Clone Sequence Records
BS13701.5prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS13701.5prime
GAAGTTATCAGTCGACATGGATATGAACTACCAGTACAAGAAGGACCACT
CGTTCGACAAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCG
GACCGTGTGCCCGTCATCGTGGAAAAGGCGCCGAAGACGCGTTACGCGGA
GCTGGACAAGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGT
TCTACTTTCTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTC
TTCTTCTTCGTAAACAATGTGATCCCACCGACATCGGCCACCATGGGTGC
ACTGTACCAGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATA
CCGATGAGAACGTCTATGGACGGCAGTAGAAGCTTTCTAGACC
BS13701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12334-PA | 363 | Atg8b-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
CG32672-PA | 366 | Atg8a-RA | 52..98 | 74..120 | 160 | 93.6 | Plus |
CG32672-PA | 366 | Atg8a-RA | 175..275 | 197..297 | 155 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..517 | 17..380 | 1820 | 100 | Plus |
Atg8b-RA | 609 | CG12334-RA | 135..498 | 17..380 | 1820 | 100 | Plus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 23..360 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724547..17724910 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 10765604..10765802 | 311..113 | 470 | 82.4 | Minus |
X | 23542271 | X | 10767979..10768070 | 114..23 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:44:03 has no hits.
BS13701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:59 Download gff for
BS13701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12334-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:14 Download gff for
BS13701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:08 Download gff for
BS13701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:08 Download gff for
BS13701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724539..17724919 | 8..388 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:14 Download gff for
BS13701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550261..13550641 | 8..388 | 97 | | Minus |
BS13701.3prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS13701.3prime
ATGGTCTAGAAAGCTTCTACTGCCGTCCATAGACGTTCTCATCGGTATAG
GAAATGTAGAGGAAGTAGTCCTTGTCGAAGTGCTCCTGGTACAGTGCACC
CATGGTGGCCGATGTCGGTGGGATCACATTGTTTACGAAGAAGAAGAGGG
CGTCGTCGGGACGCAGATTGATACGCTTGCGGATGAGAAAGTAGAACTGG
CCCACTGTCAGGTCCGCCGGCACCAGGTACTTCTTCTTGTCCAGCTCCGC
GTAACGCGTCTTCGGCGCCTTTTCCACGATGACGGGCACACGGTCCGGAT
ACTTGCGCCGGATCTTGTCGCCTTCGTTGCGGCGCTTGTCGAACGAGTGG
TCCTTCTTGTACTGGTAGTTCATATCCATGTCGACTGATAACT
BS13701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12334-PA | 363 | Atg8b-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
CG32672-PA | 366 | Atg8a-RA | 52..98 | 322..276 | 160 | 93.6 | Minus |
CG32672-PA | 366 | Atg8a-RA | 175..275 | 199..99 | 155 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..517 | 379..16 | 1820 | 100 | Minus |
Atg8b-RA | 609 | CG12334-RA | 135..498 | 379..16 | 1820 | 100 | Minus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 373..36 | 775 | 82 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724547..17724910 | 16..379 | 1820 | 100 | Plus |
X | 23542271 | X | 10765604..10765802 | 85..283 | 470 | 82.4 | Plus |
X | 23542271 | X | 10767979..10768070 | 282..373 | 235 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:09:14 has no hits.
BS13701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:59 Download gff for
BS13701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12334-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:00 Download gff for
BS13701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:34 Download gff for
BS13701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:34 Download gff for
BS13701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724539..17724919 | 8..388 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:00 Download gff for
BS13701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550261..13550641 | 8..388 | 97 | | Plus |
BS13701.complete Sequence
395 bp assembled on 2006-11-01
GenBank Submission: FJ637504
> BS13701.complete
GAAGTTATCAGTCGACATGGATATGAACTACCAGTACAAGAAGGACCACT
CGTTCGACAAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCG
GACCGTGTGCCCGTCATCGTGGAAAAGGCGCCGAAGACGCGTTACGCGGA
GCTGGACAAGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGT
TCTACTTTCTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTC
TTCTTCTTCGTAAACAATGTGATCCCACCGACATCGGCCACCATGGGTGC
ACTGTACCAGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATA
CCGATGAGAACGTCTATGGACGGCAGTAGAAGCTTTCTAGACCAT
BS13701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 363 | CG12334-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
Atg8b-RA | 363 | CG12334-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Atg8a-RA | 366 | CG32672-PA | 1..338 | 23..360 | 775 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-RB | 654 | CG12334-RB | 154..517 | 17..380 | 1820 | 100 | Plus |
Atg8b-RA | 609 | CG12334-RA | 135..498 | 17..380 | 1820 | 100 | Plus |
Atg8a-RA | 1214 | CG32672-RA | 269..606 | 23..360 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17724547..17724910 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 10765604..10765802 | 311..113 | 470 | 82.4 | Minus |
X | 23542271 | X | 10767979..10768070 | 114..23 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:03 has no hits.
BS13701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:16 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:42 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:55 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 135..497 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:16 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 126..506 | 8..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:13 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg8b-RA | 135..497 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:13 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17724548..17724910 | 17..379 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:55 Download gff for
BS13701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13550270..13550632 | 17..379 | 100 | | Minus |
BS13701.pep Sequence
Translation from 16 to 378
> BS13701.pep
MDMNYQYKKDHSFDKRRNEGDKIRRKYPDRVPVIVEKAPKTRYAELDKKK
YLVPADLTVGQFYFLIRKRINLRPDDALFFFVNNVIPPTSATMGALYQEH
FDKDYFLYISYTDENVYGRQ*
BS13701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg8b-PB | 120 | CG12334-PB | 1..120 | 1..120 | 641 | 100 | Plus |
Atg8b-PA | 120 | CG12334-PA | 1..120 | 1..120 | 641 | 100 | Plus |
Atg8a-PA | 121 | CG32672-PA | 1..116 | 3..118 | 530 | 82.8 | Plus |
Atg8a-PC | 107 | CG32672-PC | 7..102 | 23..118 | 401 | 78.1 | Plus |
Atg8a-PB | 96 | CG32672-PB | 6..91 | 33..118 | 395 | 84.9 | Plus |