Clone Sequence Records
BS13679.3prime Sequence
663 bp (620 high quality bases) assembled on 2006-10-13
> BS13679.3prime
ATGGTCTAGAAAGCTTTTATGAATCAGCAATAGAGGGGATGAGCTTCCTG
TACACCTGAATTCCGTGCAGATATGTGTCGGCCCGCAAATATTCATCATG
ATTGTGCAGCAGCACCGGGGTGTTGTTGATGGGTGAAAATCCCAGAGCGG
GAATTCCCACTTGCCGGACGTAGAAGCTATCGGTGGCGCCGGGGAAAACT
CGTGTATGGGTGATCAAACCTAGTTCATCTAGTCCCTTTTTGAAGCCCAG
CCAGTAGGGATTGGAGTCGTCTATCTTGGTCACCACCGAGGGGCACTTCA
GCGTGAAATCCAGTTCCACTCCACCACCGACTTCGTTGCACCACTCGCGA
ATCTGATTCTCCATTGCATCGGCATTCTGGTTGATGGCTATGCGAATATC
AAAAGTGGCTTCTAGTACGGGGGGAACCACATTGCTTTGGACGCCACCGT
TGAGTTGGGTCAGGTTCAAAGTGGTCACATCACCGGACTGCAAGGAGGAG
TCCTCGGCCAGTAGCTTGACCTGNGTTTCTCGGAACTTCATCAGCTTATC
CATCACAAAGTGAAACTTTTCGCCAGCCGTGCTTTTGTGCAGCAGCGATC
CATGACCCTGAGTGCCACTGAAATTAAATCGAAGTTGCCACAATGTACGC
TCGGCGTAAAATA
BS13679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-PA | 1209 | CG17110-RA | 563..1209 | 663..17 | 3116 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-RB | 1677 | CG17110-RB | 644..1292 | 663..15 | 3174 | 99.4 | Minus |
| CG17110-RC | 2911 | CG17110-RC | 2135..2783 | 663..15 | 3174 | 99.4 | Minus |
| CG17110-RA | 1520 | CG17110-RA | 744..1392 | 663..15 | 3174 | 99.4 | Minus |
| CG17110-RC | 2911 | CG17110-RC | 777..1225 | 484..39 | 375 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23094380..23094794 | 636..222 | 2004 | 98.8 | Minus |
| 3R | 32079331 | 3R | 23094850..23095056 | 221..15 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 23092753..23092899 | 484..338 | 225 | 76.9 | Minus |
| 3R | 32079331 | 3R | 23093149..23093264 | 154..39 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:58:42 has no hits.
BS13679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:54 Download gff for
BS13679.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-PA | 564..1209 | 17..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:10 Download gff for
BS13679.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 745..1400 | 6..662 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:21 Download gff for
BS13679.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 745..1400 | 6..662 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:21 Download gff for
BS13679.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23094296..23094321 | 637..662 | 100 | -> | Minus |
| 3R | 23094380..23094794 | 222..636 | 99 | -> | Minus |
| 3R | 23094850..23095064 | 6..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:10 Download gff for
BS13679.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18920572..18920786 | 6..221 | 98 | | Minus |
| arm_3R | 18920018..18920043 | 637..662 | 100 | -> | Minus |
| arm_3R | 18920102..18920516 | 222..636 | 99 | -> | Minus |
BS13679.complete Sequence
1241 bp assembled on 2010-11-23
GenBank Submission: KX804829
> BS13679.complete
GAAGTTATCAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACG
AGGAAATAATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCA
GACGTGGACTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAA
ACTTAATCTCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGG
TGGTGATTATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATA
TTGAACTCACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCA
TGAGCCGTTTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCG
GTGCCCAGGACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGT
GCACTCAAAGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTT
TGTGCCCGACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCA
AGGGTGATTACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGC
ATCGCCAGTGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATT
GTGGCAACTTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGC
TGCACAAAAGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTG
ATGAAGTTCCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTT
GCAGTCCGGTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCG
TCCAAAGCAATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGC
