Clone Sequence Records
BS13713.complete Sequence
2282 bp assembled on 2009-12-07
GenBank Submission: KX803559
> BS13713.complete
GAAGTTATCAGTCGACATGGATGACTTTGGCTCGACCGCATCCGACTTGG
AAGAGGCCACCTGCCCCATGCAGGCCAATGCCACGTTCAGCATCGATTGG
CGAGTGACCCTGCTGGACCACTGGTTGGATCTCTATCTTGGCTACATGAA
CCGCCTACACATGCTGCTATCACTAGCCGGCAGGCTGCATCTTCTAAGCC
GGCACATCCTGGGTACTCTCGGCCAGGATCCGATTTTTATGGGTGTGCTG
CAGGGCAGCCTGTTAATGCTCTTCCTCTTCCTGATGCACCTGCTGCGGCT
GTGGAGCTGTGGATACGCAGTTGAGCGGCCGCTGAACCCCACTCCGGACG
TGGCAAAAGAGCTGAGCTGCGACTTCAACTTCGTCTCCGAGCAAGAGAAG
CGAGCTGCCCAAGAAGCCGCGACGGAGGCTCTGCTAGAGGTTGAGGAGAA
GAAGCGCCGCAAGCGGTTTACAAAGAAGCGCAACTGCGTGTCCGCCGGGC
CGATCCTTATTGCCTTGCGCCATCAGTCTAAGCGACCAAAGCACCATCGT
CACGCTGCTCTACCCTTTGAGCCCGTTACCCCCGGGGAAATAATCCTGGA
TACCTACTTGCCGCCGCGGGAACTGCCGCTCACGATAAGACTGCCTCAGT
TGGCGGAGCCGGTCAAGGAAGAGGAAGTCGAATATATCGAGCTTAAATCG
GAGCCCCGGGGGACCCTCAGTACGACCGACGAAATTTACCCGGATTCGTC
CGACAGCAGTCTTTACGTTTCAGACGAGGAGCAGGAAGACGCCTCTCAGT
ATTGCCGCGGTGGATACCATCCAGTAGTCATCGGAGACATATTTGACAAC
CGGTTTCGAGTGGTCAGAAAACTGGGCTGGGGCCATTTTTCCACTGTCTG
GCTATGCCGGGATCTCAAAGATGAGAAGTACGTGGCCCTCAAGGTTGTTA
AGAGTGCTCCGCATTACATAGAGACGGCAGCGGACGAGATCCGGCTCCTG
GAAGCTATCCGTGACGCAGACCCCATGGACGTTAAGCGGGAGAGGATCGT
GCGACTGATGAACCACTTCACTGTGCGCGGTGTGAATGGAATGCACACCT
GCCTGGTTTTCGAGGCCCTGGGCTGCAGCTTGTATAAGCTGATAGTGAAG
AACAACTACCAGGGTCTGGCCATCGCTCAGGTGCGTAACATAATCCGCCA
GGTTTTGGAGGGACTGGACTACCTGCACAGCAAGTGTAGCATCATACACA
CGGACATTAAGCCGGAGAACATCCTGCTGGTGATCGATAATGCCGCCGCG
ATGAACCAGCAGATCGACGATGAGATCAACAGTCTGCGCGTGAAGGGTGT
CGACTTCCCCGACTCGTACATCAGCTCCATCGAGAAGCAGACCAAGTCGC
GGGCCAAGTGGCCACTGATCGAGCCAAATGGATCGACCAACACCAACACT
AACACTAGCAATAGCACGGCGACCAATTCCAATTCGTCGACTCCGCTGGC
CGCCGTGATCATGTCCACGCTGGACAAGGAGGACACCACGACAACCACCT
CGTCCACGCTCAATTCCAACACCACATCATCGCTGGCCTCCAAGTACTCC
AGTCTGTTGGGGGACAGCGAGTGCAACGGAGGCCTCGGCGGATCAGCGAA
CATAAACAACCGCTACCGAACGGAGAAGAAAATCACTGCCAAGAACCAGA
GTCAGAGTAGCCAGAACAACACCTACACGATCCAGTCGCTCATTGACAAC
AGCAACGTTCGGGTAAAGATCGCCGACTTGGGGAACGCCTGCTACGACTA
CCATCACTTTACTGAGGACATTCAGACTCGCCAGTATCGATCAATCGAGG
TTCTTTTGGGAGCGCCGTACAATTATACCGCCGACATCTGGAGCACAGCC
TGTTTGGCCTTCGAGCTGGCCACCGGCGACTACCTGTTCGACCCTCACGC
CGGAGAGTCTTACAGTCGGGACGAGGACCACTTGGCGCATATTGTGGAGC
TGCTGGGCTCCATACCGCAGTCGGTGATCTTCCGCGGTAAGCACGGGCTG
AAGTACTTCACCAGCTATGGTAGCCTGAGGAACATCACCAAGCTGAAGCC
CTGGAGTCTAATGAACGTGCTGGTGGAGAAGTACGACTGGGACCCGGTGG
AGGCCAAGAAGTTCTCCGACTTTCTGCTGCCCATGCTTGAGTACAATCCG
GTTATACGGGCGTCGGCAGCGGAGTGCCTGCAGCATCCGTGGTTGGAGCA
GGAGGAGTTCGTCTAAAAGCTTTCTAGACCAT
BS13713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srpk79D-RO | 2250 | CG11489-PO | 1..2250 | 17..2266 | 11235 | 100 | Plus |
srpk79D-RB | 2250 | CG11489-PB | 1..2250 | 17..2266 | 11235 | 100 | Plus |
srpk79D-RN | 2409 | CG11489-PN | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srpk79D-RO | 3771 | CG11489-RO | 340..2589 | 17..2266 | 11235 | 100 | Plus |
srpk79D-RB | 3760 | CG11489-RB | 329..2578 | 17..2266 | 11235 | 100 | Plus |
srpk79D-RN | 3930 | CG11489-RN | 340..2016 | 17..1693 | 8370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22278052..22278731 | 17..696 | 3400 | 100 | Plus |
