Clone Sequence Records
BS13667.complete Sequence
1772 bp assembled on 2009-12-07
GenBank Submission: KX801590
> BS13667.complete
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATCCAAACCTTCTCTTGAATCAGTGTAAGAACT
CCACTGAGTACTTACAAACGCTTTCTACAAAGAAATATGACGAGATCAAA
AGCTTTCTGAAAATTCTGGAAGCCCGTAGCCCCATGTACAATATCCGATA
CCAAAAGTTCACAAACAAGAAGTTGATGGATAAGTTTCGCCAGGAATATC
TTTTTCGAGTTCAGTACCAAACAAGACGAAACATGATTTCCGCACTGCGT
AGTATTCGGTACCTTCGAAAAACCAAGAGTCTAACAAAACTCACCAGTTA
CGTGGAGGAAGTTATGGGAGATTACGTGGTGAAAAAAACCAACAGGATTA
TGCCCTGGAAATTCGAATTCATCAACGAGGTGTACAATATTTTGGCGCTT
GCCTACGTAGATCAGTACACGCTTCCGAAGAACTTTCGCTTTTCGGAGAA
GAACGCACTGCTTCGATTGCTTCGCTTTCCTATGGACAAGTCAAAGGAAG
TGAAACACTTCGTATTTGGGGATCGAACTACGCACCAAGGCTCGGAAACA
GTAGATCCGGCCTTGACAAAATCACGTCTAATGGGAAACCGACTCGAGAA
CCGTATGAATTTCGCAAAGTACCCTATAGAGAAGTCCTACCTACTTCACC
AAATGGCAGAGATTCATCTTAAATCACACAGGTTTGACGAATGCTGTTTT
AGTGCCCGAAAGTCTATTGAAGAGGCAAAAAAATGCAATAGCTACATTTG
GCAGTTTCTGTGCTACCTACTGATAATAAAGGCGAATGCTGCACTCCACA
AAGTCGAGCGAACCAGTGAAGCTCTAGATCTGGCACTAAAAATTTCCAAG
GAATTGAAAGAAAAGCATATTCATAACTTCTTGACTGCCTGTATACACTG
TAATGAGGAGGAATTCATCGTGAAGAAGCAGAGCATTTTTGCGAATAGCC
GGCGCGAAAGCGAAAAATCGGTGTATAGTTCCCTGTCCGTGCGCCATAGC
AATTAGAAGCTTTCTAGACCAT
BS13667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1740 | CG7634-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 95..1835 | 17..1757 | 8705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21565520..21565809 | 17..306 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21566894..21567183 | 1037..1326 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21567442..21567728 | 1471..1757 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 21566087..21566268 | 469..650 | 910 | 100 | Plus |
3L | 28110227 | 3L | 21566656..21566838 | 854..1036 | 900 | 99.5 | Plus |
3L | 28110227 | 3L | 21565867..21566032 | 306..471 | 830 | 100 | Plus |
3L | 28110227 | 3L | 21567233..21567379 | 1326..1472 | 735 | 100 | Plus |
3L | 28110227 | 3L | 21566326..21566441 | 650..765 | 580 | 100 | Plus |
3L | 28110227 | 3L | 21566506..21566599 | 766..859 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:02 has no hits.
BS13667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:25 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1834 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:41 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1834 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:37 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1834 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:09 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..1834 | 17..1756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:09 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21567444..21567727 | 1473..1756 | 100 | | Plus |
3L | 21566894..21567183 | 1037..1326 | 100 | -> | Plus |
3L | 21567234..21567379 | 1327..1472 | 100 | -> | Plus |
3L | 21565520..21565808 | 17..305 | 100 | -> | Plus |
3L | 21565867..21566030 | 306..469 | 100 | -> | Plus |
3L | 21566088..21566267 | 470..649 | 100 | -> | Plus |
3L | 21566326..21566441 | 650..765 | 100 | -> | Plus |
3L | 21566506..21566599 | 766..859 | 100 | -> | Plus |
3L | 21566662..21566838 | 860..1036 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:41 Download gff for
BS13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21560544..21560827 | 1473..1756 | 100 | | Plus |
arm_3L | 21559994..21560283 | 1037..1326 | 100 | -> | Plus |
arm_3L | 21560334..21560479 | 1327..1472 | 100 | -> | Plus |
arm_3L | 21558620..21558908 | 17..305 | 100 | -> | Plus |
arm_3L | 21558967..21559130 | 306..469 | 100 | -> | Plus |
arm_3L | 21559188..21559367 | 470..649 | 100 | -> | Plus |
arm_3L | 21559426..21559541 | 650..765 | 100 | -> | Plus |
arm_3L | 21559606..21559699 | 766..859 | 100 | -> | Plus |
arm_3L | 21559762..21559938 | 860..1036 | 100 | -> | Plus |
BS13667.3prime Sequence
753 bp (733 high quality bases) assembled on 2006-10-13
> BS13667.3prime
ATGGTCTAGAAAGCTTCTAATTGCTATGGCGCACGGACAGGGAACTATAC
ACCGATTTTTCGCTTTCGCGCCGGCTATTCGCAAAAATGCTCTGCTTCTT
CACGATGAATTCCTCCTCATTACAGTGTATACAGGCAGTCAAGAAGTTAT
GAATATGCTTTTCTTTCAATTCCTTGGAAATTTTTAGTGCCAGATCTAGA
GCTTCACTGGTTCGCTCGACTTTGTGGAGTGCAGCATTCGCCTTTATTAT
CAGTAGGTAGCACAGAAACTGCCAAATGTAGCTATTGCATTTTTTTGCCT
CTTCAATAGACTTTCGGGCACTAAAACAGCATTCGTCAAACCTGTGTGAT
TTAAGATGAATCTCTGCCATTTGGTGAAGTAGGTAGGACTTCTCTATAGG
GTACTTTGCGAAATTCATACGGTTCTCGAGTCGGTTTCCCATTAGACGTG
ATTTTGTCAAGGCCGGATCTACTGTTTCCGAGCCTTGGTGCGTAGTTCGA
TCCCCAAATACGAAGTGTTTCACTTCCTTTGACTTGTCCATAGGAAAGCG
AAGCAATCGAAGCAGTGCGTTCTTCTCCGAAAAGCGAAAGTTCTTCGGAA
GCGTGTACTGATCTACGTAGGCAAGCGCCAAAATATTGTACACCTCGTTG
ATGAATTCGAATTTCCAGGGCATAATCCTGTTGGTTTTTTTCACCACGTA
ATCTCCCATAACTTCCTCCACGTAACTGGTGAGTTTTGTTAGACTCTTGG
TTT
BS13667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 1740 | CG7634-RA | 1004..1740 | 753..17 | 3685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 1098..1840 | 753..10 | 3695 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21566894..21567183 | 736..447 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 21567442..21567728 | 302..16 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 21567233..21567379 | 447..301 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:39 has no hits.
