Clone Sequence Records
BS13658.3prime Sequence
666 bp (614 high quality bases) assembled on 2006-10-13
> BS13658.3prime
ATGGTCTAGAAAGCTTTTATGCTTGTGGATAGTCGGTTCCAAAGAGTTTG
TTACAAACTAATGCGGCTACTTTGCGGCGTGCATCTTTTTTGGTTGGCCC
ATCAGCCTTAAACTCGCAGTTGTCCACGGAGACGCCCATTGAGAAAACTT
TACGGTTTTCACCAGAGCTACCTAAAAATTTGAAGGTGGTCTGGGGGCGC
ATTTGCATCAGAACCATGCAAGGGTGCATATTCTTCCATAATTTGGGCAA
CTGTCCAACTGACGACGACGTCTTCTTGTTCTTTACGTCATTATACAGGG
CTGCAACATCAATAGCGTCGCTGTTCCATTTCTCAGCAAGTTTGTAAACG
GCATAAGAGGTCATCTTTTCGAGTATATTATCTTCATCGCCTCCCGAGCT
GTTTTCTGGCTCGGCCAACAGAGCTTTCATTTTGGTGGTTAGGATTTCTC
GCAGAGCCTTCTCGCAAGCTGCATTCCCTGCAGAGTTTTCTGAAGAACCC
TCCGCATCGTATTTCTTTGAGTTAACAACAATGTTAGCCACATTCTTCCC
CTCGTGGTCTTGTTTTATTTGCATGTTGTCGATTATCACGCCCTTTAACT
CTTTCAAAACCATAAGGGCATCCTTGGAGGTCACGGCCTTGGGCAACGGG
CGAACAAGACGATCCT
BS13658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 891 | CG12493-RA | 242..891 | 666..17 | 3250 | 100 | Minus |
CG10630-PA | 975 | CG10630-RA | 452..568 | 531..415 | 385 | 93.1 | Minus |
CG10630-PA | 975 | CG10630-RA | 329..434 | 654..549 | 330 | 92.4 | Minus |
CG10630-PA | 975 | CG10630-RA | 931..969 | 61..23 | 170 | 97.4 | Minus |
CG10630-PA | 975 | CG10630-RA | 593..659 | 390..324 | 160 | 89.5 | Minus |
CG10630-PA | 975 | CG10630-RA | 750..779 | 239..210 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RB | 1164 | CG12493-RB | 358..1007 | 666..17 | 3250 | 100 | Minus |
CG12493-RA | 1173 | CG12493-RA | 367..1016 | 666..17 | 3250 | 100 | Minus |
blanks-RA | 1268 | CG10630-RA | 439..1086 | 654..16 | 1665 | 84.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752550..4753199 | 17..666 | 3250 | 100 | Plus |
3L | 28110227 | 3L | 5497705..5498352 | 16..654 | 1560 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:17 has no hits.
BS13658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:44 Download gff for
BS13658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 242..891 | 17..666 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:29 Download gff for
BS13658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 367..1018 | 13..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:10 Download gff for
BS13658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 367..1018 | 13..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:10 Download gff for
BS13658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752548..4753199 | 13..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:29 Download gff for
BS13658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752548..4753199 | 13..666 | 99 | | Plus |
BS13658.5prime Sequence
746 bp (644 high quality bases) assembled on 2006-10-13
> BS13658.5prime
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCCAGACCACCTTCAAA
BS13658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 891 | CG12493-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
CG10630-PA | 975 | CG10630-RA | 452..568 | 393..509 | 385 | 93.1 | Plus |
CG10630-PA | 975 | CG10630-RA | 329..434 | 270..375 | 330 | 92.4 | Plus |
CG10630-PA | 975 | CG10630-RA | 593..659 | 534..600 | 160 | 89.5 | Plus |
CG10630-PA | 975 | CG10630-RA | 750..779 | 685..714 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 1173 | CG12493-RA | 126..854 | 17..746 | 3625 | 99.9 | Plus |
CG12493-RB | 1164 | CG12493-RB | 126..845 | 17..746 | 3480 | 98.6 | Plus |
blanks-RA | 1268 | CG10630-RA | 439..906 | 270..731 | 1340 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752712..4753372 | 746..85 | 3260 | 99.8 | Minus |
3L | 28110227 | 3L | 5497965..5498352 | 657..270 | 1265 | 88.4 | Minus |
3L | 28110227 | 3L | 4753544..4753613 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:01:16 has no hits.
