Clone BS13706 Report

Search the DGRC for BS13706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG14689-RA
Protein status:BS13706.pep: full length peptide match
Sequenced Size:1496

Clone Sequence Records

BS13706.complete Sequence

1496 bp assembled on 2009-12-07

GenBank Submission: KX802844

> BS13706.complete
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAAC
CGTCTGTTTCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAG
CTTTACGCCGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCG
TTAACTATCGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTG
GCGGAGGAGGACATGCCCATCCTGTGGATTGGCGAGCGAAAGTACCGAGG
CAACGACAAGCGCATTGCCGAGATGGAGCTGGAGTACATTGTGCCGGGAC
CACAGCTGCGTATGATCGATGTGGCACACGGCATACTGGGACATCCGAAG
GATCTGTACAACACCATCCTAGACCTGGACTGGCCCACAGTTCGCTACTC
AAACTTTTCGCTTGGCTACGATCCGTACCACATCATTCGCCAGCCGCACT
TGGACATTCCCAAGATCGACGCCTTGAAAGCGCGCAAGATGAATGAAAAC
TACGAGCATTTCTACAAGGTGTATCGCATCTACGAGCCGCACAGCGTGCA
GATCCTGCAGAAGTGGCTCAAGCGGGACAAGCTCGTCCAGTTCTATCGCT
CCGGGGGACTGCTGCTCACCAACGTGGTATCCCGGTGCGAGAAGGAACTG
GCCGAAAAGGTACCGGTAACCAAGGTCGACCAGGTCATATCCAATTACTT
TAAGGTGAAGTCCAGGCTGCGCAAGGGATCTCCATATGAACCGGACAACG
TTAGCATCACCTCCTCGCGGATCGGGGGCTTCAATTCGCCGCGCCAAAAG
AAAACGCCACAGGAATACTATTTCGATTGAAAGCTTTCTAGACCAT

BS13706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-RA 1464 CG14689-PA 1..1464 17..1480 7320 100 Plus
CG31391-RA 1443 CG31391-PA 430..1050 440..1060 600 73.1 Plus
CG31391-RA 1443 CG31391-PA 1..193 17..209 470 82.9 Plus
CG31467-RA 1443 CG31467-PA 423..1050 433..1060 470 71.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-RA 1661 CG14689-RA 109..1573 16..1480 7325 100 Plus
CG31391-RA 1704 CG31391-RA 516..1136 440..1060 600 73.1 Plus
CG31391-RA 1704 CG31391-RA 87..279 17..209 470 82.9 Plus
CG31467-RA 1694 CG31467-RA 552..1179 433..1060 470 71.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10709676..10711140 1480..16 7325 100 Minus
3R 32079331 3R 10703940..10704560 1060..440 600 73.1 Minus
3R 32079331 3R 10704797..10704989 209..17 470 82.9 Minus
3R 32079331 3R 10705685..10706312 1060..433 470 71.7 Minus
3R 32079331 3R 10706542..10706722 209..29 395 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 01:53:27 has no hits.

BS13706.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:47 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 110..1572 17..1479 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:38 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 110..1572 17..1479 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:52 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 110..1572 17..1479 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:16 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 110..1572 17..1479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:16 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10709677..10711139 17..1479 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:38 Download gff for BS13706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6535399..6536861 17..1479 100   Minus

BS13706.3prime Sequence

666 bp (546 high quality bases) assembled on 2006-10-13

> BS13706.3prime
ATGGTCTAGAAAGCTTTCAATCGAAATAGTATTCCTGTGGCGTTTTCTTT
TGGCGCGGCGAATTGAAGCCCCCGATCCGCGAGGAGGTGATGCTAACGTT
GTCCGGTTCATATGGAGATCCCTTGCGCAGCCTGGACTTCACCTTAAAGT
AATTGGATATGACCTGGTCGACCTTGGTTACCGGTACCTTTTCGGCCAGT
TCCTTCTCGCACCGGGATACCACGTTGGTGAGCAGCAGTCCCCCGGAGCG
ATAGAACTGGACGAGCTTGTCCCGCTTGAGCCACTTCTGCAGGATCTGCA
CGCTGTGCGGCTCGTAGATGCGATACACCTTGTAGAAATGCTCGTAGTTT
TCATTCATCTTGCGCGCTTTCAAGGCGTCGATCTTGGGAATGTCCAAGTG
CGGCTGGCGAATGATGTGGTACGGATCGTAGCCAAGCGAAAAGTTTGAGT
AGCGAACTGTGGGCCAGTCCAGGTCTAGGATGGTGTTGTACAGATCCTTC
GGATGTCCCAGTATGCCGTGTGCCACATCGATCATACGCAGCTGTGGTCC
CGGCACAATGTACTCCAGCTCCATCTCGGCAATGCGCTTGTCGTTGCCTC
GGTACTTTCGCTCGCCCAATCACAGGATGGGCATGTCCTCCTCCGCCACG
TGCTCCAACTCCTGAA

