Clone BS13677 Report

Search the DGRC for BS13677

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG30491-RA
Protein status:BS13677.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13677.3prime Sequence

800 bp (768 high quality bases) assembled on 2006-10-13

> BS13677.3prime
ATGGTCTAGAAAGCTTCTATTGTATTTTAATCATCGTTGGCTTCGTCCAC
TTTTCACTGACTGCCCAAAGCCACTTTGCCGTTTGGGTGTCGGTGGCAGC
CGGCGCCATTTCCTTCAGTTTGCAGTCGCTGAAGTATTGTCCTGTCACCT
TTTCTAGCTCGGGATCCAGAGCAACATACAACGAGGTCTGAGCACCATTT
CTCGGAGTCTTAACAAAGGGCCAAAACAAAGGCTTAACAAAGAGTCCAGC
AAAAAAATTATTGAAGAATCCCATGTGCCTGATTATTTCTGTGTCCACCA
CACCTGGATGCAGGGCATTCGCCGTTACGTTGGTGCCCTCTAATCGTTTG
GCCAACTCCCTTGTGAAGAGTACATTGGCCAACTTGCTCTGGCTGTAGGC
CTTGCCTTCATCGTAGGATTTGTCACTGTTCAGATCGCCAGTGTTTATTT
CTCCTCGAGTGTGTGCCAAACTGGATACATTTACAATCCGACTGGGTGAG
GATTTCTTGAGTAGATCCAACAGTAAATTGGTAAGCAGGAAATGACCCAT
GTGATTAACCCCCAGCTGAAGTTCGATGCCATCTGAGGTGAGAGATCTGG
GACAGCGCATAACACCGGCGTTGTTGATCAGTACGTGCAGGTGCTCCTGT
TCCCTCTTGAAGGCGGCAACAAAGTGACGGATGGACTCCTGGGAAGCCAG
GTCACATTGCCGGCAGTACACATATTTGTTCTTCGTTTCCAGCACGATTT
CCTCGCGAGCCTCCTCACATTTCTTTAGGGTTCTGCATGCCATGTAGACG

BS13677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-PA 996 CG30491-RA 213..996 800..17 3895 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-RB 1088 CG30491-RB 235..1018 800..17 3905 99.9 Minus
CG30491-RA 1414 CG30491-RA 561..1344 800..17 3905 99.9 Minus
CG2064-RA 1210 CG2064-RA 421..825 695..291 435 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7656154..7656415 507..246 1310 100 Minus
2R 25286936 2R 7656471..7656700 246..17 1150 100 Minus
2R 25286936 2R 7655944..7656100 662..506 785 100 Minus
2R 25286936 2R 7655792..7655891 762..663 500 100 Minus
2R 25286936 2R 7666696..7666901 496..291 280 75.7 Minus
2R 25286936 2R 7655697..7655737 800..760 190 97.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:30:08 has no hits.

BS13677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:52 Download gff for BS13677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-PA 213..996 17..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:16 Download gff for BS13677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 561..1344 17..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:49 Download gff for BS13677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 561..1344 17..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:49 Download gff for BS13677.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7655697..7655736 761..800 97 -> Minus
2R 7655794..7655891 663..760 100 -> Minus
2R 7655944..7656100 506..662 100 -> Minus
2R 7656156..7656415 246..505 100 -> Minus
2R 7656472..7656700 17..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:16 Download gff for BS13677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3543202..3543241 761..800 97 -> Minus
arm_2R 3543299..3543396 663..760 100 -> Minus
arm_2R 3543449..3543605 506..662 100 -> Minus
arm_2R 3543661..3543920 246..505 100 -> Minus
arm_2R 3543977..3544205 17..245 100   Minus

BS13677.5prime Sequence

823 bp (751 high quality bases) assembled on 2006-10-13

> BS13677.5prime
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGGACACAGAATAATCAG
GCACATGGGATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTT
TGTTTTGGCCCTTTGTTAAGACT

BS13677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-PA 996 CG30491-RA 1..718 17..734 3590 100 Plus
CG30491-PA 996 CG30491-RA 726..807 742..823 410 100 Plus
CG2065-PA 903 CG2065-RA 32..92 141..201 230 95 Plus
CG2064-PA 993 CG2064-RA 119..178 141..200 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-RB 1088 CG30491-RB 23..829 17..823 3990 99.8 Plus
CG30491-RA 1414 CG30491-RA 349..1155 17..823 3990 99.8 Plus
CG2065-RB 1233 CG2065-RB 186..757 110..681 595 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7656154..7656415 522..783 1215 99.2 Plus
2R 25286936 2R 7655571..7655737 103..269 835 100 Plus
2R 25286936 2R 7655944..7656100 367..523 785 100 Plus
2R 25286936 2R 7655792..7655891 267..366 500 100 Plus
2R 25286936 2R 7655420..7655506 17..103 435 100 Plus
2R 25286936 2R 7664040..7664174 110..244 435 88.1 Plus
2R 25286936 2R 7666696..7666897 533..734 260 75.2 Plus
2R 25286936 2R 7666153..7666243 110..200 245 84.6 Plus
2R 25286936 2R 7656471..7656511 783..823 205 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:47:22 has no hits.

