Clone BS13702 Report

Search the DGRC for BS13702

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG13611-RA
Protein status:BS13702.pep: full length peptide match
Sequenced Size:1466

Clone Sequence Records

BS13702.3prime Sequence

580 bp (527 high quality bases) assembled on 2006-10-13

> BS13702.3prime
ATGGTCTAGAAAGCTTCTAGATTGACCTGGCATAACCCAGGTTCAGCAGC
CAGATGAGTCCGATCACAAAGAAGCTGTAGAAGGTGACATTGTAGAGATT
GAGGCGACTGAGGAGTCCCCTAATTCTGCCGGCGGAGACAACATCCTGGC
CATTCTTTGGCTGCTCGACGAGCATGTCCTTCCAGCTGACCACCTGCGGT
CGCACCACAAAGACGGCATTCACCGCCGCACGGAAGCCACTCTGCACCGC
ACCACCCATCAGGCTGCGATAGCTGGTGCCCACGGCCGAGGAACTGGACC
AGATGACCCGATGCCAGGGCTTGGTCTGCGGCTTATGCTGCGCCACATTC
AGCTCATCCGTGAAGCACTGGCACTCCAGTGGCTGGCGCATCTCCTCGCC
GAAGTGTTCGGCCAACAGATCGACGACATCTTGCAGCACTTCGTCCTGAT
CCTCCGGCAAGTGCAGCACGTATCCGCAAAAAGCTGGACATCCGACACTC
GTGACCACTGACCATCGGCTGGGAGCTGATAAAGTTGCCGGAGTAACCGA
GATCCGTCCAAACGGACTTGCCGTATCGCA

BS13702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-PA 1434 CG13611-RA 872..1434 580..17 2730 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-RA 1548 CG13611-RA 931..1493 580..17 2765 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24280959..24281521 580..17 2740 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 04:20:13 has no hits.

BS13702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:00 Download gff for BS13702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-PA 873..1434 17..579 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:58 Download gff for BS13702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 932..1499 11..579 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:12 Download gff for BS13702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 932..1499 11..579 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:12 Download gff for BS13702.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24280960..24281527 11..579 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:58 Download gff for BS13702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20106682..20107249 11..579 98   Minus

BS13702.5prime Sequence

635 bp (620 high quality bases) assembled on 2006-10-13

> BS13702.5prime
GAAGTTATCAGTCGACATGGATTTGCCCTTTGGCACACAGACTCCGGAAC
TAGATGTACTGATTGTGGGCGGGGGCCTCTCGGGCCTGGCCTCTGCCCTG
AAAATCCTGGCCATGGAGAGCACCCTGAAGGTGAGAATGATTGAGGCTAG
CGATGCCTTGGGCGGCCTGATGGGCCAGAATAGCACCCGACTGGTGGATG
CAGCACAGCAGGACATGCTGGCCCTCCTGACCCTCATTCACTTGTCACCG
CGGCGGCGGAGGAGCATCAGTGGCAGTCTTCGGAGATGCTGGGATCTGGA
TCGTGGACTCACAGCTATGCCGGCCAAATTTGAACTAGGACGATACATCG
ATATGCTGGACTTACGGATGCCCAAGTTTCGCTCGAAACGATTCAATCTT
CGTGAGCGAGTGTCCAACATGGAGCAGCACATTTGCCACCATTTGTTCTT
TAGCAAGTCAAGGAACTTCATGTTGAACCTGGTGCAGCTGGTCTGCGGTG
TTCCTGCCAATGAGGTGGACTAACGATGTCTTTATGTCCGTCTGCAGCTC
CTGTGGTGGTCTCAAAGTTCTGATTGACTTCTACTTCACCTACCCCACAA
GCTTCTATGAGATATCCACTCAGATGCTGATAGAG

BS13702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-PA 1434 CG13611-RA 1..618 17..635 3055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-RA 1548 CG13611-RA 60..677 17..635 3070 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24279631..24280010 17..396 1900 100 Plus
3R 32079331 3R 24280070..24280252 397..580 870 99.5 Plus
3R 32079331 3R 24280651..24280705 581..635 275 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:20:22 has no hits.