ATAGCCATCAACCAGAATGCCGATGCAATGGAGAATCAGATTCGCGAGTG
GTGCAACGAAGTCGGTGGTGGAGTGGAACTGGATTTCACGCTGAAGTGCC
CCTCGGTGGTGACCAAGATAGACGACTCCAATCCCTACTGGCTGGGCTTC
AAAAAGGGACTAGATGAACTAGGTTTGATCACCCATACACGAGTTTTCCC
CGGCGCCACCGATAGCTTCTACGTCCGGCAAGTGGGAATTCCCGCTCTGG
GATTTTCACCCATCAACAACACCCCGGTGCTGCTGCACAATCATGATGAA
TATTTGCGGGCCGACACATATCTGCACGGAATTCAGGTGTACAGGAAGCT
CATCCCCTCTATTGCTGATTCATAAAAGCTTTCTAGACCAT
BS13679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-RB | 1209 | CG17110-PB | 1..1209 | 17..1225 | 6045 | 100 | Plus |
| CG17110-RC | 1209 | CG17110-PC | 1..1209 | 17..1225 | 6045 | 100 | Plus |
| CG17110-RA | 1209 | CG17110-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-RB | 1677 | CG17110-RB | 82..1292 | 17..1227 | 6055 | 100 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 1573..2783 | 17..1227 | 6055 | 100 | Plus |
| CG17110-RA | 1520 | CG17110-RA | 182..1392 | 17..1227 | 6055 | 100 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 362..1225 | 343..1203 | 535 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23093830..23094321 | 114..605 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 23094380..23094794 | 606..1020 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 23094850..23095056 | 1021..1227 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 23093679..23093775 | 17..113 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23095959..23096141 | 193..375 | 240 | 75.4 | Plus |
| 3R | 32079331 | 3R | 23092285..23092509 | 343..567 | 225 | 73.3 | Plus |
| 3R | 32079331 | 3R | 23092753..23092899 | 758..904 | 225 | 76.9 | Plus |
| 3R | 32079331 | 3R | 23093149..23093264 | 1088..1203 | 220 | 79.3 | Plus |
| 3R | 32079331 | 3R | 23099861..23099980 | 256..375 | 195 | 77.5 | Plus |
| 3R | 32079331 | 3R | 10676732..10676856 | 376..252 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:36:17 has no hits.
BS13679.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-23 19:04:26 Download gff for
BS13679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 182..1388 | 17..1223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:31 Download gff for
BS13679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 182..1388 | 17..1223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:37 Download gff for
BS13679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17110-RA | 182..1388 | 17..1223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:37 Download gff for
BS13679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23093679..23093775 | 17..113 | 100 | -> | Plus |
| 3R | 23093830..23094321 | 114..605 | 100 | -> | Plus |
| 3R | 23094380..23094794 | 606..1020 | 100 | -> | Plus |
| 3R | 23094850..23095052 | 1021..1223 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:31 Download gff for
BS13679.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18920572..18920774 | 1021..1223 | 100 | | Plus |
| arm_3R | 18919401..18919497 | 17..113 | 100 | -> | Plus |
| arm_3R | 18919552..18920043 | 114..605 | 100 | -> | Plus |
| arm_3R | 18920102..18920516 | 606..1020 | 100 | -> | Plus |
BS13679.pep Sequence
Translation from 16 to 1224
> BS13679.pep
MCTCTEQWKNDEEIIIFQEYLRIPSVHPDVDYTACVEFLKRQANKLNLRV
DVVYPVVPSKPVVIMKWLGKHPELKSIILNSHMDVVPVFPEKWTHEPFGA
HIDAQGRIYARGAQDMKSVGCQYMAAVRALKASGYQPKRTVYLTFVPDEE
TGGHMGMAEFVKGDYFKAMNVGFSLDEGIASEDDTYPVFYAERTLWQLRF
KFSGTSGHGSLLHKSTAGEKFHFVMDKLMKFRETQVKLLAEDSSLQSGDV
TTLNLTQLNGGVQSNVVPPVLEATFDIRIAINQNADAMENQIREWCNEVG
GGVELDFTLKCPSVVTKIDDSNPYWLGFKKGLDELGLITHTRVFPGATDS
FYVRQVGIPALGFSPINNTPVLLHNHDEYLRADTYLHGIQVYRKLIPSIA
DS*
BS13679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-PB | 402 | CG17110-PB | 1..402 | 1..402 | 2134 | 100 | Plus |
| CG17110-PC | 402 | CG17110-PC | 1..402 | 1..402 | 2134 | 100 | Plus |
| CG17110-PA | 402 | CG17110-PA | 1..402 | 1..402 | 2134 | 100 | Plus |
| CG6726-PC | 401 | CG6726-PC | 3..401 | 5..402 | 1526 | 70.2 | Plus |
| CG6726-PA | 401 | CG6726-PA | 3..401 | 5..402 | 1526 | 70.2 | Plus |
