Clone Sequence Records
BS13702.3prime Sequence
580 bp (527 high quality bases) assembled on 2006-10-13
> BS13702.3prime
ATGGTCTAGAAAGCTTCTAGATTGACCTGGCATAACCCAGGTTCAGCAGC
CAGATGAGTCCGATCACAAAGAAGCTGTAGAAGGTGACATTGTAGAGATT
GAGGCGACTGAGGAGTCCCCTAATTCTGCCGGCGGAGACAACATCCTGGC
CATTCTTTGGCTGCTCGACGAGCATGTCCTTCCAGCTGACCACCTGCGGT
CGCACCACAAAGACGGCATTCACCGCCGCACGGAAGCCACTCTGCACCGC
ACCACCCATCAGGCTGCGATAGCTGGTGCCCACGGCCGAGGAACTGGACC
AGATGACCCGATGCCAGGGCTTGGTCTGCGGCTTATGCTGCGCCACATTC
AGCTCATCCGTGAAGCACTGGCACTCCAGTGGCTGGCGCATCTCCTCGCC
GAAGTGTTCGGCCAACAGATCGACGACATCTTGCAGCACTTCGTCCTGAT
CCTCCGGCAAGTGCAGCACGTATCCGCAAAAAGCTGGACATCCGACACTC
GTGACCACTGACCATCGGCTGGGAGCTGATAAAGTTGCCGGAGTAACCGA
GATCCGTCCAAACGGACTTGCCGTATCGCA
BS13702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-PA | 1434 | CG13611-RA | 872..1434 | 580..17 | 2730 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-RA | 1548 | CG13611-RA | 931..1493 | 580..17 | 2765 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24280959..24281521 | 580..17 | 2740 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:20:13 has no hits.
BS13702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:00 Download gff for
BS13702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-PA | 873..1434 | 17..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:58 Download gff for
BS13702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 932..1499 | 11..579 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:12 Download gff for
BS13702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 932..1499 | 11..579 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:12 Download gff for
BS13702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24280960..24281527 | 11..579 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:58 Download gff for
BS13702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20106682..20107249 | 11..579 | 98 | | Minus |
BS13702.5prime Sequence
635 bp (620 high quality bases) assembled on 2006-10-13
> BS13702.5prime
GAAGTTATCAGTCGACATGGATTTGCCCTTTGGCACACAGACTCCGGAAC
TAGATGTACTGATTGTGGGCGGGGGCCTCTCGGGCCTGGCCTCTGCCCTG
AAAATCCTGGCCATGGAGAGCACCCTGAAGGTGAGAATGATTGAGGCTAG
CGATGCCTTGGGCGGCCTGATGGGCCAGAATAGCACCCGACTGGTGGATG
CAGCACAGCAGGACATGCTGGCCCTCCTGACCCTCATTCACTTGTCACCG
CGGCGGCGGAGGAGCATCAGTGGCAGTCTTCGGAGATGCTGGGATCTGGA
TCGTGGACTCACAGCTATGCCGGCCAAATTTGAACTAGGACGATACATCG
ATATGCTGGACTTACGGATGCCCAAGTTTCGCTCGAAACGATTCAATCTT
CGTGAGCGAGTGTCCAACATGGAGCAGCACATTTGCCACCATTTGTTCTT
TAGCAAGTCAAGGAACTTCATGTTGAACCTGGTGCAGCTGGTCTGCGGTG
TTCCTGCCAATGAGGTGGACTAACGATGTCTTTATGTCCGTCTGCAGCTC
CTGTGGTGGTCTCAAAGTTCTGATTGACTTCTACTTCACCTACCCCACAA
GCTTCTATGAGATATCCACTCAGATGCTGATAGAG
BS13702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-PA | 1434 | CG13611-RA | 1..618 | 17..635 | 3055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-RA | 1548 | CG13611-RA | 60..677 | 17..635 | 3070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24279631..24280010 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 24280070..24280252 | 397..580 | 870 | 99.5 | Plus |
3R | 32079331 | 3R | 24280651..24280705 | 581..635 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:20:22 has no hits.
