Clone Sequence Records
BS13705.complete Sequence
2066 bp assembled on 2009-12-07
GenBank Submission: KX806039
> BS13705.complete
GAAGTTATCAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGC
GCAAGCAAAAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAG
CGCATCGCGGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCG
GTATCGCAATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATT
CCCCTGCGAAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAG
TCGCCAGTTAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGAC
CACGTCGGCAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGA
ACATCACCCGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGT
TGTCCTGGCTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAA
TGAAGCCTTGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTC
AGTATCCCAGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAG
TTTCTGGGCAGTGTGGGCGAGCAAAACCTGGAGTATTTCTTCTACTCCCT
GCTGGATAGCATGTCAACGGATCTAAACAACAATCAGACAGTGGCAGGTT
ACAAGCTCATCCTACAGTTGATCGGTCAAAACTGGCCGAACATTTGTTCT
AGGAACCTGGCCAAGACTGCGTTGCTAAGGAACTCCTATCAGAACCGTAG
CAACATCTGCCTGAGCATCCTGTGGGCAATTGGACAAGGTGGCTATCAGT
CCCTAAACGAGGGCGTTCGCGTGTGGCAGAACCTGATGCTGCCCAACCTG
GAGCTAAAGCAGTACACCAAGTTTGTGGTCGAGTATATGGAGCGGGCTCT
GAGTGCAGCAGCTGTCCGGAAGACGGCGGATCCTCTGCAGATCAACCAGC
AGGAGTTCTTTGCCACTTACAATGCGCTCAATGCACCCTATAACCACCTG
CCCAAGGAATGGCAGCAAAGTCTGAAGCGTAGTGCGCGTTTGTTGCTTCA
ACACTATATCAACAGTCCTGTGAGGCATGCCAACATATTCCTTACGCTCT
TCCGGGAAATAAGCGCCGGATCCAAGCAAACTAATGAGATCGAAGGCTGT
ATTAGTTGTCTGCTCAGCAGCGGCAGAGATGATTGCCTCAGGGTGTGGCG
CATGAACTACAAGAAGCAACAGTTGCCTAGTCTACTGCTTCTGAAAGCTA
TAAACGACAATTGGACCACGTCTACCCATGAGTTGGCTACGTCGACTGTG
TATCACTCTTTTCTGCAAGATGTGGCGAATCTGAACGAAGAACTGCAGGG
AAGCAAGAGAAACGAAGGTCACCTAGATGATTTAAAGGAGGTTTTGTTGA
GCGTCCAAGAGAAGAGCAGCGCGCAGCAGAAGAAGAACAAACAGAAGGCC
GCGGCAGAAAAAAAGAAATGCGGATGCTGCAAGTGGACCTTGGGTAGCAT
CTTCATCATCGCCCTGATTGCCGGAGCTCTGTACTACGATACCGAGGTGA
ACGGCAAGGGCGTGTTCGAGAAATCGGCCACCGGCAAGGTGCTGAAAAAT
GCCGGAGTCCTGCCGCATGTCCAGAAGTCCTGGTACACGGTCATGGGGGC
CGGAGCGCGGGGCTACAAGTGGGCGGAAGTGAATGTGCCGCCGTACGCCG
AGCCGGTGATCAAGACCACCTGTGACCTGTGGAAGCTGGCGAGGAATGCG
GCCTGCAACGCTTACCAGAACGGCAAGGGATACTTTGGCGCCAAATGGCC
CGTTGTGGCAAAGTTCATTGACCAATACGTGCCCAATTCGTCTGGCAAAA
TCGAAGCTTTTGCCGCTGGCGTTAGCGATTTAGCCGCCAGCAGCTATGAA
AAGGCTGCAGCGCTCATCAAGGAAAAGGTGCTTGTTGGCCGTCTCTCGCC
CGAGAACATCAATCAGGCGCTGAACCAGACGCGTAACGCCGCCCTGGAGT
ACTACAACCAGTTTCACAAAAAGGTCGACGCATACGCCAAGCTCAAATGA
AAGCTTTCTAGACCAT
BS13705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-RF | 2034 | CG33129-PF | 1..2034 | 17..2050 | 10095 | 99.8 | Plus |
CG33129-RE | 2034 | CG33129-PE | 1..2034 | 17..2050 | 10095 | 99.8 | Plus |
CG33129-RH | 714 | CG33129-PH | 63..714 | 1399..2050 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-RF | 2815 | CG33129-RF | 80..2115 | 15..2050 | 10105 | 99.8 | Plus |
CG33129-RE | 2652 | CG33129-RE | 152..2187 | 15..2050 | 10105 | 99.8 | Plus |
CG33129-RH | 1661 | CG33129-RH | 310..961 | 1399..2050 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10968962..10969580 | 1048..430 | 3035 | 99.4 | Minus |
2L | 23513712 | 2L | 10965993..10966414 | 1816..1395 | 2095 | 99.8 | Minus |
2L | 23513712 | 2L | 10969633..10969928 | 433..138 | 1465 | 99.7 | Minus |
2L | 23513712 | 2L | 10968692..10968896 | 1253..1049 | 1010 | 99.5 | Minus |
2L | 23513712 | 2L | 10968438..10968583 | 1399..1254 | 730 | 100 | Minus |
2L | 23513712 | 2L | 10970002..10970124 | 137..15 | 615 | 100 | Minus |
2L | 23513712 | 2L | 10965792..10965910 | 1935..1817 | 595 | 100 | Minus |
