Clone Sequence Records
BS13711.3prime Sequence
602 bp (576 high quality bases) assembled on 2006-10-13
> BS13711.3prime
ATGGTCTAGAAAGCTTTTAAGTCCGGGCCTTATCAGCATTGGTTCCCGTG
GCAAGTGGTCCTTGGGGTTTTGCCAACATATCTAATGTTTCGAATTCATC
CTCCTCTTCGGACTCCAAGTGGGCATCGAAAAGGGCACAGAAGTCCCTTA
TGTAGTTCCTAAGACTTGCAATTCGCGACTGCAATTGCACAAAGATGCGT
TCATCGAAGACTTTCACCTTGATTCTATCGCCAGTATCTTTAGTTATCGA
AGCCAGATCGTATAGGTCCCTTCGCTCGTCCAGATTCTTGCTACACAGGC
GGCTGAGGTGCGTTACAAAGTCCTCCATGTCCTCTATAAGTTCCACTACT
AAAAAATAGTTTTTGGTCTTATTTCGAGCAGTTATAGGCTTTGCAACGGA
ATAGGCATAATCGAACTTTTCACCAATGGCCTTAAGATCACCCGGTAGTC
CCTTTAAAGCATTCTGAGTGCAGACTAAAAGACCATTCATATCTGTGAAG
GCTCTCCAGTCTGCTGATAATAGCTCATAATCTGGCCACCAGTCTTCATT
TTCATCTTGAAACTCATCTCGAGTGGAAGCTATCATGCGAGTCTTTAGTA
TC
BS13711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 717 | CG17744-RA | 132..717 | 602..17 | 2930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 178..763 | 602..17 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025964..7026431 | 17..484 | 2340 | 100 | Plus |
| 3L | 28110227 | 3L | 7026499..7026617 | 484..602 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:57:29 has no hits.
BS13711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:06 Download gff for
BS13711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 132..717 | 17..602 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:39 Download gff for
BS13711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 178..765 | 13..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:33 Download gff for
BS13711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 178..765 | 13..602 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:33 Download gff for
BS13711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025962..7026431 | 13..484 | 99 | <- | Plus |
| 3L | 7026500..7026617 | 485..602 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:39 Download gff for
BS13711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019062..7019531 | 13..484 | 99 | <- | Plus |
| arm_3L | 7019600..7019717 | 485..602 | 100 | | Plus |
BS13711.5prime Sequence
599 bp (574 high quality bases) assembled on 2006-10-13
> BS13711.5prime
GAAGTTATCAGTCGACATGGAGTCTGCTAAAGTCCTAAATAAACTATTGA
AGGAAGCTCCCAAAGATTCAAAAGGAAGCAAAGAGATTGAAGAGTTACGA
AACCTGATCATAGAGCTGATGAAACCACGACTGGGACAACTACTTCAGAT
ACTAAAGACTCGCATGATAGCTTCCACTCGAGATGAGTTTCAAGATGAAA
ATGAAGACTGGTGGCCAGATTATGAGCTATTATCAGCAGACTGGAGAGCC
TTCACAGATATGAATGGTCTTTTAGTCTGCACTCAGAATGCTTTAAAGGG
ACTACCGGGTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATT
CCGTTGCAAAGCCTATAACTGCTCGAAATAAGACCAAAAACTATTTTTTA
GTAGTGGAACTTATAGAGGACATGGAGGACTTTGTAACGCACCTCAGCCG
CCTGTGTAGCAAGAATCTGGACGAGCGAAGGGACCTATACGATCTGGCTT
CGATAACTAAAGATACTGGCGATAGAATCAAGGTGAAAGTCTTCGATGAA
CGCATCTTTGTGCAATTGCAGTCGCGAATTGCAAGTCTTAAGAACTACA
BS13711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 717 | CG17744-RA | 1..583 | 17..599 | 2865 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..629 | 16..599 | 2890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7026098..7026431 | 599..266 | 1655 | 99.7 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 266..16 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:22 has no hits.
BS13711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:06 Download gff for
BS13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:32 Download gff for
BS13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..628 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:55 Download gff for
BS13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..628 | 12..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:55 Download gff for
BS13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7026099..7026431 | 266..598 | 99 | <- | Minus |
| 3L | 7026500..7026754 | 12..265 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:32 Download gff for
BS13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019199..7019531 | 266..598 | 99 | <- | Minus |
| arm_3L | 7019600..7019854 | 12..265 | 98 | | Minus |
BS13711.complete Sequence
749 bp assembled on 2006-11-01
GenBank Submission: FJ637506
> BS13711.complete
GAAGTTATCAGTCGACATGGAGTCTGCTAAAGTCCTAAATAAACTATTGA
AGGAAGCTCCCAAAGATTCAAAAGGAAGCAAAGAGATTGAAGAGTTACGA
AACCTGATCATAGAGCTGATGAAACCACGACTGGGACAACTACTTCAGAT
ACTAAAGACTCGCATGATAGCTTCCACTCGAGATGAGTTTCAAGATGAAA
ATGAAGACTGGTGGCCAGATTATGAGCTATTATCAGCAGACTGGAGAGCC
TTCACAGATATGAATGGTCTTTTAGTCTGCACTCAGAATGCTTTAAAGGG
ACTACCGGGTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATT
CCGTTGCAAAGCCTATAACTGCTCGAAATAAGACCAAAAACTATTTTTTA
GTAGTGGAACTTATAGAGGACATGGAGGACTTTGTAACGCACCTCAGCCG
CCTGTGTAGCAAGAATCTGGACGAGCGAAGGGACCTATACGATCTGGCTT
CGATAACTAAAGATACTGGCGATAGAATCAAGGTGAAAGTCTTCGATGAA
CGCATCTTTGTGCAATTGCAGTCGCGAATTGCAAGTCTTAGGAACTACAT
AAGGGACTTCTGTGCCCTTTTCGATGCCCACTTGGAGTCCGAAGAGGAGG
ATGAATTCGAAACATTAGATATGTTGGCAAAACCCCAAGGACCACTTGCC
ACGGGAACCAATGCTGATAAGGCCCGGACTTAAAAGCTTTCTAGACCAT
BS13711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 717 | CG17744-PA | 1..717 | 17..733 | 3570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..763 | 16..733 | 3575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025964..7026431 | 733..266 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 266..16 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:57:01 has no hits.
BS13711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:03 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:27 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 28..752 | 12..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:34 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 47..761 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:03 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 28..752 | 12..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:51 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 47..761 | 17..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:51 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025966..7026431 | 266..731 | 100 | <- | Minus |
| 3L | 7026500..7026748 | 17..265 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:34 Download gff for
BS13711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019066..7019531 | 266..731 | 100 | <- | Minus |
| arm_3L | 7019600..7019848 | 17..265 | 99 | | Minus |
BS13711.pep Sequence
Translation from 16 to 732
> BS13711.pep
MESAKVLNKLLKEAPKDSKGSKEIEELRNLIIELMKPRLGQLLQILKTRM
IASTRDEFQDENEDWWPDYELLSADWRAFTDMNGLLVCTQNALKGLPGDL
KAIGEKFDYAYSVAKPITARNKTKNYFLVVELIEDMEDFVTHLSRLCSKN
LDERRDLYDLASITKDTGDRIKVKVFDERIFVQLQSRIASLRNYIRDFCA
LFDAHLESEEEDEFETLDMLAKPQGPLATGTNADKART*
BS13711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 238 | CG17744-PA | 1..238 | 1..238 | 1220 | 100 | Plus |
