Clone Sequence Records
BS13677.3prime Sequence
800 bp (768 high quality bases) assembled on 2006-10-13
> BS13677.3prime
ATGGTCTAGAAAGCTTCTATTGTATTTTAATCATCGTTGGCTTCGTCCAC
TTTTCACTGACTGCCCAAAGCCACTTTGCCGTTTGGGTGTCGGTGGCAGC
CGGCGCCATTTCCTTCAGTTTGCAGTCGCTGAAGTATTGTCCTGTCACCT
TTTCTAGCTCGGGATCCAGAGCAACATACAACGAGGTCTGAGCACCATTT
CTCGGAGTCTTAACAAAGGGCCAAAACAAAGGCTTAACAAAGAGTCCAGC
AAAAAAATTATTGAAGAATCCCATGTGCCTGATTATTTCTGTGTCCACCA
CACCTGGATGCAGGGCATTCGCCGTTACGTTGGTGCCCTCTAATCGTTTG
GCCAACTCCCTTGTGAAGAGTACATTGGCCAACTTGCTCTGGCTGTAGGC
CTTGCCTTCATCGTAGGATTTGTCACTGTTCAGATCGCCAGTGTTTATTT
CTCCTCGAGTGTGTGCCAAACTGGATACATTTACAATCCGACTGGGTGAG
GATTTCTTGAGTAGATCCAACAGTAAATTGGTAAGCAGGAAATGACCCAT
GTGATTAACCCCCAGCTGAAGTTCGATGCCATCTGAGGTGAGAGATCTGG
GACAGCGCATAACACCGGCGTTGTTGATCAGTACGTGCAGGTGCTCCTGT
TCCCTCTTGAAGGCGGCAACAAAGTGACGGATGGACTCCTGGGAAGCCAG
GTCACATTGCCGGCAGTACACATATTTGTTCTTCGTTTCCAGCACGATTT
CCTCGCGAGCCTCCTCACATTTCTTTAGGGTTCTGCATGCCATGTAGACG
BS13677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-PA | 996 | CG30491-RA | 213..996 | 800..17 | 3895 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-RB | 1088 | CG30491-RB | 235..1018 | 800..17 | 3905 | 99.9 | Minus |
CG30491-RA | 1414 | CG30491-RA | 561..1344 | 800..17 | 3905 | 99.9 | Minus |
CG2064-RA | 1210 | CG2064-RA | 421..825 | 695..291 | 435 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7656154..7656415 | 507..246 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 7656471..7656700 | 246..17 | 1150 | 100 | Minus |
2R | 25286936 | 2R | 7655944..7656100 | 662..506 | 785 | 100 | Minus |
2R | 25286936 | 2R | 7655792..7655891 | 762..663 | 500 | 100 | Minus |
2R | 25286936 | 2R | 7666696..7666901 | 496..291 | 280 | 75.7 | Minus |
2R | 25286936 | 2R | 7655697..7655737 | 800..760 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:30:08 has no hits.
BS13677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:52 Download gff for
BS13677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-PA | 213..996 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:16 Download gff for
BS13677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 561..1344 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:49 Download gff for
BS13677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 561..1344 | 17..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:49 Download gff for
BS13677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7655697..7655736 | 761..800 | 97 | -> | Minus |
2R | 7655794..7655891 | 663..760 | 100 | -> | Minus |
2R | 7655944..7656100 | 506..662 | 100 | -> | Minus |
2R | 7656156..7656415 | 246..505 | 100 | -> | Minus |
2R | 7656472..7656700 | 17..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:16 Download gff for
BS13677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3543202..3543241 | 761..800 | 97 | -> | Minus |
arm_2R | 3543299..3543396 | 663..760 | 100 | -> | Minus |
arm_2R | 3543449..3543605 | 506..662 | 100 | -> | Minus |
arm_2R | 3543661..3543920 | 246..505 | 100 | -> | Minus |
arm_2R | 3543977..3544205 | 17..245 | 100 | | Minus |
BS13677.5prime Sequence
823 bp (751 high quality bases) assembled on 2006-10-13
> BS13677.5prime
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGGACACAGAATAATCAG
GCACATGGGATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTT
TGTTTTGGCCCTTTGTTAAGACT
BS13677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-PA | 996 | CG30491-RA | 1..718 | 17..734 | 3590 | 100 | Plus |
CG30491-PA | 996 | CG30491-RA | 726..807 | 742..823 | 410 | 100 | Plus |
CG2065-PA | 903 | CG2065-RA | 32..92 | 141..201 | 230 | 95 | Plus |
CG2064-PA | 993 | CG2064-RA | 119..178 | 141..200 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-RB | 1088 | CG30491-RB | 23..829 | 17..823 | 3990 | 99.8 | Plus |
CG30491-RA | 1414 | CG30491-RA | 349..1155 | 17..823 | 3990 | 99.8 | Plus |
CG2065-RB | 1233 | CG2065-RB | 186..757 | 110..681 | 595 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7656154..7656415 | 522..783 | 1215 | 99.2 | Plus |
2R | 25286936 | 2R | 7655571..7655737 | 103..269 | 835 | 100 | Plus |
2R | 25286936 | 2R | 7655944..7656100 | 367..523 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7655792..7655891 | 267..366 | 500 | 100 | Plus |
2R | 25286936 | 2R | 7655420..7655506 | 17..103 | 435 | 100 | Plus |
2R | 25286936 | 2R | 7664040..7664174 | 110..244 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7666696..7666897 | 533..734 | 260 | 75.2 | Plus |
2R | 25286936 | 2R | 7666153..7666243 | 110..200 | 245 | 84.6 | Plus |
2R | 25286936 | 2R | 7656471..7656511 | 783..823 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:47:22 has no hits.
