Clone BS13713 Report

Search the DGRC for BS13713

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptsrpk79D-RB
Protein status:BS13713.pep: full length peptide match
Sequenced Size:2282

Clone Sequence Records

BS13713.complete Sequence

2282 bp assembled on 2009-12-07

GenBank Submission: KX803559

> BS13713.complete
GAAGTTATCAGTCGACATGGATGACTTTGGCTCGACCGCATCCGACTTGG
AAGAGGCCACCTGCCCCATGCAGGCCAATGCCACGTTCAGCATCGATTGG
CGAGTGACCCTGCTGGACCACTGGTTGGATCTCTATCTTGGCTACATGAA
CCGCCTACACATGCTGCTATCACTAGCCGGCAGGCTGCATCTTCTAAGCC
GGCACATCCTGGGTACTCTCGGCCAGGATCCGATTTTTATGGGTGTGCTG
CAGGGCAGCCTGTTAATGCTCTTCCTCTTCCTGATGCACCTGCTGCGGCT
GTGGAGCTGTGGATACGCAGTTGAGCGGCCGCTGAACCCCACTCCGGACG
TGGCAAAAGAGCTGAGCTGCGACTTCAACTTCGTCTCCGAGCAAGAGAAG
CGAGCTGCCCAAGAAGCCGCGACGGAGGCTCTGCTAGAGGTTGAGGAGAA
GAAGCGCCGCAAGCGGTTTACAAAGAAGCGCAACTGCGTGTCCGCCGGGC
CGATCCTTATTGCCTTGCGCCATCAGTCTAAGCGACCAAAGCACCATCGT
CACGCTGCTCTACCCTTTGAGCCCGTTACCCCCGGGGAAATAATCCTGGA
TACCTACTTGCCGCCGCGGGAACTGCCGCTCACGATAAGACTGCCTCAGT
TGGCGGAGCCGGTCAAGGAAGAGGAAGTCGAATATATCGAGCTTAAATCG
GAGCCCCGGGGGACCCTCAGTACGACCGACGAAATTTACCCGGATTCGTC
CGACAGCAGTCTTTACGTTTCAGACGAGGAGCAGGAAGACGCCTCTCAGT
ATTGCCGCGGTGGATACCATCCAGTAGTCATCGGAGACATATTTGACAAC
CGGTTTCGAGTGGTCAGAAAACTGGGCTGGGGCCATTTTTCCACTGTCTG
GCTATGCCGGGATCTCAAAGATGAGAAGTACGTGGCCCTCAAGGTTGTTA
AGAGTGCTCCGCATTACATAGAGACGGCAGCGGACGAGATCCGGCTCCTG
GAAGCTATCCGTGACGCAGACCCCATGGACGTTAAGCGGGAGAGGATCGT
GCGACTGATGAACCACTTCACTGTGCGCGGTGTGAATGGAATGCACACCT
GCCTGGTTTTCGAGGCCCTGGGCTGCAGCTTGTATAAGCTGATAGTGAAG
AACAACTACCAGGGTCTGGCCATCGCTCAGGTGCGTAACATAATCCGCCA
GGTTTTGGAGGGACTGGACTACCTGCACAGCAAGTGTAGCATCATACACA
CGGACATTAAGCCGGAGAACATCCTGCTGGTGATCGATAATGCCGCCGCG
ATGAACCAGCAGATCGACGATGAGATCAACAGTCTGCGCGTGAAGGGTGT
CGACTTCCCCGACTCGTACATCAGCTCCATCGAGAAGCAGACCAAGTCGC
GGGCCAAGTGGCCACTGATCGAGCCAAATGGATCGACCAACACCAACACT
AACACTAGCAATAGCACGGCGACCAATTCCAATTCGTCGACTCCGCTGGC
CGCCGTGATCATGTCCACGCTGGACAAGGAGGACACCACGACAACCACCT
CGTCCACGCTCAATTCCAACACCACATCATCGCTGGCCTCCAAGTACTCC
AGTCTGTTGGGGGACAGCGAGTGCAACGGAGGCCTCGGCGGATCAGCGAA
CATAAACAACCGCTACCGAACGGAGAAGAAAATCACTGCCAAGAACCAGA
GTCAGAGTAGCCAGAACAACACCTACACGATCCAGTCGCTCATTGACAAC
AGCAACGTTCGGGTAAAGATCGCCGACTTGGGGAACGCCTGCTACGACTA
CCATCACTTTACTGAGGACATTCAGACTCGCCAGTATCGATCAATCGAGG
TTCTTTTGGGAGCGCCGTACAATTATACCGCCGACATCTGGAGCACAGCC
TGTTTGGCCTTCGAGCTGGCCACCGGCGACTACCTGTTCGACCCTCACGC
CGGAGAGTCTTACAGTCGGGACGAGGACCACTTGGCGCATATTGTGGAGC
TGCTGGGCTCCATACCGCAGTCGGTGATCTTCCGCGGTAAGCACGGGCTG
AAGTACTTCACCAGCTATGGTAGCCTGAGGAACATCACCAAGCTGAAGCC
CTGGAGTCTAATGAACGTGCTGGTGGAGAAGTACGACTGGGACCCGGTGG
AGGCCAAGAAGTTCTCCGACTTTCTGCTGCCCATGCTTGAGTACAATCCG
GTTATACGGGCGTCGGCAGCGGAGTGCCTGCAGCATCCGTGGTTGGAGCA
GGAGGAGTTCGTCTAAAAGCTTTCTAGACCAT

