Clone Sequence Records
BS13676.5prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-13
> BS13676.5prime
GAAGTTATCAGTCGACATGAGCCAAGAAAATTTTCCGCTTCCAAGTGTAG
AAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCT
GAAAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCA
GCGCTGCAGTAGTTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGC
CAGAATGCAAAGCATCGAGATCAGTGAAAAAAAGGAAAAGGGCAAGGATC
CATAAACGGAAAAGCACTCTCTACGGAGATCGCGCTGTGAACTGTACCAA
GTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTTTTTCTCAT
GTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGA
AAAGTACTTGGTGGTGCTTACCGCAAGCAACCTATGAAGCGTTCGAAATT
ACCGTGCTAAAAGCTTTCTAGACC
BS13676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 444 | CG30039-RA | 1..440 | 17..456 | 2175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 129..574 | 17..462 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051130..12051555 | 462..37 | 2100 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:30 has no hits.
BS13676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:52 Download gff for
BS13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:13 Download gff for
BS13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..577 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:23 Download gff for
BS13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..577 | 17..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:23 Download gff for
BS13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051127..12051554 | 38..466 | 99 | <- | Minus |
| 2R | 12051607..12051627 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:13 Download gff for
BS13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938632..7939059 | 38..466 | 99 | <- | Minus |
| arm_2R | 7939112..7939132 | 17..37 | 100 | | Minus |
BS13676.3prime Sequence
570 bp (569 high quality bases) assembled on 2006-10-13
> BS13676.3prime
ATGGTCTAGAAAGCTTTTAGCACGGTAATTTCGAACGCTTCATAGGTTGC
TTGCGGTAAGCACCACCAAGTACTTTTCTGGACGAGATCCGTTTCACCTT
GAACAATCGACCATCTATCTCGGCACATGAGAAAAACTTGGTGCGGGCCG
GAAAATAGATCGTGACAGTTCCGCACTTGGTACAGTTCACAGCGCGATCT
CCGTAGAGAGTGCTTTTCCGTTTATGGATCCTTGCCCTTTTCCTTTTTTT
CACTGATCTCGATGCTTTGCATTCTGGCTGCTTATATTTATGTTCCCGAT
TTAAAATCCTCGAACTACTGCAGCGCTTCTTCGCCTCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN
BS13676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 444 | CG30039-RA | 134..440 | 327..21 | 1510 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 262..574 | 327..15 | 1535 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051130..12051442 | 15..327 | 1535 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:37:18 has no hits.
BS13676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:52 Download gff for
BS13676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-PA | 134..444 | 17..327 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:41 Download gff for
BS13676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 262..577 | 11..327 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:01 Download gff for
BS13676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 262..577 | 11..327 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:01 Download gff for
BS13676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051127..12051442 | 11..327 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:41 Download gff for
BS13676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938632..7938947 | 11..327 | 98 | | Plus |
BS13676.complete Sequence
476 bp assembled on 2006-11-01
GenBank Submission: FJ637502
> BS13676.complete
GAAGTTATCAGTCGACATGAGCCAAGAAAATTTTCCGCTTCCAAGTGTAG
AAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCT
GAAAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCA
GCGCTGCAGTAGTTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGC
CAGAATGCAAAGCATCGAGATCAGTGAAAAAAAGGAAAAGGGCAAGGATC
CATAAACGGAAAAGCACTCTCTACGGAGATCGCGCTGTGAACTGTACCAA
GTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTTTTTCTCAT
GTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGA
AAAGTACTTGGTGGTGCTTACCGCAAGCAACCTATGAAGCGTTCGAAATT
ACCGTGCTAAAAGCTTTCTAGACCAT
BS13676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 444 | CG30039-PA | 1..444 | 17..460 | 2190 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-RA | 727 | CG30039-RA | 129..574 | 17..462 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12051130..12051555 | 462..37 | 2100 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:03:16 has no hits.
BS13676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:33 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:44 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..577 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:26 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..569 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:33 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..577 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:44 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30039-RA | 129..569 | 17..458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:44 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12051134..12051554 | 38..458 | 99 | <- | Minus |
| 2R | 12051607..12051627 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:26 Download gff for
BS13676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7938639..7939059 | 38..458 | 99 | <- | Minus |
| arm_2R | 7939112..7939132 | 17..37 | 100 | | Minus |
BS13676.pep Sequence
Translation from 16 to 459
> BS13676.pep
MSQENFPLPSVETQAATDEGGPPLPQSPENVEENVKETKEVQESQRCSSS
RILNREHKYKQPECKASRSVKKRKRARIHKRKSTLYGDRAVNCTKCGTVT
IYFPARTKFFSCAEIDGRLFKVKRISSRKVLGGAYRKQPMKRSKLPC*
BS13676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30039-PA | 147 | CG30039-PA | 1..147 | 1..147 | 770 | 100 | Plus |