BS13677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:53 Download gff for
BS13677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:17 Download gff for
BS13677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 349..1155 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:09 Download gff for
BS13677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 349..1155 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:09 Download gff for
BS13677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7655944..7656100 | 367..523 | 100 | -> | Plus |
2R | 7655571..7655736 | 103..268 | 100 | -> | Plus |
2R | 7655794..7655891 | 269..366 | 100 | -> | Plus |
2R | 7655420..7655505 | 17..102 | 100 | -> | Plus |
2R | 7656156..7656415 | 524..783 | 99 | -> | Plus |
2R | 7656472..7656511 | 784..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:17 Download gff for
BS13677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3542925..3543010 | 17..102 | 100 | -> | Plus |
arm_2R | 3543076..3543241 | 103..268 | 100 | -> | Plus |
arm_2R | 3543299..3543396 | 269..366 | 100 | -> | Plus |
arm_2R | 3543449..3543605 | 367..523 | 100 | -> | Plus |
arm_2R | 3543661..3543920 | 524..783 | 99 | -> | Plus |
arm_2R | 3543977..3544016 | 784..823 | 100 | | Plus |
BS13677.complete Sequence
1028 bp assembled on 2006-11-01
GenBank Submission: FJ637503
> BS13677.complete
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGACACAGAAATAATCAG
GCACATGGGATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTT
TGTTTTGGCCCTTTGTTAAGACTCCGAGAAATGGTGCTCAGACCTCGTTG
TATGTTGCTCTGGATCCCGAGCTAGAAAAGGTGACAGGACAATACTTCAG
CGACTGCAAACTGAAGGAAATGGCGCCGGCTGCCACCGACACCCAAACGG
CAAAGTGGCTTTGGGCAGTCAGTGAAAAGTGGACGAAGCCAACGATGATT
AAAATACAATAGAAGCTTTCTAGACCAT
BS13677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-RB | 996 | CG30491-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG30491-RA | 996 | CG30491-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG2065-RB | 903 | CG2065-PB | 1..572 | 110..681 | 580 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-RB | 1088 | CG30491-RB | 23..1018 | 17..1012 | 4980 | 100 | Plus |
CG30491-RA | 1414 | CG30491-RA | 349..1344 | 17..1012 | 4980 | 100 | Plus |
CG2065-RB | 1233 | CG2065-RB | 186..757 | 110..681 | 580 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7656154..7656415 | 522..783 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 7656471..7656700 | 783..1012 | 1150 | 100 | Plus |
2R | 25286936 | 2R | 7655571..7655737 | 103..269 | 835 | 100 | Plus |
2R | 25286936 | 2R | 7655944..7656100 | 367..523 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7655792..7655891 | 267..366 | 500 | 100 | Plus |
2R | 25286936 | 2R | 7655420..7655506 | 17..103 | 435 | 100 | Plus |
2R | 25286936 | 2R | 7664040..7664174 | 110..244 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7666696..7666901 | 533..738 | 280 | 75.7 | Plus |
2R | 25286936 | 2R | 7666153..7666243 | 110..200 | 245 | 84.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:34 has no hits.
BS13677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:34 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:03 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 293..1288 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:29 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 349..1344 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:34 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 293..1288 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:20 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30491-RA | 349..1344 | 17..1012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:20 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7655420..7655505 | 17..102 | 100 | -> | Plus |
2R | 7655571..7655736 | 103..268 | 100 | -> | Plus |
2R | 7655794..7655891 | 269..366 | 100 | -> | Plus |
2R | 7655944..7656100 | 367..523 | 100 | -> | Plus |
2R | 7656156..7656415 | 524..783 | 100 | -> | Plus |
2R | 7656472..7656700 | 784..1012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:29 Download gff for
BS13677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3542925..3543010 | 17..102 | 100 | -> | Plus |
arm_2R | 3543076..3543241 | 103..268 | 100 | -> | Plus |
arm_2R | 3543299..3543396 | 269..366 | 100 | -> | Plus |
arm_2R | 3543449..3543605 | 367..523 | 100 | -> | Plus |
arm_2R | 3543661..3543920 | 524..783 | 100 | -> | Plus |
arm_2R | 3543977..3544205 | 784..1012 | 100 | | Plus |
BS13677.pep Sequence
Translation from 16 to 1011
> BS13677.pep
MSLFAFLKSRTAFWLSFTGTTTGLAFFVKDLMQGGQFTKETNETGKVFIV
TGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEIVLETKNKYVYC
RQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQL
GVNHMGHFLLTNLLLDLLKKSSPSRIVNVSSLAHTRGEINTGDLNSDKSY
DEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFF
NNFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFSDCKLK
EMAPAATDTQTAKWLWAVSEKWTKPTMIKIQ*
BS13677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30491-PB | 331 | CG30491-PB | 1..331 | 1..331 | 1723 | 100 | Plus |
CG30491-PA | 331 | CG30491-PA | 1..331 | 1..331 | 1723 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 24..321 | 26..323 | 1108 | 69.1 | Plus |
CG2065-PB | 300 | CG2065-PB | 1..299 | 32..330 | 1088 | 69.6 | Plus |
CG2065-PA | 300 | CG2065-PA | 1..299 | 32..330 | 1088 | 69.6 | Plus |