BS13702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:00 Download gff for
BS13702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-PA | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:00 Download gff for
BS13702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..677 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:14 Download gff for
BS13702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..677 | 17..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:14 Download gff for
BS13702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24280070..24280252 | 397..580 | 99 | -> | Plus |
3R | 24280651..24280705 | 581..635 | 100 | | Plus |
3R | 24279631..24280010 | 17..396 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:00 Download gff for
BS13702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20105353..20105732 | 17..396 | 100 | -> | Plus |
arm_3R | 20105792..20105974 | 397..580 | 99 | -> | Plus |
arm_3R | 20106373..20106427 | 581..635 | 100 | | Plus |
BS13702.complete Sequence
1466 bp assembled on 2009-12-07
GenBank Submission: KX802154
> BS13702.complete
GAAGTTATCAGTCGACATGGATTTGCCCTTTGGCACACAGACTCCGGAAC
TAGATGTACTGATTGTGGGCGGGGGCCTCTCGGGCCTGGCCTCTGCCCTG
AAAATCCTGGCCATGGAGAGCACCCTGAAGGTGAGAATGATTGAGGCTAG
CGATGCCTTGGGCGGCCTGATGGGCCAGAATAGCACCCGACTGGTGGATG
CAGCACAGCAGGACATGCTGGCCCTCCTGACCCTCATTCACTTGTCACCG
CGGCGGCGGAGGAGCATCAGTGGCAGTCTTCGGAGATGCTGGGATCTGGA
TCGTGGACTCACAGCTATGCCGGCCAAATTTGAACTAGGACGATACATCG
ATATGCTGGACTTACGGATGCCCAAGTTTCGCTCGAAACGATTCAATCTT
CGTGAGCGAGTGTCCAACATGGAGCAGCACATTTGCCACCATTTGTTCTT
TAGCAAGTCAAGGAACTTCATGTTGAACCTGGTGCAGCTGGTCTGCGGTG
TTCCTGCCAATGAGGTGGACTACGATGTCTTTATGTCCGTCTGCAGCTCC
TGTGGTGGTCTCAAAGTTCTGATTGACTTCTACTTCACCTACCCCACAAG
CTTCTATGAGATATCCACTCAGATGCTGATAGAGAACATTTTGGAGCAGC
TGCAATTTATCAAGATTATCCTAAACTGCAGAGCCGTCAGATTAGAGCAC
TTTAAGAACTATGTCCAGGTGACGGATGATCAGGGTAACAAGCACACGGC
TCAGGCTGCGATCCTGGCCATTCCCTGGAACAAGGTGCAGAAGTTGCACT
TCGAGCCGCGCATACCAAAGGTCTTCCTACCACGGACGACATCCAGATCT
GGCCGAAAGGGCCGCCAGGTGATCAGCCAGTTTCAGTTGCGATACGGCAA
GTCCGTTTGGACGGATCTCGGTTACTCCGGCAACTTTCTCAGCTCCCAGC
CGATGGTCAGTGGTCACGAGTGTCGGATGTCCAGCTTTTGCGGCTACGTG
CTGCACTTGCCGGAGGATCAGGACGAAGTGCTGCAAGATGTCGTCGATCT
GTTGGCCGAACACTTCGGCGAGGAGATGCGCCAGCCACTGGAGTGCCAGT
GCTTCACGGATGAGCTGAATGTGGCGCAGCATAAGCCGCAGACCAAGCCC
TGGCATCGGGTCATCTGGTCCAGTTCCTCGGCCGTGGGCACCAGCTATCG
CAGCCTGATGGGTGGTGCGGTGCAGAGTGGCTTCCGTGCGGCGGTGAATG
CCGTCTTTGTGGTGCGACCGCAGGTGGTCAGCTGGAAGGACATGCTCGTC
GAGCAGCCAAAGAATGGCCAGGATGTTGTCTCCGCCGGCAGAATTAGGGG
ACTCCTCAGTCGCCTCAATCTCTACAATGTCACCTTCTACAGCTTCTTTG
TGATCGGACTCATCTGGCTGCTGAACCTGGGTTATGCCAGGTCAATCTAG
AAGCTTTCTAGACCAT
BS13702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-RA | 1434 | CG13611-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-RA | 1548 | CG13611-RA | 60..1493 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24280651..24281521 | 580..1450 | 4355 | 100 | Plus |
3R | 32079331 | 3R | 24279631..24280010 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 24280070..24280252 | 397..579 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:13:01 has no hits.
BS13702.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:49 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..1493 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:51 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..1493 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:26 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..1493 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:23 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13611-RA | 60..1493 | 17..1450 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:23 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24279631..24280010 | 17..396 | 100 | -> | Plus |
3R | 24280070..24280252 | 397..579 | 100 | -> | Plus |
3R | 24280651..24281521 | 580..1450 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:51 Download gff for
BS13702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20105353..20105732 | 17..396 | 100 | -> | Plus |
arm_3R | 20105792..20105974 | 397..579 | 100 | -> | Plus |
arm_3R | 20106373..20107243 | 580..1450 | 100 | | Plus |
BS13702.pep Sequence
Translation from 16 to 1449
> BS13702.pep
MDLPFGTQTPELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG
LMGQNSTRLVDAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTA
MPAKFELGRYIDMLDLRMPKFRSKRFNLRERVSNMEQHICHHLFFSKSRN
FMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEIS
TQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTDDQGNKHTAQAAIL
AIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTD
LGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHF
GEEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVGTSYRSLMGG
AVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRL
NLYNVTFYSFFVIGLIWLLNLGYARSI*
BS13702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13611-PA | 477 | CG13611-PA | 1..477 | 1..477 | 2478 | 100 | Plus |