BS13667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:47 Download gff for
BS13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 1004..1740 | 17..753 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:08 Download gff for
BS13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 1098..1843 | 7..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:25 Download gff for
BS13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 1098..1843 | 7..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:25 Download gff for
BS13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21567234..21567379 | 301..446 | 100 | -> | Minus |
3L | 21566894..21567183 | 447..736 | 100 | -> | Minus |
3L | 21566822..21566838 | 737..753 | 100 | -> | Minus |
3L | 21567444..21567736 | 7..300 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:08 Download gff for
BS13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21559922..21559938 | 737..753 | 100 | -> | Minus |
arm_3L | 21559994..21560283 | 447..736 | 100 | -> | Minus |
arm_3L | 21560334..21560479 | 301..446 | 100 | -> | Minus |
arm_3L | 21560544..21560836 | 7..300 | 99 | | Minus |
BS13667.5prime Sequence
770 bp (650 high quality bases) assembled on 2006-10-13
> BS13667.5prime
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATC
BS13667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 1740 | CG7634-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-RA | 1892 | CG7634-RA | 95..848 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21565520..21565809 | 17..306 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 21566087..21566268 | 469..650 | 910 | 100 | Plus |
3L | 28110227 | 3L | 21565867..21566032 | 306..471 | 830 | 100 | Plus |
3L | 28110227 | 3L | 21566326..21566441 | 650..765 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:17:40 has no hits.
BS13667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:48 Download gff for
BS13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:07 Download gff for
BS13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..848 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:50 Download gff for
BS13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7634-RA | 95..848 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:50 Download gff for
BS13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21565520..21565808 | 17..305 | 100 | -> | Plus |
3L | 21565867..21566030 | 306..469 | 100 | -> | Plus |
3L | 21566088..21566267 | 470..649 | 100 | -> | Plus |
3L | 21566326..21566448 | 650..770 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:07 Download gff for
BS13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21558620..21558908 | 17..305 | 100 | -> | Plus |
arm_3L | 21558967..21559130 | 306..469 | 100 | -> | Plus |
arm_3L | 21559188..21559367 | 470..649 | 100 | -> | Plus |
arm_3L | 21559426..21559548 | 650..770 | 97 | | Plus |
BS13667.pep Sequence
Translation from 16 to 1755
> BS13667.pep
MTSIIPPGSLVPQAQGVEAAVPVWFKMDWSPEIEQGIYKDWGTYYSRRRR
ENLGMYYFDKALKLGPADFTTLYRRSQSKRKNAQADGALKDSLEAKRLLK
NLQRYDAPINLEVCDALYELNQLENAKAELHDNTRLFTGNKTKMFEQRLV
VVDENIEDACGPSMTQYISDKEKLIVHLKEVQNKYKPDTRPLWKILKEQE
KCDVLSIPEIEEEMLSPLEIARRSRAFDVFNQMFIDRSWHDVIFLKHVRK
NPNLLLNQCKNSTEYLQTLSTKKYDEIKSFLKILEARSPMYNIRYQKFTN
KKLMDKFRQEYLFRVQYQTRRNMISALRSIRYLRKTKSLTKLTSYVEEVM
GDYVVKKTNRIMPWKFEFINEVYNILALAYVDQYTLPKNFRFSEKNALLR
LLRFPMDKSKEVKHFVFGDRTTHQGSETVDPALTKSRLMGNRLENRMNFA
KYPIEKSYLLHQMAEIHLKSHRFDECCFSARKSIEEAKKCNSYIWQFLCY
LLIIKANAALHKVERTSEALDLALKISKELKEKHIHNFLTACIHCNEEEF
IVKKQSIFANSRRESEKSVYSSLSVRHSN*
BS13667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7634-PA | 579 | CG7634-PA | 1..579 | 1..579 | 3014 | 100 | Plus |
CG15128-PA | 580 | CG15128-PA | 1..564 | 1..569 | 1462 | 51 | Plus |
r-cup-PA | 594 | CG10998-PA | 20..560 | 24..563 | 1025 | 40.1 | Plus |
wa-cup-PB | 580 | CG10113-PB | 17..548 | 16..554 | 1024 | 41.7 | Plus |
p-cup-PA | 538 | CG12993-PA | 14..531 | 77..578 | 659 | 30.9 | Plus |