BS13706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-PA 1464 CG14689-RA 817..1464 664..17 3165 99.5 Minus
CG31467-PA 1443 CG31467-RA 901..935 586..552 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-RA 1661 CG14689-RA 926..1573 664..17 3195 99.7 Minus
CG31467-RA 1694 CG31467-RA 976..1179 640..437 285 76.6 Minus
CG31391-RA 1704 CG31391-RA 912..1136 661..437 270 74.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10709676..10710323 17..664 3195 99.5 Plus
3R 32079331 3R 10703940..10704164 437..661 270 74.7 Plus
3R 32079331 3R 10705685..10705888 437..640 270 75.5 Plus
Blast to na_te.dros performed on 2015-02-12 11:51:24 has no hits.

BS13706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:03 Download gff for BS13706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-PA 817..1464 17..664 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:13 Download gff for BS13706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 924..1576 10..666 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:32 Download gff for BS13706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 924..1576 10..666 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:32 Download gff for BS13706.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10709673..10710325 10..666 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:13 Download gff for BS13706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6535395..6536047 10..666 98   Plus

BS13706.5prime Sequence

722 bp (586 high quality bases) assembled on 2006-10-13

> BS13706.5prime
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGAAAATGAAC
GGTCTGTTTCGTTCCGATCACT

BS13706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-PA 1464 CG14689-RA 1..706 17..722 3480 99.7 Plus
CG31391-PA 1443 CG31391-RA 132..193 148..209 185 91.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-RA 1661 CG14689-RA 109..815 16..722 3505 99.7 Plus
CG31391-RA 1704 CG31391-RA 87..751 17..675 525 73.3 Plus
CG31467-RA 1694 CG31467-RA 142..322 29..209 395 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10710434..10711140 722..16 3505 99.7 Minus
3R 32079331 3R 10704797..10704989 209..17 470 82.9 Minus
3R 32079331 3R 10706542..10706722 209..29 395 81.2 Minus
Blast to na_te.dros performed on 2015-02-12 16:40:39 has no hits.

BS13706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:04 Download gff for BS13706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-PA 1..706 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:51 Download gff for BS13706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 106..815 10..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:00 Download gff for BS13706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 106..815 10..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:00 Download gff for BS13706.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10710434..10711143 10..722 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:51 Download gff for BS13706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6536156..6536865 10..722 99   Minus

BS13706.pep Sequence

Translation from 16 to 1479

> BS13706.pep
MKRVHVDNYTPKYYSGKWSWSAEKDCLEFEPHNDLENARERYITTNGYKF
LRIIDQEEELIFRQAYVRDTGTYDFDTLVINDIRDLVLFLMPSDFLTYRF
VEFMHRPAVHRLIHALIIYFEYFLRMVEFVLVRRDELADQIQSDQTIDMK
KTFSIYLSQYRLLVARNYSVILKGEGDMAKYYHMKEIINISDTSRDRVFH
EQFLAVMTQIVWICMHRRAYNVIEMEMNRLFRSDHFVMARPEYLSFTPAE
RSLLYGRNHKIVNYRTQISPLVQELEHVAEEDMPILWIGERKYRGNDKRI
AEMELEYIVPGPQLRMIDVAHGILGHPKDLYNTILDLDWPTVRYSNFSLG
YDPYHIIRQPHLDIPKIDALKARKMNENYEHFYKVYRIYEPHSVQILQKW
LKRDKLVQFYRSGGLLLTNVVSRCEKELAEKVPVTKVDQVISNYFKVKSR
LRKGSPYEPDNVSITSSRIGGFNSPRQKKTPQEYYFD*

BS13706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-PA 487 CG14689-PA 1..487 1..487 2577 100 Plus
CG31391-PA 480 CG31391-PA 1..478 1..477 1723 67.7 Plus
CG31467-PA 480 CG31467-PA 1..469 1..469 1685 68.2 Plus