Clone BS13667 Report

Search the DGRC for BS13667

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG7634-RA
Protein status:BS13667.pep: full length peptide match
Sequenced Size:1772

Clone Sequence Records

BS13667.complete Sequence

1772 bp assembled on 2009-12-07

GenBank Submission: KX801590

> BS13667.complete
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATCCAAACCTTCTCTTGAATCAGTGTAAGAACT
CCACTGAGTACTTACAAACGCTTTCTACAAAGAAATATGACGAGATCAAA
AGCTTTCTGAAAATTCTGGAAGCCCGTAGCCCCATGTACAATATCCGATA
CCAAAAGTTCACAAACAAGAAGTTGATGGATAAGTTTCGCCAGGAATATC
TTTTTCGAGTTCAGTACCAAACAAGACGAAACATGATTTCCGCACTGCGT
AGTATTCGGTACCTTCGAAAAACCAAGAGTCTAACAAAACTCACCAGTTA
CGTGGAGGAAGTTATGGGAGATTACGTGGTGAAAAAAACCAACAGGATTA
TGCCCTGGAAATTCGAATTCATCAACGAGGTGTACAATATTTTGGCGCTT
GCCTACGTAGATCAGTACACGCTTCCGAAGAACTTTCGCTTTTCGGAGAA
GAACGCACTGCTTCGATTGCTTCGCTTTCCTATGGACAAGTCAAAGGAAG
TGAAACACTTCGTATTTGGGGATCGAACTACGCACCAAGGCTCGGAAACA
GTAGATCCGGCCTTGACAAAATCACGTCTAATGGGAAACCGACTCGAGAA
CCGTATGAATTTCGCAAAGTACCCTATAGAGAAGTCCTACCTACTTCACC
AAATGGCAGAGATTCATCTTAAATCACACAGGTTTGACGAATGCTGTTTT
AGTGCCCGAAAGTCTATTGAAGAGGCAAAAAAATGCAATAGCTACATTTG
GCAGTTTCTGTGCTACCTACTGATAATAAAGGCGAATGCTGCACTCCACA
AAGTCGAGCGAACCAGTGAAGCTCTAGATCTGGCACTAAAAATTTCCAAG
GAATTGAAAGAAAAGCATATTCATAACTTCTTGACTGCCTGTATACACTG
TAATGAGGAGGAATTCATCGTGAAGAAGCAGAGCATTTTTGCGAATAGCC
GGCGCGAAAGCGAAAAATCGGTGTATAGTTCCCTGTCCGTGCGCCATAGC
AATTAGAAGCTTTCTAGACCAT

BS13667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-RA 1740 CG7634-PA 1..1740 17..1756 8700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-RA 1892 CG7634-RA 95..1835 17..1757 8705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21565520..21565809 17..306 1450 100 Plus
3L 28110227 3L 21566894..21567183 1037..1326 1450 100 Plus
3L 28110227 3L 21567442..21567728 1471..1757 1435 100 Plus
3L 28110227 3L 21566087..21566268 469..650 910 100 Plus
3L 28110227 3L 21566656..21566838 854..1036 900 99.5 Plus
3L 28110227 3L 21565867..21566032 306..471 830 100 Plus
3L 28110227 3L 21567233..21567379 1326..1472 735 100 Plus
3L 28110227 3L 21566326..21566441 650..765 580 100 Plus
3L 28110227 3L 21566506..21566599 766..859 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:02 has no hits.

BS13667.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:25 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..1834 17..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:41 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..1834 17..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:37 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..1834 17..1756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:09 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..1834 17..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:09 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21567444..21567727 1473..1756 100   Plus
3L 21566894..21567183 1037..1326 100 -> Plus
3L 21567234..21567379 1327..1472 100 -> Plus
3L 21565520..21565808 17..305 100 -> Plus
3L 21565867..21566030 306..469 100 -> Plus
3L 21566088..21566267 470..649 100 -> Plus
3L 21566326..21566441 650..765 100 -> Plus
3L 21566506..21566599 766..859 100 -> Plus
3L 21566662..21566838 860..1036 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:41 Download gff for BS13667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21560544..21560827 1473..1756 100   Plus
arm_3L 21559994..21560283 1037..1326 100 -> Plus
arm_3L 21560334..21560479 1327..1472 100 -> Plus
arm_3L 21558620..21558908 17..305 100 -> Plus
arm_3L 21558967..21559130 306..469 100 -> Plus
arm_3L 21559188..21559367 470..649 100 -> Plus
arm_3L 21559426..21559541 650..765 100 -> Plus
arm_3L 21559606..21559699 766..859 100 -> Plus
arm_3L 21559762..21559938 860..1036 100 -> Plus

BS13667.3prime Sequence

753 bp (733 high quality bases) assembled on 2006-10-13

> BS13667.3prime
ATGGTCTAGAAAGCTTCTAATTGCTATGGCGCACGGACAGGGAACTATAC
ACCGATTTTTCGCTTTCGCGCCGGCTATTCGCAAAAATGCTCTGCTTCTT
CACGATGAATTCCTCCTCATTACAGTGTATACAGGCAGTCAAGAAGTTAT
GAATATGCTTTTCTTTCAATTCCTTGGAAATTTTTAGTGCCAGATCTAGA
GCTTCACTGGTTCGCTCGACTTTGTGGAGTGCAGCATTCGCCTTTATTAT
CAGTAGGTAGCACAGAAACTGCCAAATGTAGCTATTGCATTTTTTTGCCT
CTTCAATAGACTTTCGGGCACTAAAACAGCATTCGTCAAACCTGTGTGAT
TTAAGATGAATCTCTGCCATTTGGTGAAGTAGGTAGGACTTCTCTATAGG
GTACTTTGCGAAATTCATACGGTTCTCGAGTCGGTTTCCCATTAGACGTG
ATTTTGTCAAGGCCGGATCTACTGTTTCCGAGCCTTGGTGCGTAGTTCGA
TCCCCAAATACGAAGTGTTTCACTTCCTTTGACTTGTCCATAGGAAAGCG
AAGCAATCGAAGCAGTGCGTTCTTCTCCGAAAAGCGAAAGTTCTTCGGAA
GCGTGTACTGATCTACGTAGGCAAGCGCCAAAATATTGTACACCTCGTTG
ATGAATTCGAATTTCCAGGGCATAATCCTGTTGGTTTTTTTCACCACGTA
ATCTCCCATAACTTCCTCCACGTAACTGGTGAGTTTTGTTAGACTCTTGG
TTT