BS13658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:45 Download gff for
BS13658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:30 Download gff for
BS13658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 116..851 | 7..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:25 Download gff for
BS13658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 116..851 | 7..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:25 Download gff for
BS13658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752715..4753370 | 87..743 | 99 | <- | Minus |
3L | 4753544..4753623 | 7..86 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:30 Download gff for
BS13658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752715..4753370 | 87..743 | 99 | <- | Minus |
arm_3L | 4753544..4753623 | 7..86 | 95 | | Minus |
BS13658.complete Sequence
923 bp assembled on 2006-11-01
GenBank Submission: FJ637499
> BS13658.complete
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCAGACCACCTTCAAATTTTT
AGGTAGCTCTGGTGAAAACCGTAAAGTTTTCTCAATGGGCGTCTCCGTGG
ACAACTGCGAGTTTAAGGCTGATGGGCCAACCAAAAAAGATGCACGCCGC
AAAGTAGCCGCATTAGTTTGTAACAAACTCTTTGGAACCGACTATCCACA
AGCATAAAAGCTTTCTAGACCAT
BS13658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 891 | CG12493-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG12493-RB | 882 | CG12493-PB | 1..882 | 17..907 | 4285 | 99 | Plus |
blanks-RA | 975 | CG10630-PA | 329..969 | 270..901 | 1555 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 1173 | CG12493-RA | 126..1016 | 17..907 | 4455 | 100 | Plus |
CG12493-RB | 1164 | CG12493-RB | 126..1007 | 17..907 | 4285 | 99 | Plus |
blanks-RA | 1268 | CG10630-RA | 439..1086 | 270..908 | 1560 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752550..4753372 | 907..85 | 4115 | 100 | Minus |
3L | 28110227 | 3L | 5497705..5498352 | 908..270 | 1560 | 83.8 | Minus |
3L | 28110227 | 3L | 4753544..4753613 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:50:11 has no hits.
BS13658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:29 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:59 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 96..998 | 7..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:31 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 126..1014 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:30 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 96..998 | 7..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:39 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 126..1014 | 17..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:39 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752552..4753370 | 87..905 | 100 | <- | Minus |
3L | 4753544..4753613 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:31 Download gff for
BS13658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752552..4753370 | 87..905 | 100 | <- | Minus |
arm_3L | 4753544..4753613 | 17..86 | 100 | | Minus |
BS13658.pep Sequence
Translation from 16 to 906
> BS13658.pep
MAIDDMKDLLIVNVSDQEDAGMSDDLKETAMDCNMPDGESSLVITDGDSM
SKIPDDAAMATSDPKKKKKKVKKLKRSQKAKDRLVRPLPKAVTSKDALMV
LKELKGVIIDNMQIKQDHEGKNVANIVVNSKKYDAEGSSENSAGNAACEK
ALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAID
VAALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSSGE
NRKVFSMGVSVDNCEFKADGPTKKDARRKVAALVCNKLFGTDYPQA*
BS13658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 296 | CG12493-PA | 1..296 | 1..296 | 1509 | 100 | Plus |
CG12493-PB | 293 | CG12493-PB | 1..293 | 1..296 | 1480 | 99 | Plus |
blanks-PA | 324 | CG10630-PA | 18..323 | 5..295 | 795 | 56.4 | Plus |
DIP1-PI | 378 | CG17686-PI | 49..372 | 11..293 | 362 | 32.1 | Plus |
DIP1-PG | 378 | CG17686-PG | 49..372 | 11..293 | 362 | 32.1 | Plus |