BS13677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:53 Download gff for BS13677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:17 Download gff for BS13677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 349..1155 17..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:09 Download gff for BS13677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 349..1155 17..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:09 Download gff for BS13677.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7655944..7656100 367..523 100 -> Plus
2R 7655571..7655736 103..268 100 -> Plus
2R 7655794..7655891 269..366 100 -> Plus
2R 7655420..7655505 17..102 100 -> Plus
2R 7656156..7656415 524..783 99 -> Plus
2R 7656472..7656511 784..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:17 Download gff for BS13677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3542925..3543010 17..102 100 -> Plus
arm_2R 3543076..3543241 103..268 100 -> Plus
arm_2R 3543299..3543396 269..366 100 -> Plus
arm_2R 3543449..3543605 367..523 100 -> Plus
arm_2R 3543661..3543920 524..783 99 -> Plus
arm_2R 3543977..3544016 784..823 100   Plus

BS13677.complete Sequence

1028 bp assembled on 2006-11-01

GenBank Submission: FJ637503

> BS13677.complete
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGACACAGAAATAATCAG
GCACATGGGATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTT
TGTTTTGGCCCTTTGTTAAGACTCCGAGAAATGGTGCTCAGACCTCGTTG
TATGTTGCTCTGGATCCCGAGCTAGAAAAGGTGACAGGACAATACTTCAG
CGACTGCAAACTGAAGGAAATGGCGCCGGCTGCCACCGACACCCAAACGG
CAAAGTGGCTTTGGGCAGTCAGTGAAAAGTGGACGAAGCCAACGATGATT
AAAATACAATAGAAGCTTTCTAGACCAT

BS13677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-RB 996 CG30491-PB 1..996 17..1012 4980 100 Plus
CG30491-RA 996 CG30491-PA 1..996 17..1012 4980 100 Plus
CG2065-RB 903 CG2065-PB 1..572 110..681 580 73.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-RB 1088 CG30491-RB 23..1018 17..1012 4980 100 Plus
CG30491-RA 1414 CG30491-RA 349..1344 17..1012 4980 100 Plus
CG2065-RB 1233 CG2065-RB 186..757 110..681 580 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7656154..7656415 522..783 1310 100 Plus
2R 25286936 2R 7656471..7656700 783..1012 1150 100 Plus
2R 25286936 2R 7655571..7655737 103..269 835 100 Plus
2R 25286936 2R 7655944..7656100 367..523 785 100 Plus
2R 25286936 2R 7655792..7655891 267..366 500 100 Plus
2R 25286936 2R 7655420..7655506 17..103 435 100 Plus
2R 25286936 2R 7664040..7664174 110..244 435 88.1 Plus
2R 25286936 2R 7666696..7666901 533..738 280 75.7 Plus
2R 25286936 2R 7666153..7666243 110..200 245 84.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:47:34 has no hits.

BS13677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:34 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:03 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 293..1288 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:29 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 349..1344 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:34 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 293..1288 17..1012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:20 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
CG30491-RA 349..1344 17..1012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:20 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7655420..7655505 17..102 100 -> Plus
2R 7655571..7655736 103..268 100 -> Plus
2R 7655794..7655891 269..366 100 -> Plus
2R 7655944..7656100 367..523 100 -> Plus
2R 7656156..7656415 524..783 100 -> Plus
2R 7656472..7656700 784..1012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:29 Download gff for BS13677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3542925..3543010 17..102 100 -> Plus
arm_2R 3543076..3543241 103..268 100 -> Plus
arm_2R 3543299..3543396 269..366 100 -> Plus
arm_2R 3543449..3543605 367..523 100 -> Plus
arm_2R 3543661..3543920 524..783 100 -> Plus
arm_2R 3543977..3544205 784..1012 100   Plus

BS13677.pep Sequence

Translation from 16 to 1011

> BS13677.pep
MSLFAFLKSRTAFWLSFTGTTTGLAFFVKDLMQGGQFTKETNETGKVFIV
TGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEIVLETKNKYVYC
RQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQL
GVNHMGHFLLTNLLLDLLKKSSPSRIVNVSSLAHTRGEINTGDLNSDKSY
DEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFF
NNFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFSDCKLK
EMAPAATDTQTAKWLWAVSEKWTKPTMIKIQ*

BS13677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30491-PB 331 CG30491-PB 1..331 1..331 1723 100 Plus
CG30491-PA 331 CG30491-PA 1..331 1..331 1723 100 Plus
CG2064-PA 330 CG2064-PA 24..321 26..323 1108 69.1 Plus
CG2065-PB 300 CG2065-PB 1..299 32..330 1088 69.6 Plus
CG2065-PA 300 CG2065-PA 1..299 32..330 1088 69.6 Plus