Clone Sequence Records
BS13704.complete Sequence
1484 bp assembled on 2009-12-07
GenBank Submission: KX806534
> BS13704.complete
GAAGTTATCAGTCGACATGTTGCTCCAATTGAGGCGATTGGCGATCCTGT
TCCTGCTCCACGCTCTCATCCCCATCCTTGCGCTATCTGTTCCCATGGTG
GAGCAAGTGCAGCCGGCGGACGAGCTGCTATCGTCGCATTGGCTAAGACA
GGCGCAGTCTCAGTTGCGCGAACGTCTGGCCAGAACCAAGGACTCCATCG
CCGACGTCCGACAGGCCAAGAATGTGGTGATGCTCCTGGGCGATGGACTG
TCCATCACCACCTTAACGGCCGCTCGCATCCTAAAGGGGCAACGTCGCGG
CGGACGCGGAGAGGATGCACAGCTGGCCGTGGAACAATTCCCCTTCAGCG
GACTGAGCAAGACATACTGCATCGACGAGCAGACACCGGACTCCGCCTGC
ACGGCCACCGCCTATTTCGGCGGTGTGAAGACGCACAGCGGCACAGTGGG
TCAGAGTGGCAGTGGTGAGCGCGTGGACTCCGTACTCCAGTGGGCACAGC
GAGCGGGCAAGGCCACGGGAGTGGTGACCACCACCCGTTTGACGGACGCC
AGTCCGGCTGGTGCCTACGCCCATGTGAGCAGGCGTGGCGAGGAGCTGGA
GATTGCGCGACAGCTGGTGGAGGAGGAGCCGGGACGGAATCTTAATGTCA
TCCTGGGCGGTGGTCTGGGAAAATTTGCCGATGAGCGACGGGATGGCAAG
GATCTGCTGGCTCAGTGGCGTGAATCGAATCCCAATGGCTGCTTCTCGCG
ATCCCTGAAAGAGCTGAGGAACTGCACCGATGCTACCGGTACACTGCTGG
GTATCTTCAGCGACAGCCACATGTCATATCACTTGGCCGCCAGCAAGGAG
CTGCCGCGACTCTGCGACATGGCAGCGGCGGCCATTGAAAAACTGGAGAG
AAAGTCTCAGGAGGATGGGAATGGTTACTTCGTGTTCATTGAGGGCGGAC
GGATTGATCATGGACACCACGAAACCCGGGTGGGCTACGCCCTCGATGAG
ATGGTCGAGTTCGATGCGGCTGTGGAGACGGTGATCCAGATGACCGATCC
GCGCGATACTCTGGTAGTGGTCACCGCCGATCATTCGCATACGCTTAGCA
TGTCGGGATACGCGAAGCGGGGCACACCCATCCTGGGCATGGATGCACAG
CAGCGGGATGTGAACGGGGTGCCATACAGCACCCTCAACTATGCCATCGG
CAAGTGGCAGAGTCTGGACAAGGATGGACGTCGGGAGAGTCCCAGCAAGA
CATTGAGTCCCACATCCTACACACCCAGCTATATTCATGGAAGAAAGGGC
GTGCATTCTGGCGAGGATGTGGTCGTGTTTGCAATGGGCCCGCAGTCGCA
TCTGTTCGGTGGCGTCATGGAGCAGAATCTGCTGCCCCATATAATGGGCT
ATGCCGCCTGTCTGGGCAATGGCCTCACTCTCTGCAACCAGGACAAGGAT
GCGGATATGATTGCCTGAAAGCTTTCTAGACCAT
BS13704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-RA | 1452 | CG8105-PA | 1..1452 | 17..1468 | 7245 | 99.9 | Plus |
| CG3292-RA | 1632 | CG3292-PA | 400..494 | 338..432 | 190 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-RA | 1569 | CG8105-RA | 50..1508 | 10..1468 | 7250 | 99.8 | Plus |
| CG3292-RA | 1713 | CG3292-RA | 443..537 | 338..432 | 190 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15587782..15589034 | 10..1262 | 6220 | 99.8 | Plus |
| X | 23542271 | X | 15589099..15589304 | 1263..1468 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:51:17 has no hits.