BS13667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-PA 1740 CG7634-RA 1004..1740 753..17 3685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-RA 1892 CG7634-RA 1098..1840 753..10 3695 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21566894..21567183 736..447 1450 100 Minus
3L 28110227 3L 21567442..21567728 302..16 1435 100 Minus
3L 28110227 3L 21567233..21567379 447..301 735 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:39 has no hits.

BS13667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:47 Download gff for BS13667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-PA 1004..1740 17..753 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:08 Download gff for BS13667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 1098..1843 7..753 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:25 Download gff for BS13667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 1098..1843 7..753 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:25 Download gff for BS13667.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21567234..21567379 301..446 100 -> Minus
3L 21566894..21567183 447..736 100 -> Minus
3L 21566822..21566838 737..753 100 -> Minus
3L 21567444..21567736 7..300 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:08 Download gff for BS13667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21559922..21559938 737..753 100 -> Minus
arm_3L 21559994..21560283 447..736 100 -> Minus
arm_3L 21560334..21560479 301..446 100 -> Minus
arm_3L 21560544..21560836 7..300 99   Minus

BS13667.5prime Sequence

770 bp (650 high quality bases) assembled on 2006-10-13

> BS13667.5prime
GAAGTTATCAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTC
CGCAGGCGCAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGAC
TGGAGCCCGGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTA
CAGTCGCCGGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCC
TTAAGCTTGGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGC
AAAAGGAAGAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGC
AAAACGACTATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGG
AGGTCTGCGATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCC
GAGCTCCACGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTT
CGAGCAGCGACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCC
CTTCGATGACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTG
AAGGAGGTACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAAT
TCTGAAGGAACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAG
AAGAAATGCTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGAC
GTGTTTAACCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCT
CAAGCACGTTCGAAAAAATC

BS13667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-PA 1740 CG7634-RA 1..754 17..770 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-RA 1892 CG7634-RA 95..848 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21565520..21565809 17..306 1450 100 Plus
3L 28110227 3L 21566087..21566268 469..650 910 100 Plus
3L 28110227 3L 21565867..21566032 306..471 830 100 Plus
3L 28110227 3L 21566326..21566441 650..765 580 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:17:40 has no hits.

BS13667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:48 Download gff for BS13667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:07 Download gff for BS13667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..848 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:50 Download gff for BS13667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7634-RA 95..848 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:50 Download gff for BS13667.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21565520..21565808 17..305 100 -> Plus
3L 21565867..21566030 306..469 100 -> Plus
3L 21566088..21566267 470..649 100 -> Plus
3L 21566326..21566448 650..770 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:07 Download gff for BS13667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21558620..21558908 17..305 100 -> Plus
arm_3L 21558967..21559130 306..469 100 -> Plus
arm_3L 21559188..21559367 470..649 100 -> Plus
arm_3L 21559426..21559548 650..770 97   Plus

BS13667.pep Sequence

Translation from 16 to 1755

> BS13667.pep
MTSIIPPGSLVPQAQGVEAAVPVWFKMDWSPEIEQGIYKDWGTYYSRRRR
ENLGMYYFDKALKLGPADFTTLYRRSQSKRKNAQADGALKDSLEAKRLLK
NLQRYDAPINLEVCDALYELNQLENAKAELHDNTRLFTGNKTKMFEQRLV
VVDENIEDACGPSMTQYISDKEKLIVHLKEVQNKYKPDTRPLWKILKEQE
KCDVLSIPEIEEEMLSPLEIARRSRAFDVFNQMFIDRSWHDVIFLKHVRK
NPNLLLNQCKNSTEYLQTLSTKKYDEIKSFLKILEARSPMYNIRYQKFTN
KKLMDKFRQEYLFRVQYQTRRNMISALRSIRYLRKTKSLTKLTSYVEEVM
GDYVVKKTNRIMPWKFEFINEVYNILALAYVDQYTLPKNFRFSEKNALLR
LLRFPMDKSKEVKHFVFGDRTTHQGSETVDPALTKSRLMGNRLENRMNFA
KYPIEKSYLLHQMAEIHLKSHRFDECCFSARKSIEEAKKCNSYIWQFLCY
LLIIKANAALHKVERTSEALDLALKISKELKEKHIHNFLTACIHCNEEEF
IVKKQSIFANSRRESEKSVYSSLSVRHSN*

BS13667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7634-PA 579 CG7634-PA 1..579 1..579 3014 100 Plus
CG15128-PA 580 CG15128-PA 1..564 1..569 1462 51 Plus
r-cup-PA 594 CG10998-PA 20..560 24..563 1025 40.1 Plus
wa-cup-PB 580 CG10113-PB 17..548 16..554 1024 41.7 Plus
p-cup-PA 538 CG12993-PA 14..531 77..578 659 30.9 Plus