Clone Sequence Records
BS13703.3prime Sequence
705 bp (648 high quality bases) assembled on 2006-10-13
> BS13703.3prime
ATGGTCTAGAAAGCTTTTAATCGGCAACAAAATCGTCCGATTTTATCTTC
CTTGTGCTGCAACAGTCAATCTTTTTACTCGGGTCCTGAAATATCACCTG
AGACCAGTGATCTTTGGAGCATTGTTGTAATTCCGAAAGGTAATCCTCGA
AGTGTTTGAAACGAATTTCCCGGGTATTGGGACAACCGACGCCGTGATAA
TAGCTGCACAAGCTATCGCATATCCAGTTTCGCTGTCCGGAATCACTTGC
GTATTCCTCACTCTGTGCGTCATTGCCCTCCAAGGCATCCTCGTACATGC
GCGACGTTATTCTCGATATGGATTCGTCGATCTTGTACTCCACCTCCGGG
TTGAAAATCAGCTTCATCACCAACGGGTGATCCTCCTCCCGTCGCGCATA
TAGTAGATACCACAATGGCATCAGGTTGAATCGAATACAGGACATTAAAC
GACGTACGTGCACTTTCCTCTTGTTCCAATCGTGACCCAGCCATCGAACA
GCTATAAAGAAAACCTCAATCTCGGTGTTCACACAGATTTGATCGGATTC
GAGCAAAAAAATCAGATGGGAGGTCGGCAGATCGAGGAAATCCCTGGTGG
CCACAAAGGTGAGCAGAAACTTGCGGATCCTAGTCAGCATCAAATTGCGA
ACTACATCCATGGCGGGATTGTCCTTCGACTCGACGTATAGGACACATGC
CGTAT
BS13703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-PA | 1323 | CG12857-RA | 635..1323 | 705..17 | 3445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RA | 1584 | CG12857-RA | 681..1369 | 705..17 | 3445 | 100 | Minus |
| CG12857-RB | 1571 | CG12857-RB | 681..1356 | 705..17 | 3240 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14758122..14758621 | 17..516 | 2500 | 100 | Plus |
| 2R | 25286936 | 2R | 14758673..14758865 | 513..705 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:02:19 has no hits.
BS13703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:01 Download gff for
BS13703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-PA | 635..1323 | 17..705 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:47 Download gff for
BS13703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 681..1371 | 12..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:37 Download gff for
BS13703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 681..1371 | 12..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:37 Download gff for
BS13703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14758675..14758865 | 515..705 | 100 | | Plus |
| 2R | 14758120..14758619 | 12..514 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:47 Download gff for
BS13703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10645625..10646124 | 12..514 | 99 | <- | Plus |
| arm_2R | 10646180..10646370 | 515..705 | 100 | | Plus |
BS13703.5prime Sequence
752 bp (678 high quality bases) assembled on 2006-10-13
> BS13703.5prime
GAAGTTATCAGTCGACATGGAGGAGCTAATGAGGCAGAACGGACAGAAAT
GCGAGAGGCAGGAACTCACCTGCAGCGTTTTATTTACCAATCCCAAGCTT
AGTGCCGAGAAGTTATCCTCCAATGATGAAATAAACTCCATTGCGAGATT
CGTATCGAAGGCGGAGGATCTCGAAATGCATAGAGTGTTCAGTAAGATAT
CAAAGAATGGTGTCGAGGAGACCACGTCTCTGAATCGCTCCCTCTTCGAG
TTCGGTCATAATTTCGAGGATGCCGATGGCTGGCTGAAACTGGAGCAGCC
TTGCAAGGATCGGCTGGCCACGGTGCTGCGCTACATGTTCGAGTCCCATC
TGAAGACCACTGTGCAGATAGAAATCAACAATATGTACTTCAATTGCCAC
TTCATCGTGCTGCAGGTGTACTCTCGCTTCTTTAGTGAACTGGAGATGAT
TCCGCTGCTGGTCACCCTGCCCGAGAAGATCGTGTCCCAGAAGGCCTTTA
TGCTCTCCTACAAATGGATGCTGAGCGATGAGCCCGTCCTGGAGCTGGCT
CACATTGTGGAGGTCTATGTGGCCGCCACTTATTTGAGGATCTCTGGTCT
GGCGGCGCATTGTTGGAAATATTTCGATGATGAGGAATACTACAACGAGG
ATACGGCATGTGTCCTATACGTCGAGTCGAAGGACAATCCCGCCATGGAT
GTAGTTCGCAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCTT
TG
BS13703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-PA | 1323 | CG12857-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RB | 1571 | CG12857-RB | 42..782 | 12..752 | 3690 | 99.9 | Plus |
| CG12857-RA | 1584 | CG12857-RA | 42..782 | 12..752 | 3690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14758764..14759425 | 752..91 | 3310 | 100 | Minus |
| 2R | 25286936 | 2R | 14759483..14759561 | 90..12 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:09:37 has no hits.
