Clone Sequence Records
BS13670.3prime Sequence
577 bp (443 high quality bases) assembled on 2006-10-13
> BS13670.3prime
ATGGTCTAGAAAGCTTCTATTGCGGCGCGGCAGCAACAGGCGCCGCTCGA
TTCGCTGGCTCCTCATCCTGTCCATCAGCCGCAATCTCTTCCGGTAGCAG
GGGCTGACCCTCTCCGCCCCAAGGAAATCCGCCAGGTCGATCCTCAGCAG
CCGCCTGGAAGTTGCGTTCGATGTGCTCATTGAAGAGACGTTTCAAAAAG
TAGGGGGTTTTGATCAGTCTGTAGCCGTTGGACAGTGTAGGATAGACGTC
CTCCAGCACGTAGTAGATGTGGCCAACACCCATGCCGATGACATCCACCC
ACACGGTGTTTCCCAGAATCATGGAGCAGCAGAGGAGCACCCACGGAAGG
TACGGCGCCTGGAAGTTAAGCACCCCGAAGAAATTCATTGGCACCAGTGG
ATTGCGTCGTGACCACACATAGACCAGCATTAATGTGAAGGCCTGGCCCA
GGAACAACAGGTTGACGAAGATTCCGAAGAAGGTCATTAGCACGCCGCCA
AAGATGAACATCATGACAAAGTCGGAGCTGCGTCCGCGGAAAGATCCGTC
CTCCAACATTCGACAATATCGATATGT
BS13670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14899-PA | 786 | CG14899-RA | 226..786 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 495..1055 | 577..17 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483262..16483645 | 194..577 | 1920 | 100 | Plus |
3R | 32079331 | 3R | 16483029..16483206 | 17..194 | 890 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3859..3919 | 259..319 | 107 | 63.9 | Plus |
BS13670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:49 Download gff for
BS13670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 226..786 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:31 Download gff for
BS13670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 495..1055 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:03 Download gff for
BS13670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 495..1055 | 17..577 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:03 Download gff for
BS13670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483029..16483206 | 17..194 | 100 | <- | Plus |
3R | 16483263..16483645 | 195..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:31 Download gff for
BS13670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12308751..12308928 | 17..194 | 100 | <- | Plus |
arm_3R | 12308985..12309367 | 195..577 | 100 | | Plus |
BS13670.5prime Sequence
588 bp (535 high quality bases) assembled on 2006-10-13
> BS13670.5prime
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTC
BS13670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14899-PA | 786 | CG14899-RA | 1..572 | 17..588 | 2860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 269..841 | 16..588 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483299..16483784 | 588..103 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 16483868..16483955 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3859..3919 | 560..500 | 107 | 63.9 | Minus |
BS13670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:50 Download gff for
BS13670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-PA | 1..572 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:56 Download gff for
BS13670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..841 | 10..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:01 Download gff for
BS13670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 263..841 | 10..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:01 Download gff for
BS13670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483299..16483783 | 104..588 | 100 | <- | Minus |
3R | 16483868..16483961 | 10..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:56 Download gff for
BS13670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12309021..12309505 | 104..588 | 100 | <- | Minus |
arm_3R | 12309590..12309683 | 10..103 | 97 | | Minus |
BS13670.complete Sequence
818 bp assembled on 2006-11-01
GenBank Submission: FJ637501
> BS13670.complete
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCGCAAT
AGAAGCTTTCTAGACCAT
BS13670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 786 | CG14899-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-RA | 1390 | CG14899-RA | 269..1055 | 16..802 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16483262..16483784 | 625..103 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 16483029..16483206 | 802..625 | 890 | 100 | Minus |
3R | 32079331 | 3R | 16483868..16483955 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:27:37 has no hits.
BS13670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:32 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:02 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 443..1235 | 10..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:35 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 270..1055 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:32 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14899-RA | 443..1235 | 10..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:49 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-2-RA | 270..1055 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:49 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16483029..16483206 | 625..802 | 100 | <- | Minus |
3R | 16483263..16483783 | 104..624 | 100 | <- | Minus |
3R | 16483868..16483954 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:35 Download gff for
BS13670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12308751..12308928 | 625..802 | 100 | <- | Minus |
arm_3R | 12308985..12309505 | 104..624 | 100 | <- | Minus |
arm_3R | 12309590..12309676 | 17..103 | 100 | | Minus |
BS13670.pep Sequence
Translation from 16 to 801
> BS13670.pep
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQ*
BS13670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-2-PA | 261 | CG14899-PA | 1..261 | 1..261 | 1391 | 100 | Plus |
Der-1-PB | 245 | CG10908-PB | 6..233 | 7..248 | 268 | 29.4 | Plus |
Der-1-PA | 245 | CG10908-PA | 6..233 | 7..248 | 268 | 29.4 | Plus |