BS13704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:14 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 62..1507 | 22..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:37 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 62..1507 | 22..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:10 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 62..1507 | 22..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:23 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 62..1507 | 22..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:23 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15587794..15589034 | 22..1262 | 99 | -> | Plus |
| X | 15589099..15589303 | 1263..1467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:37 Download gff for
BS13704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15481827..15483067 | 22..1262 | 99 | -> | Plus |
| arm_X | 15483132..15483336 | 1263..1467 | 100 | | Plus |
BS13704.3prime Sequence
676 bp (619 high quality bases) assembled on 2006-10-13
> BS13704.3prime
ATGGTCTAGAAAGCTTTCAGGCAATCATATCCGCATCCTTGTCCTGGTTG
CAGAGAGTGAGGCCATTGCCCAGACAGGCGGCATAGCCCATTATATGGGG
CAGCAGATTCTGCTCCATGACGCCACCGAACAGATGCGACTGCGGGCCCA
TTGCAAACACGACCACATCCTCGCCAGAATGCACGCCCTTTCTTCCATGA
ATATAGCTGGGTGTGTAGGATGTGGGACTCAATGTCTTGCTGGGACTCTC
CCGACGTCCATCCTTGTCCAGACTCTGCCACTTGCCGATGGCATAGTTGA
GGGTGCTGTATGGCACCCCGTTCACATCCCGCTGCTGTGCATCCATGCCC
AGGATGGGTGTGCCCCGCTTCGCGTATCCCGACATGCTAAGCGTATGCGA
ATGATCGGCGGTGACCACTACCAGAGTATCGCGCGGATCGGTCATCTGGA
TCACCGTCTCCACAGCCGCATCGAACTCGACCATCTCATCGAGGGCGTAG
CCCACCCGGGTTTCGTGGTGTCCATGATCAATCCGTCCGCCCTCAATGAA
CACGAAGTAACCATTCCCATCCTCCTGAGACTTTCTCTCCAGTTTTTCAA
TGGCCGCCGCTGCCATGTCGCAGAGTCGCGGCAGCTCCTTGCTGGCGGCC
AAGTGATATGACATGTGGCTGTCGCT
BS13704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-PA | 1452 | CG8105-RA | 793..1452 | 676..17 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-RA | 1569 | CG8105-RA | 849..1508 | 676..17 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15588581..15589034 | 676..223 | 2270 | 100 | Minus |
| X | 23542271 | X | 15589099..15589304 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:51:14 has no hits.
BS13704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:01 Download gff for
BS13704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-PA | 793..1452 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:10 Download gff for
BS13704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 849..1511 | 10..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:06 Download gff for
BS13704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 849..1511 | 10..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:06 Download gff for
BS13704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15589099..15589307 | 10..222 | 98 | | Minus |
| X | 15588581..15589034 | 223..676 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:10 Download gff for
BS13704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15482614..15483067 | 223..676 | 100 | -> | Minus |
| arm_X | 15483132..15483340 | 10..222 | 98 | | Minus |
BS13704.5prime Sequence