BS13702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:00 Download gff for BS13702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-PA 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:00 Download gff for BS13702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..677 17..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:14 Download gff for BS13702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..677 17..635 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:14 Download gff for BS13702.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24280070..24280252 397..580 99 -> Plus
3R 24280651..24280705 581..635 100   Plus
3R 24279631..24280010 17..396 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:00 Download gff for BS13702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20105353..20105732 17..396 100 -> Plus
arm_3R 20105792..20105974 397..580 99 -> Plus
arm_3R 20106373..20106427 581..635 100   Plus

BS13702.complete Sequence

1466 bp assembled on 2009-12-07

GenBank Submission: KX802154

> BS13702.complete
GAAGTTATCAGTCGACATGGATTTGCCCTTTGGCACACAGACTCCGGAAC
TAGATGTACTGATTGTGGGCGGGGGCCTCTCGGGCCTGGCCTCTGCCCTG
AAAATCCTGGCCATGGAGAGCACCCTGAAGGTGAGAATGATTGAGGCTAG
CGATGCCTTGGGCGGCCTGATGGGCCAGAATAGCACCCGACTGGTGGATG
CAGCACAGCAGGACATGCTGGCCCTCCTGACCCTCATTCACTTGTCACCG
CGGCGGCGGAGGAGCATCAGTGGCAGTCTTCGGAGATGCTGGGATCTGGA
TCGTGGACTCACAGCTATGCCGGCCAAATTTGAACTAGGACGATACATCG
ATATGCTGGACTTACGGATGCCCAAGTTTCGCTCGAAACGATTCAATCTT
CGTGAGCGAGTGTCCAACATGGAGCAGCACATTTGCCACCATTTGTTCTT
TAGCAAGTCAAGGAACTTCATGTTGAACCTGGTGCAGCTGGTCTGCGGTG
TTCCTGCCAATGAGGTGGACTACGATGTCTTTATGTCCGTCTGCAGCTCC
TGTGGTGGTCTCAAAGTTCTGATTGACTTCTACTTCACCTACCCCACAAG
CTTCTATGAGATATCCACTCAGATGCTGATAGAGAACATTTTGGAGCAGC
TGCAATTTATCAAGATTATCCTAAACTGCAGAGCCGTCAGATTAGAGCAC
TTTAAGAACTATGTCCAGGTGACGGATGATCAGGGTAACAAGCACACGGC
TCAGGCTGCGATCCTGGCCATTCCCTGGAACAAGGTGCAGAAGTTGCACT
TCGAGCCGCGCATACCAAAGGTCTTCCTACCACGGACGACATCCAGATCT
GGCCGAAAGGGCCGCCAGGTGATCAGCCAGTTTCAGTTGCGATACGGCAA
GTCCGTTTGGACGGATCTCGGTTACTCCGGCAACTTTCTCAGCTCCCAGC
CGATGGTCAGTGGTCACGAGTGTCGGATGTCCAGCTTTTGCGGCTACGTG
CTGCACTTGCCGGAGGATCAGGACGAAGTGCTGCAAGATGTCGTCGATCT
GTTGGCCGAACACTTCGGCGAGGAGATGCGCCAGCCACTGGAGTGCCAGT
GCTTCACGGATGAGCTGAATGTGGCGCAGCATAAGCCGCAGACCAAGCCC
TGGCATCGGGTCATCTGGTCCAGTTCCTCGGCCGTGGGCACCAGCTATCG
CAGCCTGATGGGTGGTGCGGTGCAGAGTGGCTTCCGTGCGGCGGTGAATG
CCGTCTTTGTGGTGCGACCGCAGGTGGTCAGCTGGAAGGACATGCTCGTC
GAGCAGCCAAAGAATGGCCAGGATGTTGTCTCCGCCGGCAGAATTAGGGG
ACTCCTCAGTCGCCTCAATCTCTACAATGTCACCTTCTACAGCTTCTTTG
TGATCGGACTCATCTGGCTGCTGAACCTGGGTTATGCCAGGTCAATCTAG
AAGCTTTCTAGACCAT

BS13702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-RA 1434 CG13611-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-RA 1548 CG13611-RA 60..1493 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24280651..24281521 580..1450 4355 100 Plus
3R 32079331 3R 24279631..24280010 17..396 1900 100 Plus
3R 32079331 3R 24280070..24280252 397..579 915 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:13:01 has no hits.

BS13702.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:49 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..1493 17..1450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:51 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..1493 17..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:26 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..1493 17..1450 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:23 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 60..1493 17..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:23 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24279631..24280010 17..396 100 -> Plus
3R 24280070..24280252 397..579 100 -> Plus
3R 24280651..24281521 580..1450 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:51 Download gff for BS13702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20105353..20105732 17..396 100 -> Plus
arm_3R 20105792..20105974 397..579 100 -> Plus
arm_3R 20106373..20107243 580..1450 100   Plus

BS13702.pep Sequence

Translation from 16 to 1449

> BS13702.pep
MDLPFGTQTPELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG
LMGQNSTRLVDAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTA
MPAKFELGRYIDMLDLRMPKFRSKRFNLRERVSNMEQHICHHLFFSKSRN
FMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEIS
TQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTDDQGNKHTAQAAIL
AIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTD
LGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHF
GEEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVGTSYRSLMGG
AVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRL
NLYNVTFYSFFVIGLIWLLNLGYARSI*

BS13702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-PA 477 CG13611-PA 1..477 1..477 2478 100 Plus