Clone BS13661 Report

Search the DGRC for BS13661

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptRrp45-RA
Protein status:BS13661.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13661.3prime Sequence

672 bp (581 high quality bases) assembled on 2006-10-13

> BS13661.3prime
ATGGTCTAGAAAGCTTCTAGATGTATCGCTTGGCTTCCTCCTCGGAGTCG
CTGTGATTTTGCTTCCTCGGCGGTGTCTTTTTGTTCGCCTTGTATTTGCC
GCGACTTTGTTTGCCTTTAAGGCCTGCCTTCGATGGGCTTGCTTCCGAGC
GCATGGGCAGTTCCTGGGAGTCCTCATCGTGTGGCAGCCAGTCGCTGGTG
TCCATCGGTGCGCCAGCACTTTCCTCTTTGGACGGCTCTTCGTTGGCCAC
AGGCGTCTCACTGCTCTCGTTATTATCCAACTGCATTTTCTCGCTTGGCG
GAGGTTGCTGCTCCTGTTTCTGTCTGCCCATCAGTTTGTTGTAGCTCAAC
TTGTGCTCCGTATTTAAAATCAGTGCCACCAGCCCATCGACCGATTGATC
GCCCTGCGATCGACACTCTTCGTCCAGCGCCAAAGCTTTGCGTACGAAAT
TCAACAGAGACTTGCAACGAACCGCCGCATTGCGGGCACACTGCATGATG
ATACGGGCATTTGTGGGTGCAGTGCCTCCGGCAGTCAGGCTGCACAGCTC
CTGGAAGGAGTTAAAGCTCAGGACAATTACCGAATCGGCGGCGTTCTCCT
CCAGCAGCGTAGGATCCAGTATTGGTTGCACACTGCTCTTGTAAACACAG
TAAGTTACACTGACGGGATAGT

BS13661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9606-PA 1239 Rrp45-RA 584..1239 672..17 3230 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-RB 1647 CG9606-RB 720..1375 672..17 3250 99.7 Minus
Rrp45-RA 1599 CG9606-RA 720..1375 672..17 3250 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16789773..16790387 58..672 3045 99.7 Plus
X 23542271 X 16789677..16789717 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:54:30 has no hits.

BS13661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:45 Download gff for BS13661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9606-PA 584..1239 17..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:34 Download gff for BS13661.3prime
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 687..1347 11..672 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:18 Download gff for BS13661.3prime
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 720..1380 11..672 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:18 Download gff for BS13661.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16789672..16789717 11..57 93 <- Plus
X 16789773..16790387 58..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:34 Download gff for BS13661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16683705..16683750 11..57 93 <- Plus
arm_X 16683806..16684420 58..672 99   Plus

BS13661.5prime Sequence

743 bp (695 high quality bases) assembled on 2006-10-13

> BS13661.5prime
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCGCATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCG

BS13661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9606-PA 1239 Rrp45-RA 1..727 17..743 3635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-RB 1647 CG9606-RB 137..863 17..743 3635 100 Plus
Rrp45-RA 1599 CG9606-RA 137..863 17..743 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16790674..16791130 473..17 2285 100 Minus
X 23542271 X 16790244..16790514 743..473 1355 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:09:07 has no hits.

BS13661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:46 Download gff for BS13661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9606-PA 1..727 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:58 Download gff for BS13661.5prime
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 100..830 9..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:31 Download gff for BS13661.5prime
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 133..863 9..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:31 Download gff for BS13661.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16790244..16790513 474..743 100 <- Minus
X 16790674..16791134 9..473 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:58 Download gff for BS13661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16684277..16684546 474..743 100 <- Minus
arm_X 16684707..16685167 9..473 99   Minus

BS13661.complete Sequence

1271 bp assembled on 2006-11-01

GenBank Submission: FJ637500

> BS13661.complete
GAAGTTATCAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCA
AATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAA
CGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTT
CGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTAC
TGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAAC
GAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGA
CGAGGCGCATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGC
TCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGC
GTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCT
CAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTG
CATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTG
CGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCA
CTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAA
TACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTC
CTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCGGAGGCAC
TGCACCCACAAATGCCCGTATCATCATGCAGTGTGCCCGCAATGCGGCGG
TTCGTTGCAAGTCTCTGTTGAATTTCGTACGCAAAGCTTTGGCGCTGGAC
GAAGAGTGTCGATCGCAGGGCGATCAATCGGTCGATGGGCTGGTGGCACT
GATTTTAAATACGGAGCACAAGTTGAGCTACAACAAACTGATGGGCAGAC
AGAAACAGGAGCAGCAACCTCCGCCAAGCGAGAAAATGCAGTTGGATAAT
AACGAGAGCAGTGAGACGCCTGTGGCCAACGAAGAGCCGTCCAAAGAGGA
AAGTGCTGGCGCACCGATGGACACCAGCGACTGGCTGCCACACGATGAGG
ACTCCCAGGAACTGCCCATGCGCTCGGAAGCAAGCCCATCGAAGGCAGGC
CTTAAAGGCAAACAAAGTCGCGGCAAATACAAGGCGAACAAAAAGACACC
GCCGAGGAAGCAAAATCACAGCGACTCCGAGGAGGAAGCCAAGCGATACA
TCTAGAAGCTTTCTAGACCAT

BS13661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-RB 1239 CG9606-PB 1..1239 17..1255 6180 99.9 Plus
Rrp45-RA 1239 CG9606-PA 1..1239 17..1255 6180 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-RB 1647 CG9606-RB 137..1375 17..1255 6180 99.9 Plus
Rrp45-RA 1599 CG9606-RA 137..1375 17..1255 6180 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16789773..16790514 1214..473 3695 99.9 Minus
X 23542271 X 16790674..16791130 473..17 2285 100 Minus
X 23542271 X 16789677..16789717 1255..1215 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:23:08 has no hits.

BS13661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:30 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 17..1255 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:00 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 18..1265 9..1261 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:07 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 109..1342 22..1255 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:31 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 18..1265 9..1261 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:19 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 142..1375 22..1255 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:19 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
X 16789677..16789717 1215..1255 100 <- Minus
X 16789773..16790513 474..1214 99 <- Minus
X 16790674..16791125 22..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:07 Download gff for BS13661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16683710..16683750 1215..1255 100 <- Minus
arm_X 16683806..16684546 474..1214 99 <- Minus
arm_X 16684707..16685158 22..473 100   Minus

BS13661.pep Sequence

Translation from 16 to 1254

> BS13661.pep
MFHNSNFFEPGKSKPERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWG
SVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTT
HDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGN
LYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSV
TYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNA
RIIMQCARNAAVRCKSLLNFVRKALALDEECRSQGDQSVDGLVALILNTE
HKLSYNKLMGRQKQEQQPPPSEKMQLDNNESSETPVANEEPSKEESAGAP
MDTSDWLPHDEDSQELPMRSEASPSKAGLKGKQSRGKYKANKKTPPRKQN
HSDSEEEAKRYI*

BS13661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-PB 412 CG9606-PB 1..412 1..412 2146 100 Plus
Rrp45-PA 412 CG9606-PA 1..412 1..412 2146 100 Plus