Clone BS13705 Report

Search the DGRC for BS13705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG33129-RE
Protein status:BS13705.pep: full length peptide match
Sequenced Size:2066

Clone Sequence Records

BS13705.complete Sequence

2066 bp assembled on 2009-12-07

GenBank Submission: KX806039

> BS13705.complete
GAAGTTATCAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGC
GCAAGCAAAAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAG
CGCATCGCGGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCG
GTATCGCAATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATT
CCCCTGCGAAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAG
TCGCCAGTTAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGAC
CACGTCGGCAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGA
ACATCACCCGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGT
TGTCCTGGCTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAA
TGAAGCCTTGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTC
AGTATCCCAGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAG
TTTCTGGGCAGTGTGGGCGAGCAAAACCTGGAGTATTTCTTCTACTCCCT
GCTGGATAGCATGTCAACGGATCTAAACAACAATCAGACAGTGGCAGGTT
ACAAGCTCATCCTACAGTTGATCGGTCAAAACTGGCCGAACATTTGTTCT
AGGAACCTGGCCAAGACTGCGTTGCTAAGGAACTCCTATCAGAACCGTAG
CAACATCTGCCTGAGCATCCTGTGGGCAATTGGACAAGGTGGCTATCAGT
CCCTAAACGAGGGCGTTCGCGTGTGGCAGAACCTGATGCTGCCCAACCTG
GAGCTAAAGCAGTACACCAAGTTTGTGGTCGAGTATATGGAGCGGGCTCT
GAGTGCAGCAGCTGTCCGGAAGACGGCGGATCCTCTGCAGATCAACCAGC
AGGAGTTCTTTGCCACTTACAATGCGCTCAATGCACCCTATAACCACCTG
CCCAAGGAATGGCAGCAAAGTCTGAAGCGTAGTGCGCGTTTGTTGCTTCA
ACACTATATCAACAGTCCTGTGAGGCATGCCAACATATTCCTTACGCTCT
TCCGGGAAATAAGCGCCGGATCCAAGCAAACTAATGAGATCGAAGGCTGT
ATTAGTTGTCTGCTCAGCAGCGGCAGAGATGATTGCCTCAGGGTGTGGCG
CATGAACTACAAGAAGCAACAGTTGCCTAGTCTACTGCTTCTGAAAGCTA
TAAACGACAATTGGACCACGTCTACCCATGAGTTGGCTACGTCGACTGTG
TATCACTCTTTTCTGCAAGATGTGGCGAATCTGAACGAAGAACTGCAGGG
AAGCAAGAGAAACGAAGGTCACCTAGATGATTTAAAGGAGGTTTTGTTGA
GCGTCCAAGAGAAGAGCAGCGCGCAGCAGAAGAAGAACAAACAGAAGGCC
GCGGCAGAAAAAAAGAAATGCGGATGCTGCAAGTGGACCTTGGGTAGCAT
CTTCATCATCGCCCTGATTGCCGGAGCTCTGTACTACGATACCGAGGTGA
ACGGCAAGGGCGTGTTCGAGAAATCGGCCACCGGCAAGGTGCTGAAAAAT
GCCGGAGTCCTGCCGCATGTCCAGAAGTCCTGGTACACGGTCATGGGGGC
CGGAGCGCGGGGCTACAAGTGGGCGGAAGTGAATGTGCCGCCGTACGCCG
AGCCGGTGATCAAGACCACCTGTGACCTGTGGAAGCTGGCGAGGAATGCG
GCCTGCAACGCTTACCAGAACGGCAAGGGATACTTTGGCGCCAAATGGCC
CGTTGTGGCAAAGTTCATTGACCAATACGTGCCCAATTCGTCTGGCAAAA
TCGAAGCTTTTGCCGCTGGCGTTAGCGATTTAGCCGCCAGCAGCTATGAA
AAGGCTGCAGCGCTCATCAAGGAAAAGGTGCTTGTTGGCCGTCTCTCGCC
CGAGAACATCAATCAGGCGCTGAACCAGACGCGTAACGCCGCCCTGGAGT
ACTACAACCAGTTTCACAAAAAGGTCGACGCATACGCCAAGCTCAAATGA
AAGCTTTCTAGACCAT