771 bp (641 high quality bases) assembled on 2006-10-13
> BS13704.5prime
GAAGTTATCAGTCGACATGTTGCTCCAATTGAGGCGATTGGCGATCCTGT
TCCTGCTCCACGCTCTCATCCCCATCCTTGCGCTATCTGTTCCCATGGTG
GAGCAAGTGCAGCCGGCGGACGAGCTGCTATCGTCGCATTGGCTAAGACA
GGCGCAGTCTCAGTTGCGCGAACGTCTGGCCAGAACCAAGGACTCCATCG
CCGACGTCCGACAGGCCAAGAATGTGGTGATGCTCCTGGGCGATGGACTG
TCCATCACCACCTTAACGGCCGCTCGCATCCTAAAGGGGCAACGTCGCGG
CGGACGCGGAGAGGATGCACAGCTGGCCGTGGAACAATTCCCCTTCAGCG
GACTGAGCAAGACATACTGCATCGACGAGCAGACACCGGACTCCGCCTGC
ACGGCCACCGCCTATTTCGGCGGTGTGAAGACGCACAGCGGCACAGTGGG
TCAGAGTGGCAGTGGTGAGCGCGTGGACTCCGTACTCCAGTGGGCACAGC
GAGCGGGCAAGGCCACGGGAGTGGTGACCACCACCCGTTTGACGGACGCC
AGTCCGGCTGGTGCCTACGCCCATGTGAGCAGGCGTGGCGAGGAGCTGGA
GATTGCGCGACAGCTGGTGGAGGAGGAGCCGGGACGGAATCTTAATGTCA
TCCTGGGCGGTGGTCTGGGAAATTTGCCGATGAGCGACGGGATGGCAAGG
ATCTGCTGGCTCAGTGGCGTGAATCGAATCCCAATGGCTGCTTCTCGCGA
TCCCTGAAAGAGCTGAGGAAC
BS13704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-PA | 1452 | CG8105-RA | 1..756 | 17..771 | 3715 | 99.7 | Plus |
| CG1809-PA | 1548 | CG1809-RA | 379..411 | 398..430 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-RA | 1569 | CG8105-RA | 50..812 | 10..771 | 3745 | 99.5 | Plus |
| CG3292-RA | 1713 | CG3292-RA | 443..537 | 338..432 | 190 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15587782..15588544 | 10..771 | 3720 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:52:25 has no hits.
BS13704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:02 Download gff for
BS13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-PA | 1..756 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:05 Download gff for
BS13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 50..812 | 10..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:47 Download gff for
BS13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 50..812 | 10..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:47 Download gff for
BS13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15587782..15588544 | 10..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:05 Download gff for
BS13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15481815..15482577 | 10..771 | 99 | | Plus |
BS13704.pep Sequence
Translation from 16 to 1467
> BS13704.pep
MLLQLRRLAILFLLHALIPILALSVPMVEQVQPADELLSSHWLRQAQSQL
RERLARTKDSIADVRQAKNVVMLLGDGLSITTLTAARILKGQRRGGRGED
AQLAVEQFPFSGLSKTYCIDEQTPDSACTATAYFGGVKTHSGTVGQSGSG
ERVDSVLQWAQRAGKATGVVTTTRLTDASPAGAYAHVSRRGEELEIARQL
VEEEPGRNLNVILGGGLGKFADERRDGKDLLAQWRESNPNGCFSRSLKEL
RNCTDATGTLLGIFSDSHMSYHLAASKELPRLCDMAAAAIEKLERKSQED
GNGYFVFIEGGRIDHGHHETRVGYALDEMVEFDAAVETVIQMTDPRDTLV
VVTADHSHTLSMSGYAKRGTPILGMDAQQRDVNGVPYSTLNYAIGKWQSL
DKDGRRESPSKTLSPTSYTPSYIHGRKGVHSGEDVVVFAMGPQSHLFGGV
MEQNLLPHIMGYAACLGNGLTLCNQDKDADMIA*
BS13704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-PA | 483 | CG8105-PA | 1..483 | 1..483 | 2490 | 100 | Plus |
| CG3264-PB | 533 | CG3264-PB | 52..532 | 29..474 | 1032 | 44.6 | Plus |
| CG3264-PA | 533 | CG3264-PA | 52..532 | 29..474 | 1032 | 44.6 | Plus |
| CG3292-PA | 543 | CG3292-PA | 62..542 | 33..476 | 1021 | 45.1 | Plus |
| CG3290-PA | 538 | CG3290-PA | 57..531 | 33..473 | 1020 | 44.8 | Plus |
