Clone BS13670 Report

Search the DGRC for BS13670

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptDer-2-RA
Protein status:BS13670.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13670.3prime Sequence

577 bp (443 high quality bases) assembled on 2006-10-13

> BS13670.3prime
ATGGTCTAGAAAGCTTCTATTGCGGCGCGGCAGCAACAGGCGCCGCTCGA
TTCGCTGGCTCCTCATCCTGTCCATCAGCCGCAATCTCTTCCGGTAGCAG
GGGCTGACCCTCTCCGCCCCAAGGAAATCCGCCAGGTCGATCCTCAGCAG
CCGCCTGGAAGTTGCGTTCGATGTGCTCATTGAAGAGACGTTTCAAAAAG
TAGGGGGTTTTGATCAGTCTGTAGCCGTTGGACAGTGTAGGATAGACGTC
CTCCAGCACGTAGTAGATGTGGCCAACACCCATGCCGATGACATCCACCC
ACACGGTGTTTCCCAGAATCATGGAGCAGCAGAGGAGCACCCACGGAAGG
TACGGCGCCTGGAAGTTAAGCACCCCGAAGAAATTCATTGGCACCAGTGG
ATTGCGTCGTGACCACACATAGACCAGCATTAATGTGAAGGCCTGGCCCA
GGAACAACAGGTTGACGAAGATTCCGAAGAAGGTCATTAGCACGCCGCCA
AAGATGAACATCATGACAAAGTCGGAGCTGCGTCCGCGGAAAGATCCGTC
CTCCAACATTCGACAATATCGATATGT

BS13670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14899-PA 786 CG14899-RA 226..786 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 495..1055 577..17 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483645 194..577 1920 100 Plus
3R 32079331 3R 16483029..16483206 17..194 890 100 Plus
Blast to na_te.dros performed 2015-02-10 17:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 3859..3919 259..319 107 63.9 Plus

BS13670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:49 Download gff for BS13670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 226..786 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:31 Download gff for BS13670.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 495..1055 17..577 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:03 Download gff for BS13670.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 495..1055 17..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:03 Download gff for BS13670.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16483029..16483206 17..194 100 <- Plus
3R 16483263..16483645 195..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:31 Download gff for BS13670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12308751..12308928 17..194 100 <- Plus
arm_3R 12308985..12309367 195..577 100   Plus

BS13670.5prime Sequence

588 bp (535 high quality bases) assembled on 2006-10-13

> BS13670.5prime
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTC

BS13670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14899-PA 786 CG14899-RA 1..572 17..588 2860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 269..841 16..588 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483299..16483784 588..103 2430 100 Minus
3R 32079331 3R 16483868..16483955 103..16 440 100 Minus
Blast to na_te.dros performed 2015-02-10 16:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 3859..3919 560..500 107 63.9 Minus

BS13670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:50 Download gff for BS13670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14899-PA 1..572 17..588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:56 Download gff for BS13670.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..841 10..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:01 Download gff for BS13670.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 263..841 10..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:01 Download gff for BS13670.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16483299..16483783 104..588 100 <- Minus
3R 16483868..16483961 10..103 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:56 Download gff for BS13670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12309021..12309505 104..588 100 <- Minus
arm_3R 12309590..12309683 10..103 97   Minus

BS13670.complete Sequence

818 bp assembled on 2006-11-01

GenBank Submission: FJ637501

> BS13670.complete
GAAGTTATCAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCC
CGGTGGTCACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCG
GTGCACCTGGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCT
GATTGTGCGCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACT
TTGGCACAATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGA
TATTGTCGAATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTT
TGTCATGATGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCT
TCGTCAACCTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTAT
GTGTGGTCACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCT
TAACTTCCAGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGA
TTCTGGGAAACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCAC
ATCTACTACGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAG
ACTGATCAAAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCG
AACGCAACTTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGG
GGCGGAGAGGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACA
GGATGAGGAGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCGCAAT
AGAAGCTTTCTAGACCAT

BS13670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 786 CG14899-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-RA 1390 CG14899-RA 269..1055 16..802 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483784 625..103 2615 100 Minus
3R 32079331 3R 16483029..16483206 802..625 890 100 Minus
3R 32079331 3R 16483868..16483955 103..16 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:27:37 has no hits.

BS13670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:32 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:02 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 443..1235 10..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:35 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 270..1055 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:32 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 443..1235 10..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:49 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 270..1055 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:49 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16483029..16483206 625..802 100 <- Minus
3R 16483263..16483783 104..624 100 <- Minus
3R 16483868..16483954 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:35 Download gff for BS13670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12308751..12308928 625..802 100 <- Minus
arm_3R 12308985..12309505 104..624 100 <- Minus
arm_3R 12309590..12309676 17..103 100   Minus

BS13670.pep Sequence

Translation from 16 to 801

> BS13670.pep
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQ*

BS13670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-PA 261 CG14899-PA 1..261 1..261 1391 100 Plus
Der-1-PB 245 CG10908-PB 6..233 7..248 268 29.4 Plus
Der-1-PA 245 CG10908-PA 6..233 7..248 268 29.4 Plus