2L | 23513712 | 2L | 10965605..10965719 | 2050..1936 | 575 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6801 | 112..191 | 123 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6959 | 166..257 | 119 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6780 | 88..191 | 116 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2329 | 156..191 | 114 | 83.3 | Plus |
BS13705.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:16 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 154..2186 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:32 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 154..2186 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:59 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 154..2186 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:28 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 154..2186 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:28 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10965606..10965719 | 1936..2049 | 100 | <- | Minus |
2L | 10965792..10965910 | 1817..1935 | 100 | <- | Minus |
2L | 10965993..10966409 | 1400..1816 | 100 | <- | Minus |
2L | 10968438..10968583 | 1254..1399 | 100 | <- | Minus |
2L | 10968692..10968896 | 1049..1253 | 99 | <- | Minus |
2L | 10968962..10969576 | 434..1048 | 99 | <- | Minus |
2L | 10969633..10969928 | 138..433 | 99 | <- | Minus |
2L | 10970002..10970122 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:32 Download gff for
BS13705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10965606..10965719 | 1936..2049 | 100 | <- | Minus |
arm_2L | 10965792..10965910 | 1817..1935 | 100 | <- | Minus |
arm_2L | 10965993..10966409 | 1400..1816 | 100 | <- | Minus |
arm_2L | 10968438..10968583 | 1254..1399 | 100 | <- | Minus |
arm_2L | 10968692..10968896 | 1049..1253 | 99 | <- | Minus |
arm_2L | 10968962..10969576 | 434..1048 | 99 | <- | Minus |
arm_2L | 10969633..10969928 | 138..433 | 99 | <- | Minus |
arm_2L | 10970002..10970122 | 17..137 | 100 | | Minus |
BS13705.3prime Sequence
621 bp (521 high quality bases) assembled on 2006-10-13
> BS13705.3prime
ATGGTCTAGAAAGCTTTCATTTGAGCTTGGCGTATGCGTCGACCTTTTTG
TGAAACTGGTTGTAGTACTCCAGGGCGGCGTTACGCGTCTGGTTCAGCGC
CTGATTGATGTTCTCGGGCGAGAGACGGCCAACAAGCACCTTTTCCTTGA
TGAGCGCTGCAGCCTTTTCATAGCTGCTGGCGGCTAAATCGCTAACGCCA
GCGGCAAAAGCTTCGATTTTGCCAGACGAATTGGGCACGTATTGGTCAAT
GAACTTTGCCACAACGGGCCATTTGGCGCCAAAGTATCCCTTGCCGTTCT
GGTAAGCGTTGCAGGCCGCATTCCTCGCCAGCTTCCACAGGTCACAGGTG
GTCTTGATCACCGGCTCGGCGTACGGCGGCACATTCACTTCCGCCCACTT
GTAGCCCCGCGCTCCGGCCCCCATGACCGTGTACCAGGACTTCTGGACAT
GCGGCAGGACTCCGGCATTTTTCAGCACCTTGCCGGTGGCCGATTTCTCG
AACACGCCCTTGCCGTTCACCTCGGTATCGTAGTACAGAGCTCCGGCAAT
CAGGGCGATGATGAAGATGCTACCCAAGGTCCACTTGCAGCATCCGCATT
TCTTTTTTTCTGGCGCGGCCC
BS13705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-PE | 2034 | CG33129-RE | 1431..2034 | 620..17 | 2995 | 99.8 | Minus |
CG33129-PA | 714 | CG33129-RA | 111..714 | 620..17 | 2995 | 99.8 | Minus |
CG33129-PB | 714 | CG33129-RB | 111..714 | 620..17 | 2995 | 99.8 | Minus |
CG33129-PC | 714 | CG33129-RC | 111..714 | 620..17 | 2995 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-RH | 1661 | CG33129-RH | 358..961 | 620..17 | 3005 | 99.8 | Minus |
CG33129-RG | 1782 | CG33129-RG | 479..1082 | 620..17 | 3005 | 99.8 | Minus |
CG33129-RF | 2815 | CG33129-RF | 1512..2115 | 620..17 | 3005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10965993..10966362 | 251..620 | 1835 | 99.7 | Plus |
2L | 23513712 | 2L | 10965792..10965910 | 132..250 | 595 | 100 | Plus |
2L | 23513712 | 2L | 10965605..10965719 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:59:26 has no hits.
