Clone Sequence Records
BS13706.complete Sequence
1496 bp assembled on 2009-12-07
GenBank Submission: KX802844
> BS13706.complete
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAAC
CGTCTGTTTCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAG
CTTTACGCCGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCG
TTAACTATCGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTG
GCGGAGGAGGACATGCCCATCCTGTGGATTGGCGAGCGAAAGTACCGAGG
CAACGACAAGCGCATTGCCGAGATGGAGCTGGAGTACATTGTGCCGGGAC
CACAGCTGCGTATGATCGATGTGGCACACGGCATACTGGGACATCCGAAG
GATCTGTACAACACCATCCTAGACCTGGACTGGCCCACAGTTCGCTACTC
AAACTTTTCGCTTGGCTACGATCCGTACCACATCATTCGCCAGCCGCACT
TGGACATTCCCAAGATCGACGCCTTGAAAGCGCGCAAGATGAATGAAAAC
TACGAGCATTTCTACAAGGTGTATCGCATCTACGAGCCGCACAGCGTGCA
GATCCTGCAGAAGTGGCTCAAGCGGGACAAGCTCGTCCAGTTCTATCGCT
CCGGGGGACTGCTGCTCACCAACGTGGTATCCCGGTGCGAGAAGGAACTG
GCCGAAAAGGTACCGGTAACCAAGGTCGACCAGGTCATATCCAATTACTT
TAAGGTGAAGTCCAGGCTGCGCAAGGGATCTCCATATGAACCGGACAACG
TTAGCATCACCTCCTCGCGGATCGGGGGCTTCAATTCGCCGCGCCAAAAG
AAAACGCCACAGGAATACTATTTCGATTGAAAGCTTTCTAGACCAT
BS13706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1464 | CG14689-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
CG31391-RA | 1443 | CG31391-PA | 430..1050 | 440..1060 | 600 | 73.1 | Plus |
CG31391-RA | 1443 | CG31391-PA | 1..193 | 17..209 | 470 | 82.9 | Plus |
CG31467-RA | 1443 | CG31467-PA | 423..1050 | 433..1060 | 470 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 109..1573 | 16..1480 | 7325 | 100 | Plus |
CG31391-RA | 1704 | CG31391-RA | 516..1136 | 440..1060 | 600 | 73.1 | Plus |
CG31391-RA | 1704 | CG31391-RA | 87..279 | 17..209 | 470 | 82.9 | Plus |
CG31467-RA | 1694 | CG31467-RA | 552..1179 | 433..1060 | 470 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10709676..10711140 | 1480..16 | 7325 | 100 | Minus |
3R | 32079331 | 3R | 10703940..10704560 | 1060..440 | 600 | 73.1 | Minus |
3R | 32079331 | 3R | 10704797..10704989 | 209..17 | 470 | 82.9 | Minus |
3R | 32079331 | 3R | 10705685..10706312 | 1060..433 | 470 | 71.7 | Minus |
3R | 32079331 | 3R | 10706542..10706722 | 209..29 | 395 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:53:27 has no hits.
BS13706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:47 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1572 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:38 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1572 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:52 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1572 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:16 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 110..1572 | 17..1479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:16 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10709677..10711139 | 17..1479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:38 Download gff for
BS13706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6535399..6536861 | 17..1479 | 100 | | Minus |
BS13706.3prime Sequence
666 bp (546 high quality bases) assembled on 2006-10-13
> BS13706.3prime
ATGGTCTAGAAAGCTTTCAATCGAAATAGTATTCCTGTGGCGTTTTCTTT
TGGCGCGGCGAATTGAAGCCCCCGATCCGCGAGGAGGTGATGCTAACGTT
GTCCGGTTCATATGGAGATCCCTTGCGCAGCCTGGACTTCACCTTAAAGT
AATTGGATATGACCTGGTCGACCTTGGTTACCGGTACCTTTTCGGCCAGT
TCCTTCTCGCACCGGGATACCACGTTGGTGAGCAGCAGTCCCCCGGAGCG
ATAGAACTGGACGAGCTTGTCCCGCTTGAGCCACTTCTGCAGGATCTGCA
CGCTGTGCGGCTCGTAGATGCGATACACCTTGTAGAAATGCTCGTAGTTT
TCATTCATCTTGCGCGCTTTCAAGGCGTCGATCTTGGGAATGTCCAAGTG
CGGCTGGCGAATGATGTGGTACGGATCGTAGCCAAGCGAAAAGTTTGAGT
AGCGAACTGTGGGCCAGTCCAGGTCTAGGATGGTGTTGTACAGATCCTTC
GGATGTCCCAGTATGCCGTGTGCCACATCGATCATACGCAGCTGTGGTCC
CGGCACAATGTACTCCAGCTCCATCTCGGCAATGCGCTTGTCGTTGCCTC
GGTACTTTCGCTCGCCCAATCACAGGATGGGCATGTCCTCCTCCGCCACG
TGCTCCAACTCCTGAA
BS13706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 1464 | CG14689-RA | 817..1464 | 664..17 | 3165 | 99.5 | Minus |
CG31467-PA | 1443 | CG31467-RA | 901..935 | 586..552 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 926..1573 | 664..17 | 3195 | 99.7 | Minus |
CG31467-RA | 1694 | CG31467-RA | 976..1179 | 640..437 | 285 | 76.6 | Minus |
CG31391-RA | 1704 | CG31391-RA | 912..1136 | 661..437 | 270 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10709676..10710323 | 17..664 | 3195 | 99.5 | Plus |
3R | 32079331 | 3R | 10703940..10704164 | 437..661 | 270 | 74.7 | Plus |
3R | 32079331 | 3R | 10705685..10705888 | 437..640 | 270 | 75.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:51:24 has no hits.