BS13705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RF 2034 CG33129-PF 1..2034 17..2050 10095 99.8 Plus
CG33129-RE 2034 CG33129-PE 1..2034 17..2050 10095 99.8 Plus
CG33129-RH 714 CG33129-PH 63..714 1399..2050 3260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RF 2815 CG33129-RF 80..2115 15..2050 10105 99.8 Plus
CG33129-RE 2652 CG33129-RE 152..2187 15..2050 10105 99.8 Plus
CG33129-RH 1661 CG33129-RH 310..961 1399..2050 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10968962..10969580 1048..430 3035 99.4 Minus
2L 23513712 2L 10965993..10966414 1816..1395 2095 99.8 Minus
2L 23513712 2L 10969633..10969928 433..138 1465 99.7 Minus
2L 23513712 2L 10968692..10968896 1253..1049 1010 99.5 Minus
2L 23513712 2L 10968438..10968583 1399..1254 730 100 Minus
2L 23513712 2L 10970002..10970124 137..15 615 100 Minus
2L 23513712 2L 10965792..10965910 1935..1817 595 100 Minus
2L 23513712 2L 10965605..10965719 2050..1936 575 100 Minus
Blast to na_te.dros performed 2014-11-28 02:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6801 112..191 123 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6959 166..257 119 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6780 88..191 116 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2295..2329 156..191 114 83.3 Plus

BS13705.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:16 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 154..2186 17..2049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:32 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 154..2186 17..2049 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:59 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 154..2186 17..2049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:28 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 154..2186 17..2049 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:28 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10965606..10965719 1936..2049 100 <- Minus
2L 10965792..10965910 1817..1935 100 <- Minus
2L 10965993..10966409 1400..1816 100 <- Minus
2L 10968438..10968583 1254..1399 100 <- Minus
2L 10968692..10968896 1049..1253 99 <- Minus
2L 10968962..10969576 434..1048 99 <- Minus
2L 10969633..10969928 138..433 99 <- Minus
2L 10970002..10970122 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:32 Download gff for BS13705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10965606..10965719 1936..2049 100 <- Minus
arm_2L 10965792..10965910 1817..1935 100 <- Minus
arm_2L 10965993..10966409 1400..1816 100 <- Minus
arm_2L 10968438..10968583 1254..1399 100 <- Minus
arm_2L 10968692..10968896 1049..1253 99 <- Minus
arm_2L 10968962..10969576 434..1048 99 <- Minus
arm_2L 10969633..10969928 138..433 99 <- Minus
arm_2L 10970002..10970122 17..137 100   Minus

BS13705.3prime Sequence

621 bp (521 high quality bases) assembled on 2006-10-13

> BS13705.3prime
ATGGTCTAGAAAGCTTTCATTTGAGCTTGGCGTATGCGTCGACCTTTTTG
TGAAACTGGTTGTAGTACTCCAGGGCGGCGTTACGCGTCTGGTTCAGCGC
CTGATTGATGTTCTCGGGCGAGAGACGGCCAACAAGCACCTTTTCCTTGA
TGAGCGCTGCAGCCTTTTCATAGCTGCTGGCGGCTAAATCGCTAACGCCA
GCGGCAAAAGCTTCGATTTTGCCAGACGAATTGGGCACGTATTGGTCAAT
GAACTTTGCCACAACGGGCCATTTGGCGCCAAAGTATCCCTTGCCGTTCT
GGTAAGCGTTGCAGGCCGCATTCCTCGCCAGCTTCCACAGGTCACAGGTG
GTCTTGATCACCGGCTCGGCGTACGGCGGCACATTCACTTCCGCCCACTT
GTAGCCCCGCGCTCCGGCCCCCATGACCGTGTACCAGGACTTCTGGACAT
GCGGCAGGACTCCGGCATTTTTCAGCACCTTGCCGGTGGCCGATTTCTCG
AACACGCCCTTGCCGTTCACCTCGGTATCGTAGTACAGAGCTCCGGCAAT
CAGGGCGATGATGAAGATGCTACCCAAGGTCCACTTGCAGCATCCGCATT
TCTTTTTTTCTGGCGCGGCCC

BS13705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-PE 2034 CG33129-RE 1431..2034 620..17 2995 99.8 Minus
CG33129-PA 714 CG33129-RA 111..714 620..17 2995 99.8 Minus
CG33129-PB 714 CG33129-RB 111..714 620..17 2995 99.8 Minus
CG33129-PC 714 CG33129-RC 111..714 620..17 2995 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RH 1661 CG33129-RH 358..961 620..17 3005 99.8 Minus
CG33129-RG 1782 CG33129-RG 479..1082 620..17 3005 99.8 Minus
CG33129-RF 2815 CG33129-RF 1512..2115 620..17 3005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10965993..10966362 251..620 1835 99.7 Plus
2L 23513712 2L 10965792..10965910 132..250 595 100 Plus
2L 23513712 2L 10965605..10965719 17..131 575 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:59:26 has no hits.