3L | 28110227 | 3L | 22279108..22279559 | 919..1370 | 2245 | 99.8 | Plus |
3L | 28110227 | 3L | 22279614..22279936 | 1371..1693 | 1615 | 100 | Plus |
3L | 28110227 | 3L | 22282562..22282836 | 1799..2073 | 1375 | 100 | Plus |
3L | 28110227 | 3L | 22278823..22279044 | 697..918 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 22282903..22283100 | 2069..2266 | 990 | 100 | Plus |
3L | 28110227 | 3L | 22281677..22281783 | 1692..1798 | 535 | 100 | Plus |
2R | 25286936 | 2R | 15384892..15385158 | 1752..2018 | 285 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:13 has no hits.
BS13713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:29 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11489-RB | 329..2576 | 17..2264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:45 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RB | 329..2576 | 17..2264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 18:29:51 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11489-RB | 329..2576 | 17..2264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:12 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RB | 329..2576 | 17..2264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:12 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22282562..22282832 | 1799..2069 | 100 | -> | Plus |
3L | 22282904..22283098 | 2070..2264 | 100 | | Plus |
3L | 22278052..22278731 | 17..696 | 100 | -> | Plus |
3L | 22278823..22279044 | 697..918 | 100 | -> | Plus |
3L | 22279108..22279559 | 919..1370 | 99 | -> | Plus |
3L | 22279614..22279936 | 1371..1693 | 100 | -> | Plus |
3L | 22281679..22281783 | 1694..1798 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:45 Download gff for
BS13713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22275662..22275932 | 1799..2069 | 100 | -> | Plus |
arm_3L | 22276004..22276198 | 2070..2264 | 100 | | Plus |
arm_3L | 22271152..22271831 | 17..696 | 100 | -> | Plus |
arm_3L | 22271923..22272144 | 697..918 | 100 | -> | Plus |
arm_3L | 22272208..22272659 | 919..1370 | 99 | -> | Plus |
arm_3L | 22272714..22273036 | 1371..1693 | 100 | -> | Plus |
arm_3L | 22274779..22274883 | 1694..1798 | 100 | -> | Plus |
BS13713.3prime Sequence
586 bp (517 high quality bases) assembled on 2006-10-13
> BS13713.3prime
ATGGTCTAGAAAGCTTTTAGACGAACTCCTCCTGCTCCAACCACGGATGC
TGCAGGCACTCCGCTGCCGACGCCCGTATAACCGGATTGTACTCAAGCAT
GGGCAGCAGAAAGTCGGAGAACTTCTTGGCCTCCACCGGGTCCCAGTCGT
ACTTCTCCACCAGCACGTTCATTAGACTCCAGGGCTTCAGCTTGGTGATG
TTCCTCAGGCTACCATAGCTGGTGAAGTACTTCAGCCCGTGCTTACCGCG
GAAGATCACCGACTGCGGTATGGAGCCCAGCAGCTCCACAATATGCGCCA
AGTGGTCCTCGTCCCGACTGTAAGACTCTCCGGCGTGAGGGTCGAACAGG
TAGTCGCCGGTGGCCAGCTCGAAGGCCAAACAGGCTGTGCTCCAGATGTC
GGCGGTATAATTGTACGGCGCTCCCAAAAGAACCTCGATTGATCGATACT
GGCGAGTCTGAATGTCCTCAGTAAAGTGATGGTAGTCGTAGCAGGCGTTC
CCCAAGTCGGCGATCTTTACCCGAACGTTGCTGTTGTCAATGAGCGACTG
GATCGTGTAGGTGTTGTTCTGGCTACCCTGACTCTG
BS13713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11489-PB | 2250 | CG11489-RB | 1681..2250 | 586..17 | 2825 | 99.8 | Minus |
