Clone Sequence Records
BS13661.3prime Sequence
672 bp (581 high quality bases) assembled on 2006-10-13
> BS13661.3prime
ATGGTCTAGAAAGCTTCTAGATGTATCGCTTGGCTTCCTCCTCGGAGTCG
CTGTGATTTTGCTTCCTCGGCGGTGTCTTTTTGTTCGCCTTGTATTTGCC
GCGACTTTGTTTGCCTTTAAGGCCTGCCTTCGATGGGCTTGCTTCCGAGC
GCATGGGCAGTTCCTGGGAGTCCTCATCGTGTGGCAGCCAGTCGCTGGTG
TCCATCGGTGCGCCAGCACTTTCCTCTTTGGACGGCTCTTCGTTGGCCAC
AGGCGTCTCACTGCTCTCGTTATTATCCAACTGCATTTTCTCGCTTGGCG
GAGGTTGCTGCTCCTGTTTCTGTCTGCCCATCAGTTTGTTGTAGCTCAAC
TTGTGCTCCGTATTTAAAATCAGTGCCACCAGCCCATCGACCGATTGATC
GCCCTGCGATCGACACTCTTCGTCCAGCGCCAAAGCTTTGCGTACGAAAT
TCAACAGAGACTTGCAACGAACCGCCGCATTGCGGGCACACTGCATGATG
ATACGGGCATTTGTGGGTGCAGTGCCTCCGGCAGTCAGGCTGCACAGCTC
CTGGAAGGAGTTAAAGCTCAGGACAATTACCGAATCGGCGGCGTTCTCCT
CCAGCAGCGTAGGATCCAGTATTGGTTGCACACTGCTCTTGTAAACACAG
TAAGTTACACTGACGGGATAGT
BS13661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9606-PA | 1239 | Rrp45-RA | 584..1239 | 672..17 | 3230 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp45-RB | 1647 | CG9606-RB | 720..1375 | 672..17 | 3250 | 99.7 | Minus |
Rrp45-RA | 1599 | CG9606-RA | 720..1375 | 672..17 | 3250 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16789773..16790387 | 58..672 | 3045 | 99.7 | Plus |
X | 23542271 | X | 16789677..16789717 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:30 has no hits.
BS13661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:45 Download gff for
BS13661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9606-PA | 584..1239 | 17..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:34 Download gff for
BS13661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 687..1347 | 11..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:18 Download gff for
BS13661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 720..1380 | 11..672 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:18 Download gff for
BS13661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16789672..16789717 | 11..57 | 93 | <- | Plus |
X | 16789773..16790387 | 58..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:34 Download gff for
BS13661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16683705..16683750 | 11..57 | 93 | <- | Plus |
arm_X | 16683806..16684420 | 58..672 | 99 | | Plus |
BS13661.5prime Sequence
743 bp (695 high quality bases) assembled on 2006-10-13
> BS13661.5prime
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCGCATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCG
BS13661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9606-PA | 1239 | Rrp45-RA | 1..727 | 17..743 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp45-RB | 1647 | CG9606-RB | 137..863 | 17..743 | 3635 | 100 | Plus |
Rrp45-RA | 1599 | CG9606-RA | 137..863 | 17..743 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16790674..16791130 | 473..17 | 2285 | 100 | Minus |
X | 23542271 | X | 16790244..16790514 | 743..473 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:09:07 has no hits.
BS13661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:46 Download gff for
BS13661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9606-PA | 1..727 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:58 Download gff for
BS13661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 100..830 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:31 Download gff for
BS13661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 133..863 | 9..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:31 Download gff for
BS13661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16790244..16790513 | 474..743 | 100 | <- | Minus |
X | 16790674..16791134 | 9..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:58 Download gff for
BS13661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16684277..16684546 | 474..743 | 100 | <- | Minus |
arm_X | 16684707..16685167 | 9..473 | 99 | | Minus |
BS13661.complete Sequence
1271 bp assembled on 2006-11-01
GenBank Submission: FJ637500
> BS13661.complete
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCGCATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCGGAGGCAC
TGCACCCACAAATGCCCGTATCATCATGCAGTGTGCCCGCAATGCGGCGG
TTCGTTGCAAGTCTCTGTTGAATTTCGTACGCAAAGCTTTGGCGCTGGAC
GAAGAGTGTCGATCGCAGGGCGATCAATCGGTCGATGGGCTGGTGGCACT
GATTTTAAATACGGAGCACAAGTTGAGCTACAACAAACTGATGGGCAGAC
AGAAACAGGAGCAGCAACCTCCGCCAAGCGAGAAAATGCAGTTGGATAAT
AACGAGAGCAGTGAGACGCCTGTGGCCAACGAAGAGCCGTCCAAAGAGGA
AAGTGCTGGCGCACCGATGGACACCAGCGACTGGCTGCCACACGATGAGG
ACTCCCAGGAACTGCCCATGCGCTCGGAAGCAAGCCCATCGAAGGCAGGC
CTTAAAGGCAAACAAAGTCGCGGCAAATACAAGGCGAACAAAAAGACACC
GCCGAGGAAGCAAAATCACAGCGACTCCGAGGAGGAAGCCAAGCGATACA
TCTAGAAGCTTTCTAGACCAT
BS13661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp45-RB | 1239 | CG9606-PB | 1..1239 | 17..1255 | 6180 | 99.9 | Plus |
Rrp45-RA | 1239 | CG9606-PA | 1..1239 | 17..1255 | 6180 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp45-RB | 1647 | CG9606-RB | 137..1375 | 17..1255 | 6180 | 99.9 | Plus |
Rrp45-RA | 1599 | CG9606-RA | 137..1375 | 17..1255 | 6180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16789773..16790514 | 1214..473 | 3695 | 99.9 | Minus |
X | 23542271 | X | 16790674..16791130 | 473..17 | 2285 | 100 | Minus |
X | 23542271 | X | 16789677..16789717 | 1255..1215 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:23:08 has no hits.
BS13661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:30 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 1..1239 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:00 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 18..1265 | 9..1261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:07 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 109..1342 | 22..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:31 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 18..1265 | 9..1261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:19 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp45-RA | 142..1375 | 22..1255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:19 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16789677..16789717 | 1215..1255 | 100 | <- | Minus |
X | 16789773..16790513 | 474..1214 | 99 | <- | Minus |
X | 16790674..16791125 | 22..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:07 Download gff for
BS13661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16683710..16683750 | 1215..1255 | 100 | <- | Minus |
arm_X | 16683806..16684546 | 474..1214 | 99 | <- | Minus |
arm_X | 16684707..16685158 | 22..473 | 100 | | Minus |
BS13661.pep Sequence
Translation from 16 to 1254
> BS13661.pep
MFHNSNFFEPGKSKPERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWG
SVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTT
HDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGN
LYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSV
TYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNA
RIIMQCARNAAVRCKSLLNFVRKALALDEECRSQGDQSVDGLVALILNTE
HKLSYNKLMGRQKQEQQPPPSEKMQLDNNESSETPVANEEPSKEESAGAP
MDTSDWLPHDEDSQELPMRSEASPSKAGLKGKQSRGKYKANKKTPPRKQN
HSDSEEEAKRYI*
BS13661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp45-PB | 412 | CG9606-PB | 1..412 | 1..412 | 2146 | 100 | Plus |
Rrp45-PA | 412 | CG9606-PA | 1..412 | 1..412 | 2146 | 100 | Plus |