BS13713.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
srpk79D-RO 2250 CG11489-PO 1..2250 17..2266 11235 100 Plus
srpk79D-RB 2250 CG11489-PB 1..2250 17..2266 11235 100 Plus
srpk79D-RN 2409 CG11489-PN 1..1677 17..1693 8370 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
srpk79D-RO 3771 CG11489-RO 340..2589 17..2266 11235 100 Plus
srpk79D-RB 3760 CG11489-RB 329..2578 17..2266 11235 100 Plus
srpk79D-RN 3930 CG11489-RN 340..2016 17..1693 8370 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22278052..22278731 17..696 3400 100 Plus
3L 28110227 3L 22279108..22279559 919..1370 2245 99.8 Plus
3L 28110227 3L 22279614..22279936 1371..1693 1615 100 Plus
3L 28110227 3L 22282562..22282836 1799..2073 1375 100 Plus
3L 28110227 3L 22278823..22279044 697..918 1110 100 Plus
3L 28110227 3L 22282903..22283100 2069..2266 990 100 Plus
3L 28110227 3L 22281677..22281783 1692..1798 535 100 Plus
2R 25286936 2R 15384892..15385158 1752..2018 285 73.8 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:13 has no hits.

BS13713.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:29 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
CG11489-RB 329..2576 17..2264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:45 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RB 329..2576 17..2264 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 18:29:51 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
CG11489-RB 329..2576 17..2264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:12 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RB 329..2576 17..2264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:12 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22282562..22282832 1799..2069 100 -> Plus
3L 22282904..22283098 2070..2264 100   Plus
3L 22278052..22278731 17..696 100 -> Plus
3L 22278823..22279044 697..918 100 -> Plus
3L 22279108..22279559 919..1370 99 -> Plus
3L 22279614..22279936 1371..1693 100 -> Plus
3L 22281679..22281783 1694..1798 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:45 Download gff for BS13713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22275662..22275932 1799..2069 100 -> Plus
arm_3L 22276004..22276198 2070..2264 100   Plus
arm_3L 22271152..22271831 17..696 100 -> Plus
arm_3L 22271923..22272144 697..918 100 -> Plus
arm_3L 22272208..22272659 919..1370 99 -> Plus
arm_3L 22272714..22273036 1371..1693 100 -> Plus
arm_3L 22274779..22274883 1694..1798 100 -> Plus