CG11489-PC | 2451 | CG11489-RC | 1882..2451 | 586..17 | 2825 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srpk79D-RO | 3771 | CG11489-RO | 2020..2589 | 586..17 | 2835 | 99.8 | Minus |
srpk79D-RN | 3930 | CG11489-RN | 2179..2748 | 586..17 | 2835 | 99.8 | Minus |
srpk79D-RM | 4765 | CG11489-RM | 2961..3530 | 586..17 | 2835 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22282562..22282836 | 484..210 | 1375 | 100 | Minus |
3L | 28110227 | 3L | 22282903..22283100 | 214..17 | 990 | 100 | Minus |
3L | 28110227 | 3L | 22281682..22281783 | 586..485 | 495 | 99 | Minus |
2R | 25286936 | 2R | 15384892..15385158 | 531..265 | 285 | 73.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:40:51 has no hits.
BS13713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:08 Download gff for
BS13713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11489-PC | 1882..2451 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:54 Download gff for
BS13713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RM | 2961..3533 | 14..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:32 Download gff for
BS13713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RM | 2961..3533 | 14..586 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:32 Download gff for
BS13713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22281682..22281783 | 485..586 | 99 | -> | Minus |
3L | 22282562..22282832 | 214..484 | 100 | -> | Minus |
3L | 22282904..22283103 | 14..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:54 Download gff for
BS13713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22274782..22274883 | 485..586 | 99 | -> | Minus |
arm_3L | 22275662..22275932 | 214..484 | 100 | -> | Minus |
arm_3L | 22276004..22276203 | 14..213 | 99 | | Minus |
BS13713.5prime Sequence
631 bp (496 high quality bases) assembled on 2006-10-13
> BS13713.5prime
GAAGTTATCAGTCGACATGGATGACTTTGGCTCGACCGCATCCGACTTGG
AAGAGGCCACCTGCCCCATGCAGGCCAATGCCACGTTCAGCATCGATTGG
CGAGTGACCCTGCTGGACCACTGGTTGGATCTCTATCTTGGCTACATGAA
CCGCCTACACATGCTGCTATCACTAGCCGGCAGGCTGCATCTTCTAAGCC
GGCACATCCTGGGTACTCTCGGCCAGGATCCGATTTTTATGGGTGTGCTG
CAGGGCAGCCTGTTAATGCTCTTCCTCTTCCTGATGCACCTGCTGCGGCT
GTGGAGCTGTGGATACGCAGTTGAGCGGCCGCTGAACCCCACTCCGGACG
TGGCAAAAGAGCTGAGCTGCGACTTCAACTTCGTCTCCGAGCAAGAGAAG
CGAGCTGCCCAAGAAGCCGCGACGGAGGCTCTGCTAGAGGTTGAGGAGAA
GAAGCGCCGCAAGCGGTTTACAAAGAAGCGCAACTGCGTGTCCGCCGGGC
CGATCCTTATTGCCTTGCGCCATCAGTCTAAGCGACCAAAGCACCATCGT
CACGCTGCTCTACCCTTTGAGCCCGTTACCCCCGGGGAAATAATCCTGGA
TACCTACTTGCCGCCGCGGGAACTGCCGCTC
BS13713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11489-PB | 2250 | CG11489-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srpk79D-RO | 3771 | CG11489-RO | 340..954 | 17..631 | 3075 | 100 | Plus |
srpk79D-RN | 3930 | CG11489-RN | 340..954 | 17..631 | 3075 | 100 | Plus |
srpk79D-RM | 4765 | CG11489-RM | 678..1292 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22278052..22278666 | 17..631 | 3075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:09:44 has no hits.