BS13705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:02 Download gff for
BS13705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-PC | 110..714 | 17..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:17 Download gff for
BS13705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RF | 1511..2118 | 10..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:04 Download gff for
BS13705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RF | 1511..2118 | 10..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:04 Download gff for
BS13705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10965601..10965719 | 10..131 | 96 | <- | Plus |
2L | 10965792..10965910 | 132..250 | 100 | <- | Plus |
2L | 10965993..10966362 | 251..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:17 Download gff for
BS13705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10965601..10965719 | 10..131 | 96 | <- | Plus |
arm_2L | 10965792..10965910 | 132..250 | 100 | <- | Plus |
arm_2L | 10965993..10966362 | 251..621 | 99 | | Plus |
BS13705.5prime Sequence
645 bp (568 high quality bases) assembled on 2006-10-13
> BS13705.5prime
GAAGTTATCAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGC
GCAAGCAAAAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAG
CGCATCGCGGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCG
GTATCGCAATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATT
CCCCTGCGAAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAG
TCGCCAGTTAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGAC
CACGTCGGCAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGA
ACATCACCCGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGT
TGTCCTGGCTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAA
TGAAGCCTTGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTC
AGTATCCCAGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAG
TTTCTGGGCAGTGTGAGCGAGCAAAACTGGAGTATTTCTTCTACTCCCTG
CTGGATAGCATGTCAACGGATCTAAACAACAATCAGACAGTGGCA
BS13705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-PE | 2034 | CG33129-RE | 1..630 | 17..645 | 3035 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-RF | 2815 | CG33129-RF | 80..711 | 15..645 | 3090 | 99.4 | Plus |
CG33129-RE | 2652 | CG33129-RE | 152..783 | 15..645 | 3090 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10969633..10969928 | 433..138 | 1465 | 99.7 | Minus |
2L | 23513712 | 2L | 10969364..10969580 | 645..430 | 990 | 98.2 | Minus |
2L | 23513712 | 2L | 10970002..10970124 | 137..15 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6801 | 112..191 | 123 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6959 | 166..257 | 119 | 65.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 74..191 | 119 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6780 | 88..191 | 116 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2329 | 156..191 | 114 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1582 | 166..191 | 112 | 92.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6759 | 166..191 | 112 | 92.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2447 | 166..263 | 110 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2482 | 140..191 | 109 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1561 | 165..191 | 108 | 88.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3271..3373 | 143..248 | 108 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2431 | 166..188 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2830 | 169..191 | 106 | 95.7 | Plus |
BS13705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:03 Download gff for
BS13705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-PE | 1..629 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:39:54 Download gff for
BS13705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 147..782 | 8..644 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:53 Download gff for
BS13705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33129-RE | 147..782 | 8..644 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:53 Download gff for
BS13705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10969633..10969928 | 138..433 | 99 | <- | Minus |
2L | 10970002..10970129 | 8..137 | 97 | | Minus |
2L | 10969365..10969576 | 434..644 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:39:54 Download gff for
BS13705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10969365..10969576 | 434..644 | 98 | <- | Minus |
arm_2L | 10969633..10969928 | 138..433 | 99 | <- | Minus |
arm_2L | 10970002..10970129 | 8..137 | 97 | | Minus |
BS13705.pep Sequence
Translation from 16 to 2049
> BS13705.pep
MSEQWEVVSKSRKQKNLDKKVSAHNEQKRIAAQLPKLEELLPTQRYRNLF
GSSNNNNSKSHSPAKSSSSASSSSKANKSPVKKHTAKNASTQKRTTSAAA
SKPKTLELALRNITRDDFAAQLEQVKLSCPGSELRWLSHIALYFNEALSY
DCDPIFSGRSAQYPSNLASASLKYSIVEFLGSVGEQNLEYFFYSLLDSMS
TDLNNNQTVAGYKLILQLIGQNWPNICSRNLAKTALLRNSYQNRSNICLS
ILWAIGQGGYQSLNEGVRVWQNLMLPNLELKQYTKFVVEYMERALSAAAV
RKTADPLQINQQEFFATYNALNAPYNHLPKEWQQSLKRSARLLLQHYINS
PVRHANIFLTLFREISAGSKQTNEIEGCISCLLSSGRDDCLRVWRMNYKK
QQLPSLLLLKAINDNWTTSTHELATSTVYHSFLQDVANLNEELQGSKRNE
GHLDDLKEVLLSVQEKSSAQQKKNKQKAAAEKKKCGCCKWTLGSIFIIAL
IAGALYYDTEVNGKGVFEKSATGKVLKNAGVLPHVQKSWYTVMGAGARGY
KWAEVNVPPYAEPVIKTTCDLWKLARNAACNAYQNGKGYFGAKWPVVAKF
IDQYVPNSSGKIEAFAAGVSDLAASSYEKAAALIKEKVLVGRLSPENINQ
ALNQTRNAALEYYNQFHKKVDAYAKLK*
BS13705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33129-PF | 677 | CG33129-PF | 1..677 | 1..677 | 3498 | 100 | Plus |
CG33129-PE | 677 | CG33129-PE | 1..677 | 1..677 | 3498 | 100 | Plus |
CG33129-PH | 237 | CG33129-PH | 22..237 | 462..677 | 1130 | 100 | Plus |
CG33129-PG | 237 | CG33129-PG | 22..237 | 462..677 | 1130 | 100 | Plus |
CG33129-PC | 237 | CG33129-PC | 22..237 | 462..677 | 1130 | 100 | Plus |