BS13713.3prime Sequence

586 bp (517 high quality bases) assembled on 2006-10-13

> BS13713.3prime
ATGGTCTAGAAAGCTTTTAGACGAACTCCTCCTGCTCCAACCACGGATGC
TGCAGGCACTCCGCTGCCGACGCCCGTATAACCGGATTGTACTCAAGCAT
GGGCAGCAGAAAGTCGGAGAACTTCTTGGCCTCCACCGGGTCCCAGTCGT
ACTTCTCCACCAGCACGTTCATTAGACTCCAGGGCTTCAGCTTGGTGATG
TTCCTCAGGCTACCATAGCTGGTGAAGTACTTCAGCCCGTGCTTACCGCG
GAAGATCACCGACTGCGGTATGGAGCCCAGCAGCTCCACAATATGCGCCA
AGTGGTCCTCGTCCCGACTGTAAGACTCTCCGGCGTGAGGGTCGAACAGG
TAGTCGCCGGTGGCCAGCTCGAAGGCCAAACAGGCTGTGCTCCAGATGTC
GGCGGTATAATTGTACGGCGCTCCCAAAAGAACCTCGATTGATCGATACT
GGCGAGTCTGAATGTCCTCAGTAAAGTGATGGTAGTCGTAGCAGGCGTTC
CCCAAGTCGGCGATCTTTACCCGAACGTTGCTGTTGTCAATGAGCGACTG
GATCGTGTAGGTGTTGTTCTGGCTACCCTGACTCTG

BS13713.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11489-PB 2250 CG11489-RB 1681..2250 586..17 2825 99.8 Minus
CG11489-PC 2451 CG11489-RC 1882..2451 586..17 2825 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
srpk79D-RO 3771 CG11489-RO 2020..2589 586..17 2835 99.8 Minus
srpk79D-RN 3930 CG11489-RN 2179..2748 586..17 2835 99.8 Minus
srpk79D-RM 4765 CG11489-RM 2961..3530 586..17 2835 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22282562..22282836 484..210 1375 100 Minus
3L 28110227 3L 22282903..22283100 214..17 990 100 Minus
3L 28110227 3L 22281682..22281783 586..485 495 99 Minus
2R 25286936 2R 15384892..15385158 531..265 285 73.8 Minus
Blast to na_te.dros performed on 2015-02-12 16:40:51 has no hits.

BS13713.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:08 Download gff for BS13713.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11489-PC 1882..2451 17..586 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:54 Download gff for BS13713.3prime
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RM 2961..3533 14..586 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:32 Download gff for BS13713.3prime
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RM 2961..3533 14..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:32 Download gff for BS13713.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22281682..22281783 485..586 99 -> Minus
3L 22282562..22282832 214..484 100 -> Minus
3L 22282904..22283103 14..213 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:54 Download gff for BS13713.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22274782..22274883 485..586 99 -> Minus
arm_3L 22275662..22275932 214..484 100 -> Minus
arm_3L 22276004..22276203 14..213 99   Minus

BS13713.5prime Sequence

631 bp (496 high quality bases) assembled on 2006-10-13

> BS13713.5prime
GAAGTTATCAGTCGACATGGATGACTTTGGCTCGACCGCATCCGACTTGG
AAGAGGCCACCTGCCCCATGCAGGCCAATGCCACGTTCAGCATCGATTGG
CGAGTGACCCTGCTGGACCACTGGTTGGATCTCTATCTTGGCTACATGAA
CCGCCTACACATGCTGCTATCACTAGCCGGCAGGCTGCATCTTCTAAGCC
GGCACATCCTGGGTACTCTCGGCCAGGATCCGATTTTTATGGGTGTGCTG
CAGGGCAGCCTGTTAATGCTCTTCCTCTTCCTGATGCACCTGCTGCGGCT
GTGGAGCTGTGGATACGCAGTTGAGCGGCCGCTGAACCCCACTCCGGACG
TGGCAAAAGAGCTGAGCTGCGACTTCAACTTCGTCTCCGAGCAAGAGAAG
CGAGCTGCCCAAGAAGCCGCGACGGAGGCTCTGCTAGAGGTTGAGGAGAA
GAAGCGCCGCAAGCGGTTTACAAAGAAGCGCAACTGCGTGTCCGCCGGGC
CGATCCTTATTGCCTTGCGCCATCAGTCTAAGCGACCAAAGCACCATCGT
CACGCTGCTCTACCCTTTGAGCCCGTTACCCCCGGGGAAATAATCCTGGA
TACCTACTTGCCGCCGCGGGAACTGCCGCTC

