA 439..906 270..731 1340 86.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4752712..4753372 746..85 3260 99.8 Minus
3L 28110227 3L 5497965..5498352 657..270 1265 88.4 Minus
3L 28110227 3L 4753544..4753613 86..17 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:01:16 has no hits.

BS13658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:45 Download gff for BS13658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:30 Download gff for BS13658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 116..851 7..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:25 Download gff for BS13658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 116..851 7..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:25 Download gff for BS13658.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4752715..4753370 87..743 99 <- Minus
3L 4753544..4753623 7..86 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:30 Download gff for BS13658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4752715..4753370 87..743 99 <- Minus
arm_3L 4753544..4753623 7..86 95   Minus

BS13658.complete Sequence

923 bp assembled on 2006-11-01

GenBank Submission: FJ637499

> BS13658.complete
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCAGACCACCTTCAAATTTTT
AGGTAGCTCTGGTGAAAACCGTAAAGTTTTCTCAATGGGCGTCTCCGTGG
ACAACTGCGAGTTTAAGGCTGATGGGCCAACCAAAAAAGATGCACGCCGC
AAAGTAGCCGCATTAGTTTGTAACAAACTCTTTGGAACCGACTATCCACA
AGCATAAAAGCTTTCTAGACCAT

BS13658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-RA 891 CG12493-PA 1..891 17..907 4455 100 Plus
CG12493-RB 882 CG12493-PB 1..882 17..907 4285 99 Plus
blanks-RA 975 CG10630-PA 329..969 270..901 1555 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-RA 1173 CG12493-RA 126..1016 17..907 4455 100 Plus
CG12493-RB 1164 CG12493-RB 126..1007 17..907 4285 99 Plus
blanks-RA 1268 CG10630-RA 439..1086 270..908 1560 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4752550..4753372 907..85 4115 100 Minus
3L 28110227 3L 5497705..5498352 908..270 1560 83.8 Minus
3L 28110227 3L 4753544..4753613 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:50:11 has no hits.

BS13658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:29 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:59 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 96..998 7..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:31 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 126..1014 17..905 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:30 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 96..998 7..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:39 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
CG12493-RA 126..1014 17..905 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:39 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4752552..4753370 87..905 100 <- Minus
3L 4753544..4753613 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:31 Download gff for BS13658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4752552..4753370 87..905 100 <- Minus
arm_3L 4753544..4753613 17..86 100   Minus

BS13658.pep Sequence

Translation from 16 to 906

> BS13658.pep
MAIDDMKDLLIVNVSDQEDAGMSDDLKETAMDCNMPDGESSLVITDGDSM
SKIPDDAAMATSDPKKKKKKVKKLKRSQKAKDRLVRPLPKAVTSKDALMV
LKELKGVIIDNMQIKQDHEGKNVANIVVNSKKYDAEGSSENSAGNAACEK
ALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAID
VAALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSSGE
NRKVFSMGVSVDNCEFKADGPTKKDARRKVAALVCNKLFGTDYPQA*

BS13658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12493-PA 296 CG12493-PA 1..296 1..296 1509 100 Plus
CG12493-PB 293 CG12493-PB 1..293 1..296 1480 99 Plus
blanks-PA 324 CG10630-PA 18..323 5..295 795 56.4 Plus
DIP1-PI 378 CG17686-PI 49..372 11..293 362 32.1 Plus
DIP1-PG 378 CG17686-PG 49..372 11..293 362 32.1 Plus