Clone Sequence Records
BS13712.3prime Sequence
721 bp (636 high quality bases) assembled on 2006-10-13
> BS13712.3prime
ATGGTCTAGAAAGCTTTTAAATGGGATACAACCATTCGGAGAGATGACTT
GGAACAGTAGGCTTTCTATTCTTGCCATCGATTTGATCCTGTTCCTCATC
ACTGCTGCACTGGCTGCAATCGCTAACACTATTTGCCCGCGGCAGATCTT
GAGCGATTTGAGCCAAATTCGATTGCTCAGCATTACTCAAAGCAGCTCGG
TGTAAGGATGCGGCTCTCATCCTTCGAGCATGAAGTCGGGCATGAGCTCG
AGCTATGCCATCTGCCCGCATGCGATTACGGCGTCTTTGAACTTCTTCGG
GCGAGGGGCGAGAATTTTCTAGATCCTCCATGAATTCCGTGATCAGTCGA
GTCATTTCCTGTCTCTCGCTAGGGGAGAGGGGACCCATAGGTTCGATAAG
AGTGAAGTTCTCTGGCTGGAATCGGCCATAAGGACGGTTGATCACTTCCG
GATCGGAGCTCAATCGTCTCCTTATTACTTGCCATATTGGTAATGGAGGT
GATTGTGATGCTGATGGTGTGGACGTAATGGTGGCATGGGGTATCAAGTT
GGTGGTACCTTGCACAGGTCGCAAGCCGAAAAGTCCGGTATCGAGATCAT
GGTTGGATACTTCGGATCCTGATGATTGACTGCCATCCACCGTGGTGGTT
GATAACGATAGCGATAACGAATCGGTATCCGTATCTGAATCCGATGTACT
TCCCAGAATTTCATTGGCATT
BS13712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 801 | CG13471-RA | 97..801 | 721..17 | 3450 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 165..869 | 721..17 | 3480 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732649..14733353 | 17..721 | 3480 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:17 has no hits.
BS13712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:07 Download gff for
BS13712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 97..801 | 17..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:27 Download gff for
BS13712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 165..872 | 12..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:23 Download gff for
BS13712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 165..872 | 12..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:23 Download gff for
BS13712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732646..14733353 | 12..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:27 Download gff for
BS13712.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725746..14726453 | 12..721 | 99 | | Plus |
BS13712.5prime Sequence
717 bp (608 high quality bases) assembled on 2006-10-13
> BS13712.5prime
GAAGTTATCAGTCGACATGTCATCATCCGAAACCGAATGGTTTGCAGAGG
TAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCGCT
TCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCAGA
TACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGATG
GCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCGGA
CTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCATGC
CACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAATAT
GGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACCGT
CCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATGGG
TCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGAAT
TCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAAGA
CGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGACT
TCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAGTA
ATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGGCA
AATAGTGTTAGCGAATG
BS13712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 801 | CG13471-RA | 1..698 | 17..714 | 3440 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 69..766 | 17..714 | 3460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732752..14733449 | 714..17 | 3460 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:09:59 has no hits.
BS13712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:07 Download gff for
BS13712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 1..701 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:14 Download gff for
BS13712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..769 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:46 Download gff for
BS13712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..769 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:46 Download gff for
BS13712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732749..14733449 | 17..717 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:14 Download gff for
BS13712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725849..14726549 | 17..717 | 99 | | Minus |
BS13712.complete Sequence
833 bp assembled on 2006-11-01
GenBank Submission: FJ637507
> BS13712.complete
GAAGTTATCAGTCGACATGTCATCATCCGAAACCGAATGGTTTGCAGAGG
TAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCGCT
TCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCAGA
TACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGATG
GCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCGGA
CTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCATGC
CACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAATAT
GGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACCGT
CCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATGGG
TCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGAAT
TCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAAGA
CGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGACT
TCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAGTA
ATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGGCA
AATAGTGTTAGCGATTGCAGCCAGTGCAGCAGTGATGAGGAACAGGATCA
AATCGATGGCAAGAATAGAAAGCCTACTGTTCCAAGTCATCTCTCCGAAT
GGTTGTATCCCATTTAAAAGCTTTCTAGACCAT
BS13712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 801 | CG13471-PA | 1..801 | 17..817 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 69..869 | 17..817 | 3975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732649..14733449 | 817..17 | 3975 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:05 has no hits.
BS13712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:36 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:05 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..872 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:01 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..867 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:36 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..872 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:26 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..867 | 17..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:26 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732651..14733449 | 17..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:01 Download gff for
BS13712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725751..14726549 | 17..815 | 99 | | Minus |
BS13712.pep Sequence
Translation from 16 to 816
> BS13712.pep
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPI*
BS13712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 266 | CG13471-PA | 1..266 | 1..266 | 1358 | 100 | Plus |