BS13713.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11489-PB 2250 CG11489-RB 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
srpk79D-RO 3771 CG11489-RO 340..954 17..631 3075 100 Plus
srpk79D-RN 3930 CG11489-RN 340..954 17..631 3075 100 Plus
srpk79D-RM 4765 CG11489-RM 678..1292 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22278052..22278666 17..631 3075 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:09:44 has no hits.

BS13713.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:08 Download gff for BS13713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11489-PB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:08 Download gff for BS13713.5prime
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RM 666..1292 7..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:07 Download gff for BS13713.5prime
Subject Subject Range Query Range Percent Splice Strand
srpk79D-RM 666..1292 7..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:07 Download gff for BS13713.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22278040..22278666 7..631 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:08 Download gff for BS13713.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22271140..22271766 7..631 99   Plus

BS13713.pep Sequence

Translation from 16 to 2265

> BS13713.pep
MDDFGSTASDLEEATCPMQANATFSIDWRVTLLDHWLDLYLGYMNRLHML
LSLAGRLHLLSRHILGTLGQDPIFMGVLQGSLLMLFLFLMHLLRLWSCGY
AVERPLNPTPDVAKELSCDFNFVSEQEKRAAQEAATEALLEVEEKKRRKR
FTKKRNCVSAGPILIALRHQSKRPKHHRHAALPFEPVTPGEIILDTYLPP
RELPLTIRLPQLAEPVKEEEVEYIELKSEPRGTLSTTDEIYPDSSDSSLY
VSDEEQEDASQYCRGGYHPVVIGDIFDNRFRVVRKLGWGHFSTVWLCRDL
KDEKYVALKVVKSAPHYIETAADEIRLLEAIRDADPMDVKRERIVRLMNH
FTVRGVNGMHTCLVFEALGCSLYKLIVKNNYQGLAIAQVRNIIRQVLEGL
DYLHSKCSIIHTDIKPENILLVIDNAAAMNQQIDDEINSLRVKGVDFPDS
YISSIEKQTKSRAKWPLIEPNGSTNTNTNTSNSTATNSNSSTPLAAVIMS
TLDKEDTTTTTSSTLNSNTTSSLASKYSSLLGDSECNGGLGGSANINNRY
RTEKKITAKNQSQSSQNNTYTIQSLIDNSNVRVKIADLGNACYDYHHFTE
DIQTRQYRSIEVLLGAPYNYTADIWSTACLAFELATGDYLFDPHAGESYS
RDEDHLAHIVELLGSIPQSVIFRGKHGLKYFTSYGSLRNITKLKPWSLMN
VLVEKYDWDPVEAKKFSDFLLPMLEYNPVIRASAAECLQHPWLEQEEFV*

BS13713.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
srpk79D-PO 749 CG11489-PO 1..749 1..749 3909 100 Plus
srpk79D-PB 749 CG11489-PB 1..749 1..749 3909 100 Plus
srpk79D-PN 802 CG11489-PN 1..802 1..749 3845 93.4 Plus
srpk79D-PE 802 CG11489-PE 1..802 1..749 3845 93.4 Plus
srpk79D-PI 898 CG11489-PI 1..587 1..581 2914 96.8 Plus