BS13703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:01 Download gff for
BS13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-PA | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:07 Download gff for
BS13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 39..782 | 7..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:41 Download gff for
BS13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 39..782 | 7..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:41 Download gff for
BS13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14758764..14759425 | 91..752 | 100 | <- | Minus |
| 2R | 14759483..14759564 | 7..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:07 Download gff for
BS13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10646269..10646930 | 91..752 | 100 | <- | Minus |
| arm_2R | 10646988..10647069 | 7..90 | 95 | | Minus |
BS13703.complete Sequence
1355 bp assembled on 2006-11-01
GenBank Submission: FJ637505
> BS13703.complete
GAAGTTATCAGTCGACATGGAGGAGCTAATGAGGCAGAACGGACAGAAAT
GCGAGAGGCAGGAACTCACCTGCAGCGTTTTATTTACCAATCCCAAGCTT
AGTGCCGAGAAGTTATCCTCCAATGATGAAATAAACTCCATTGCGAGATT
CGTATCGAAGGCGGAGGATCTCGAAATGCATAGAGTGTTCAGTAAGATAT
CAAAGAATGGTGTCGAGGAGACCACGTCTCTGAATCGCTCCCTCTTCGAG
TTCGGTCATAATTTCGAGGATGCCGATGGCTGGCTGAAACTGGAGCAGCC
TTGCAAGGATCGGCTGGCCACGGTGCTGCGCTACATGTTCGAGTCCCATC
TGAAGACCACTGTGCAGATAGAAATCAACAATATGTACTTCAATTGCCAC
TTCATCGTGCTGCAGGTGTACTCTCGCTTCTTTAGTGAACTGGAGATGAT
TCCGCTGCTGGTCACCCTGCCCGAGAAGATCGTGTCCCAGAAGGCCTTTA
TGCTCTCCTACAAATGGATGCTGAGCGATGAGCCCGTCCTGGAGCTGGCT
CACATTGTGGAGGTCTATGTGGCCGCCACTTATTTGAGGATCTCTGGTCT
GGCGGCGCATTGTTGGAAATATTTCGATGATGAGGAATACTACAACGAGG
ATACGGCATGTGTCCTATACGTCGAGTCGAAGGACAATCCCGCCATGGAT
GTAGTTCGCAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCTT
TGTGGCCACCAGGGATTTCCTCGATCTGCCGACCTCCCATCTGATTTTTT
TGCTCGAATCCGATCAAATCTGTGTGAACACCGAGATTGAGGTTTTCTTT
ATAGCTGTTCGATGGCTGGGTCACGATTGGAACAAGAGGAAAGTGCACGT
ACGTCGTTTAATGTCCTGTATTCGATTCAACCTGATGCCATTGTGGTATC
TACTATATGCGCGACGGGAGGAGGATCACCCGTTGGTGATGAAGCTGATT
TTCAACCCGGAGGTGGAGTACAAGATCGACGAATCCATATCGAGAATAAC
GTCGCGCATGTACGAGGATGCCTTGGAGGGCAATGACGCACAGAGTGAGG
AATACGCAAGTGATTCCGGACAGCGAAACTGGATATGCGATAGCTTGTGC
AGCTATTATCACGGCGTCGGTTGTCCCAATACCCGGGAAATTCGTTTCAA
ACACTTCGAGGATTACCTTTCGGAATTACAACAATGCTCCAAAGATCACT
GGTCTCAGGTGATATTTCAGGACCCGAGTAAAAAGATTGACTGTTGCAGC
ACAAGGAAGATAAAATCGGACGATTTTGTTGCCGATTAAAAGCTTTCTAG
ACCAT
BS13703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RA | 1323 | CG12857-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
| CG12857-RB | 882 | CG12857-PB | 1..882 | 17..911 | 4245 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RA | 1584 | CG12857-RA | 42..1369 | 12..1339 | 6625 | 99.9 | Plus |
| CG12857-RB | 1571 | CG12857-RB | 42..1356 | 12..1339 | 6395 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14758673..14759425 | 843..91 | 3765 | 100 | Minus |
| 2R | 25286936 | 2R | 14758122..14758621 | 1339..840 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 14759483..14759561 | 90..12 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:35:32 has no hits.
BS13703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:17 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 1..1323 | 17..1339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:43 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 31..1363 | 7..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:14:05 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 47..1367 | 17..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:17 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 31..1363 | 7..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:51 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 47..1367 | 17..1337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:51 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14758124..14758619 | 842..1337 | 100 | <- | Minus |
| 2R | 14758675..14759425 | 91..841 | 100 | <- | Minus |
| 2R | 14759483..14759556 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:14:05 Download gff for
BS13703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10645629..10646124 | 842..1337 | 100 | <- | Minus |
| arm_2R | 10646180..10646930 | 91..841 | 100 | <- | Minus |
| arm_2R | 10646988..10647061 | 17..90 | 100 | | Minus |
BS13703.pep Sequence
Translation from 16 to 1338
> BS13703.pep
MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE
DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL
ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT
LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW
KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD
FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS
CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE
DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY
LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVAD*
BS13703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-PA | 440 | CG12857-PA | 1..440 | 1..440 | 2331 | 100 | Plus |
| CG12857-PB | 293 | CG12857-PB | 1..277 | 1..277 | 1431 | 99.6 | Plus |
| CG30357-PA | 451 | CG30357-PA | 81..443 | 70..431 | 491 | 33.7 | Plus |
| CG9970-PA | 484 | CG9970-PA | 140..450 | 107..406 | 290 | 27.8 | Plus |
| CG10801-PA | 558 | CG10801-PA | 207..515 | 116..424 | 272 | 24.1 | Plus |