BS13705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:02 Download gff for BS13705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-PC 110..714 17..621 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:17 Download gff for BS13705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RF 1511..2118 10..621 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:04 Download gff for BS13705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RF 1511..2118 10..621 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:04 Download gff for BS13705.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10965601..10965719 10..131 96 <- Plus
2L 10965792..10965910 132..250 100 <- Plus
2L 10965993..10966362 251..621 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:17 Download gff for BS13705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10965601..10965719 10..131 96 <- Plus
arm_2L 10965792..10965910 132..250 100 <- Plus
arm_2L 10965993..10966362 251..621 99   Plus

BS13705.5prime Sequence

645 bp (568 high quality bases) assembled on 2006-10-13

> BS13705.5prime
GAAGTTATCAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGC
GCAAGCAAAAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAG
CGCATCGCGGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCG
GTATCGCAATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATT
CCCCTGCGAAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAG
TCGCCAGTTAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGAC
CACGTCGGCAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGA
ACATCACCCGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGT
TGTCCTGGCTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAA
TGAAGCCTTGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTC
AGTATCCCAGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAG
TTTCTGGGCAGTGTGAGCGAGCAAAACTGGAGTATTTCTTCTACTCCCTG
CTGGATAGCATGTCAACGGATCTAAACAACAATCAGACAGTGGCA

BS13705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-PE 2034 CG33129-RE 1..630 17..645 3035 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RF 2815 CG33129-RF 80..711 15..645 3090 99.4 Plus
CG33129-RE 2652 CG33129-RE 152..783 15..645 3090 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10969633..10969928 433..138 1465 99.7 Minus
2L 23513712 2L 10969364..10969580 645..430 990 98.2 Minus
2L 23513712 2L 10970002..10970124 137..15 615 100 Minus
Blast to na_te.dros performed 2015-02-13 06:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6801 112..191 123 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6959 166..257 119 65.6 Plus
roo 9092 roo DM_ROO 9092bp 1048..1161 74..191 119 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6780 88..191 116 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2295..2329 156..191 114 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1582 166..191 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6759 166..191 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2447 166..263 110 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2430..2482 140..191 109 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1561 165..191 108 88.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3271..3373 143..248 108 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2431 166..188 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2830 169..191 106 95.7 Plus

BS13705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:03 Download gff for BS13705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-PE 1..629 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:39:54 Download gff for BS13705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 147..782 8..644 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:53 Download gff for BS13705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 147..782 8..644 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:53 Download gff for BS13705.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10969633..10969928 138..433 99 <- Minus
2L 10970002..10970129 8..137 97   Minus
2L 10969365..10969576 434..644 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:39:54 Download gff for BS13705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10969365..10969576 434..644 98 <- Minus
arm_2L 10969633..10969928 138..433 99 <- Minus
arm_2L 10970002..10970129 8..137 97   Minus

BS13705.pep Sequence

Translation from 16 to 2049

> BS13705.pep
MSEQWEVVSKSRKQKNLDKKVSAHNEQKRIAAQLPKLEELLPTQRYRNLF
GSSNNNNSKSHSPAKSSSSASSSSKANKSPVKKHTAKNASTQKRTTSAAA
SKPKTLELALRNITRDDFAAQLEQVKLSCPGSELRWLSHIALYFNEALSY
DCDPIFSGRSAQYPSNLASASLKYSIVEFLGSVGEQNLEYFFYSLLDSMS
TDLNNNQTVAGYKLILQLIGQNWPNICSRNLAKTALLRNSYQNRSNICLS
ILWAIGQGGYQSLNEGVRVWQNLMLPNLELKQYTKFVVEYMERALSAAAV
RKTADPLQINQQEFFATYNALNAPYNHLPKEWQQSLKRSARLLLQHYINS
PVRHANIFLTLFREISAGSKQTNEIEGCISCLLSSGRDDCLRVWRMNYKK
QQLPSLLLLKAINDNWTTSTHELATSTVYHSFLQDVANLNEELQGSKRNE
GHLDDLKEVLLSVQEKSSAQQKKNKQKAAAEKKKCGCCKWTLGSIFIIAL
IAGALYYDTEVNGKGVFEKSATGKVLKNAGVLPHVQKSWYTVMGAGARGY
KWAEVNVPPYAEPVIKTTCDLWKLARNAACNAYQNGKGYFGAKWPVVAKF
IDQYVPNSSGKIEAFAAGVSDLAASSYEKAAALIKEKVLVGRLSPENINQ
ALNQTRNAALEYYNQFHKKVDAYAKLK*

BS13705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-PF 677 CG33129-PF 1..677 1..677 3498 100 Plus
CG33129-PE 677 CG33129-PE 1..677 1..677 3498 100 Plus
CG33129-PH 237 CG33129-PH 22..237 462..677 1130 100 Plus
CG33129-PG 237 CG33129-PG 22..237 462..677 1130 100 Plus
CG33129-PC 237 CG33129-PC 22..237 462..677 1130 100 Plus