Clone Sequence Records
BS13714.3prime Sequence
653 bp (576 high quality bases) assembled on 2006-10-13
> BS13714.3prime
ATGGTCTAGAAAGCTTTCAATGATGGGATGAAATGGTAGATCGGTTATAA
TAATGGCGGATAACGCGCCGACCGAGAATGGAGCGAACGTCCTTGGTGAA
GCGCAGGGCATCGAGGAAGGGCAGCATCTTCAGGAGCTCCGTGTCGTCGG
GGTCGTAGATGAAGGTCTTAATGGGAATAGCGTTGTCGGGAAAGTCGCGG
TATGCGTACGGCGAGTTGTCGATGATTAAAACGCCGCTCATGTCAGGGGT
GACCAATGTCAGGTCCTTGGAGACCATTGGCGAGGAGGCTCGACAGTGCT
GGCGATAGAAGCGGCGAGTAATCAATCCTCGCCCCGCGTCCAGATGGTCC
ACAACCTGGGCGGCATAGACCTCCAGGCTGGCCGTATAGATCACCAGGTC
GTACCACTTGGACACAAAGTCCAGGAACTCGTCTACATGCGGCCGCTTGA
AGACCCGGAAAACGATAGGTTCCATCCCGTCGATGGAAATATTGAGCACA
TAGTCCGGTTGTGCGTGTTCGGGCAACTGGCTGCATCCCACGTTGTCGTG
GGTGTCCGGATCGAGGTAACATGAGTGCACCAGAGTCTCATCCAGGTCCA
GGACCAGGGTCTTCCGACCACCACGGCCAGTCTGTGGGCCATGTCCTGGG
ACA
BS13714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-PA | 882 | CG8584-RA | 283..882 | 616..17 | 2975 | 99.8 | Minus |
| CG8584-PA | 882 | CG8584-RA | 245..278 | 653..620 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-RA | 1103 | CG8584-RA | 411..1049 | 653..16 | 3140 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8700746..8701384 | 16..653 | 3115 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:11 has no hits.
BS13714.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:08 Download gff for
BS13714.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-PA | 246..882 | 17..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:29 Download gff for
BS13714.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 412..1056 | 9..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:14 Download gff for
BS13714.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 412..1056 | 9..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:14 Download gff for
BS13714.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8700739..8701383 | 9..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:29 Download gff for
BS13714.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4588244..4588888 | 9..652 | 99 | | Plus |
BS13714.5prime Sequence
639 bp (623 high quality bases) assembled on 2006-10-13
> BS13714.5prime
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAAT
BS13714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-PA | 882 | CG8584-RA | 1..623 | 17..639 | 3040 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-RA | 1103 | CG8584-RA | 167..789 | 17..639 | 3070 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8701006..8701628 | 639..17 | 3070 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:25 has no hits.
BS13714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:09 Download gff for
BS13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-PA | 1..623 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:29 Download gff for
BS13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..789 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:45 Download gff for
BS13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..789 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:45 Download gff for
BS13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8701006..8701628 | 17..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:29 Download gff for
BS13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4588511..4589133 | 17..639 | 99 | | Minus |
BS13714.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637508
> BS13714.complete
GAAGTTATCAGTCGACATGGTCAGTCAGCTGCCCGCACAGTCTGCTGATT
TAGACAAGCTCGCTCCATCAGGTCAGTTTGCCGTCGCTGTGGTCAGCAAT
CTCCAGAGATCGCGTTCGAGCTCCGATCGCCGGGGGCTCGTCTTGATCCT
GCTCTCCAGCGACCTGGGCACCTACATCAGACGCCTGCTGGCCCGTGTGG
CGGAGAAGGCATGTACGATCCTACGTACATATCTGGGGCTTAGCTACCGG
GAAGTGTCTGTGTCCCAGGACATGGCCCACAGACTGGCCGTGGTTGGTCG
GAAGACCCTGGTCCTGGACCTGGATGAGACTCTGGTGCACTCATGTTACC
TCGATCCGGACACCCACGACAACGTGGGATGCAGCCAGTTGCCCGAACAC
GCACAACCGGACTATGTGCTCAATATTTCCATCGACGGGATGGAACCTAT
CGTTTTCCGGGTCTTCAAGCGGCCGCATGTAGACGAGTTCCTGGACTTTG
TGTCCAAGTGGTACGACCTGGTGATCTATACGGCCAGCCTGGAGGTCTAT
GCCGCCCAGGTTGTGGACCATCTGGACGCGGGGCGAGGATTGATTACTCG
CCGCTTCTATCGCCAGCACTGTCGAGCCTCCTCGCCAATGGTCTCCAAGG
ACCTGACATTGGTCACCCCTGACATGAGCGGCGTTTTAATCATCGACAAC
TCGCCGTACGCATACCGCGACTTTCCCGACAACGCTATTCCCATTAAGAC
CTTCATCTACGACCCCGACGACACGGAGCTCCTGAAGATGCTGCCCTTCC
TCGATGCCCTGCGCTTCACCAAGGACGTTCGCTCCATTCTCGGTCGGCGC
GTTATCCGCCATTATTATAACCGATCTACCATTTCATCCCATCATTGAAA
GCTTTCTAGACCAT
BS13714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-RA | 882 | CG8584-PA | 1..882 | 17..898 | 4365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-RA | 1103 | CG8584-RA | 167..1049 | 17..899 | 4370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8700746..8701628 | 899..17 | 4370 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:51:54 has no hits.
BS13714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:18 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:45 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..1056 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:35 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..1047 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:18 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..1056 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:45 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8584-RA | 167..1047 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:45 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8700748..8701628 | 17..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:35 Download gff for
BS13714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4588253..4589133 | 17..897 | 99 | | Minus |
BS13714.pep Sequence
Translation from 16 to 897
> BS13714.pep
MVSQLPAQSADLDKLAPSGQFAVAVVSNLQRSRSSSDRRGLVLILLSSDL
GTYIRRLLARVAEKACTILRTYLGLSYREVSVSQDMAHRLAVVGRKTLVL
DLDETLVHSCYLDPDTHDNVGCSQLPEHAQPDYVLNISIDGMEPIVFRVF
KRPHVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGLITRRFYRQ
HCRASSPMVSKDLTLVTPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDP
DDTELLKMLPFLDALRFTKDVRSILGRRVIRHYYNRSTISSHH*
BS13714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8584-PA | 293 | CG8584-PA | 1..293 | 1..293 | 1502 | 100 | Plus |
| Dd-PB | 240 | CG1696-PB | 31..237 | 69..282 | 526 | 50.7 | Plus |
| Dd-PA | 243 | CG1696-PA | 37..240 | 72..282 | 520 | 50.9 | Plus |
| CG12078-PB | 236 | CG12078-PB | 20..227 | 63..277 | 370 | 40.3 | Plus |
| CG12078-PA | 253 | CG12078-PA | 37..244 | 63..277 | 370 | 40.3 | Plus |