BS13713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:08 Download gff for
BS13713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11489-PB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:08 Download gff for
BS13713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RM | 666..1292 | 7..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:07 Download gff for
BS13713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
srpk79D-RM | 666..1292 | 7..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:07 Download gff for
BS13713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22278040..22278666 | 7..631 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:08 Download gff for
BS13713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22271140..22271766 | 7..631 | 99 | | Plus |
BS13713.pep Sequence
Translation from 16 to 2265
> BS13713.pep
MDDFGSTASDLEEATCPMQANATFSIDWRVTLLDHWLDLYLGYMNRLHML
LSLAGRLHLLSRHILGTLGQDPIFMGVLQGSLLMLFLFLMHLLRLWSCGY
AVERPLNPTPDVAKELSCDFNFVSEQEKRAAQEAATEALLEVEEKKRRKR
FTKKRNCVSAGPILIALRHQSKRPKHHRHAALPFEPVTPGEIILDTYLPP
RELPLTIRLPQLAEPVKEEEVEYIELKSEPRGTLSTTDEIYPDSSDSSLY
VSDEEQEDASQYCRGGYHPVVIGDIFDNRFRVVRKLGWGHFSTVWLCRDL
KDEKYVALKVVKSAPHYIETAADEIRLLEAIRDADPMDVKRERIVRLMNH
FTVRGVNGMHTCLVFEALGCSLYKLIVKNNYQGLAIAQVRNIIRQVLEGL
DYLHSKCSIIHTDIKPENILLVIDNAAAMNQQIDDEINSLRVKGVDFPDS
YISSIEKQTKSRAKWPLIEPNGSTNTNTNTSNSTATNSNSSTPLAAVIMS
TLDKEDTTTTTSSTLNSNTTSSLASKYSSLLGDSECNGGLGGSANINNRY
RTEKKITAKNQSQSSQNNTYTIQSLIDNSNVRVKIADLGNACYDYHHFTE
DIQTRQYRSIEVLLGAPYNYTADIWSTACLAFELATGDYLFDPHAGESYS
RDEDHLAHIVELLGSIPQSVIFRGKHGLKYFTSYGSLRNITKLKPWSLMN
VLVEKYDWDPVEAKKFSDFLLPMLEYNPVIRASAAECLQHPWLEQEEFV*
BS13713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
srpk79D-PO | 749 | CG11489-PO | 1..749 | 1..749 | 3909 | 100 | Plus |
srpk79D-PB | 749 | CG11489-PB | 1..749 | 1..749 | 3909 | 100 | Plus |
srpk79D-PN | 802 | CG11489-PN | 1..802 | 1..749 | 3845 | 93.4 | Plus |
srpk79D-PE | 802 | CG11489-PE | 1..802 | 1..749 | 3845 | 93.4 | Plus |
srpk79D-PI | 898 | CG11489-PI | 1..587 | 1..581 | 2914 | 96.8 | Plus |