BS13706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:03 Download gff for
BS13706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 817..1464 | 17..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:13 Download gff for
BS13706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 924..1576 | 10..666 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:32 Download gff for
BS13706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 924..1576 | 10..666 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:32 Download gff for
BS13706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10709673..10710325 | 10..666 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:13 Download gff for
BS13706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6535395..6536047 | 10..666 | 98 | | Plus |
BS13706.5prime Sequence
722 bp (586 high quality bases) assembled on 2006-10-13
> BS13706.5prime
GAAGTTATCAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGA
AGTACTATAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAA
TTCGAGCCGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCAC
CAATGGCTATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCT
TCCGGCAGGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTG
GTGATCAACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTT
TCTGACCTACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTC
TGATCCATGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAG
TTTGTGCTGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCA
GACCATCGATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCC
TCCTGGTGGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATG
GCCAAATACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCG
CGACCGCGTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTT
GGATCTGCATGCATCGCCGTGCGTACAATGTCATTGAGATGAAAATGAAC
GGTCTGTTTCGTTCCGATCACT
BS13706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 1464 | CG14689-RA | 1..706 | 17..722 | 3480 | 99.7 | Plus |
CG31391-PA | 1443 | CG31391-RA | 132..193 | 148..209 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-RA | 1661 | CG14689-RA | 109..815 | 16..722 | 3505 | 99.7 | Plus |
CG31391-RA | 1704 | CG31391-RA | 87..751 | 17..675 | 525 | 73.3 | Plus |
CG31467-RA | 1694 | CG31467-RA | 142..322 | 29..209 | 395 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10710434..10711140 | 722..16 | 3505 | 99.7 | Minus |
3R | 32079331 | 3R | 10704797..10704989 | 209..17 | 470 | 82.9 | Minus |
3R | 32079331 | 3R | 10706542..10706722 | 209..29 | 395 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:40:39 has no hits.
BS13706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:04 Download gff for
BS13706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-PA | 1..706 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:51 Download gff for
BS13706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..815 | 10..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:00 Download gff for
BS13706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14689-RA | 106..815 | 10..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:00 Download gff for
BS13706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10710434..10711143 | 10..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:51 Download gff for
BS13706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6536156..6536865 | 10..722 | 99 | | Minus |
BS13706.pep Sequence
Translation from 16 to 1479
> BS13706.pep
MKRVHVDNYTPKYYSGKWSWSAEKDCLEFEPHNDLENARERYITTNGYKF
LRIIDQEEELIFRQAYVRDTGTYDFDTLVINDIRDLVLFLMPSDFLTYRF
VEFMHRPAVHRLIHALIIYFEYFLRMVEFVLVRRDELADQIQSDQTIDMK
KTFSIYLSQYRLLVARNYSVILKGEGDMAKYYHMKEIINISDTSRDRVFH
EQFLAVMTQIVWICMHRRAYNVIEMEMNRLFRSDHFVMARPEYLSFTPAE
RSLLYGRNHKIVNYRTQISPLVQELEHVAEEDMPILWIGERKYRGNDKRI
AEMELEYIVPGPQLRMIDVAHGILGHPKDLYNTILDLDWPTVRYSNFSLG
YDPYHIIRQPHLDIPKIDALKARKMNENYEHFYKVYRIYEPHSVQILQKW
LKRDKLVQFYRSGGLLLTNVVSRCEKELAEKVPVTKVDQVISNYFKVKSR
LRKGSPYEPDNVSITSSRIGGFNSPRQKKTPQEYYFD*
BS13706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14689-PA | 487 | CG14689-PA | 1..487 | 1..487 | 2577 | 100 | Plus |
CG31391-PA | 480 | CG31391-PA | 1..478 | 1..477 | 1723 | 67.7 | Plus |
CG31467-PA | 480 | CG31467-PA | 1..469 | 1..469 | 1685 | 68.2 | Plus |