Clone Sequence Records
BS13721.3prime Sequence
795 bp (715 high quality bases) assembled on 2006-10-13
> BS13721.3prime
ATGGTCTAGAAAGCTTCTAGCCTTGCTTTAATTTCTGTTGATTTAGGAGC
TTAAACTCCGGACCCCAAACGACGTTGTTGGCGAACTCCCCGAGCAGATA
GCAAACCAGGTTGAACCCCACAAGTAGTGCCAAGAACACGTAGCGCAGGT
ATGCGGGCAGCACTTCCAGAATGGGATACACCCACTCGCCACTGAAGTAG
CGAACAATGTGCAGCCAGATGATGTAAAGCAGGATGAAGGAGACGTTGCC
CGTGATGCCTGCCAATCGACTCGGATAGCGGCGGAAGCAGGTAAACAGGT
CCATAATGGCCAAAAGGGCCACATTCGTGTGTACCACGTGATTCAACCAG
CTGGGGAAAATCGCATCCAGCGCTGAGGGAAAGATGAGCTCACGGTCCCA
CACGTAGATGACCCAAAACGAGAGGCAGACATTGTGGGCGACAGGAAAGG
CAAAGGCGGCGAACACATAGTCCCTCACCGATCGCAACATGGATTTTGAA
TCCCCGGAGACATTGTTATCGCCGAAGAGATCGTTCAGCAGAGCCAATGA
GTGGTAGATGGCCTGTAGAATGACGTCCAAGAAGGTAAGGTACTTGAACT
TGCCGCCCCACCGCGCCTTCAGTTCATCCTCGTCTAGCAAATCCGTGGGC
CAATGCACCCGGAAGTAGTGAAAGTATATCCCATACGAAAACTGCGCTGC
CGCCAGGAGATGGACCAGGAATCTCAGGTATTTGAAGGCACCGCTCGTAT
AGGCATCGTTGCAAGTGTTCAACTGGGCTTTAGTGGCCTCGACAG
BS13721.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PA | 828 | CG11601-RA | 50..828 | 795..17 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 98..876 | 795..17 | 3895 | 100 | Minus |
CG11601-RB | 1077 | CG11601-RB | 98..876 | 795..17 | 3895 | 100 | Minus |
CG11601-RA | 1151 | CG11601-RA | 172..950 | 795..17 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283098 | 351..795 | 2225 | 100 | Plus |
2L | 23513712 | 2L | 282172..282508 | 17..353 | 1685 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:48:31 has no hits.
BS13721.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:18 Download gff for
BS13721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 50..828 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:31 Download gff for
BS13721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 172..954 | 12..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:20 Download gff for
BS13721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 172..954 | 12..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:20 Download gff for
BS13721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282168..282505 | 12..350 | 99 | <- | Plus |
2L | 282654..283098 | 351..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:31 Download gff for
BS13721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282168..282505 | 12..350 | 99 | <- | Plus |
arm_2L | 282654..283098 | 351..795 | 100 | | Plus |
BS13721.5prime Sequence
784 bp (743 high quality bases) assembled on 2006-10-13
> BS13721.5prime
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGGTTCA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAAC
BS13721.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PA | 828 | CG11601-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG11601-PA | 828 | CG11601-RA | 734..768 | 750..784 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 49..816 | 17..784 | 3795 | 99.7 | Plus |
CG11601-RB | 1077 | CG11601-RB | 49..816 | 17..784 | 3795 | 99.7 | Plus |
CG11601-RA | 1151 | CG11601-RA | 123..890 | 17..784 | 3795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283147 | 510..17 | 2470 | 100 | Minus |
2L | 23513712 | 2L | 282232..282508 | 784..508 | 1340 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:30:18 has no hits.
BS13721.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:18 Download gff for
BS13721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:17 Download gff for
BS13721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..890 | 10..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:24 Download gff for
BS13721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 118..890 | 10..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:24 Download gff for
BS13721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282232..282505 | 511..784 | 99 | <- | Minus |
2L | 282654..283152 | 10..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:17 Download gff for
BS13721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282232..282505 | 511..784 | 99 | <- | Minus |
arm_2L | 282654..283152 | 10..510 | 99 | | Minus |
BS13721.complete Sequence
860 bp assembled on 2006-11-01
GenBank Submission: FJ637509
> BS13721.complete
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGTTCAA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAACAACGTCGTTTGGGGTC
CGGAGTTTAAGCTCCTAAATCAACAGAAATTAAAGCAAGGCTAGAAGCTT
TCTAGACCAT
BS13721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 828 | CG11601-PC | 1..828 | 17..844 | 4140 | 100 | Plus |
CG11601-RB | 828 | CG11601-PB | 1..828 | 17..844 | 4140 | 100 | Plus |
CG11601-RA | 828 | CG11601-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-RC | 1378 | CG11601-RC | 49..876 | 17..844 | 4140 | 100 | Plus |
CG11601-RB | 1077 | CG11601-RB | 49..876 | 17..844 | 4140 | 100 | Plus |
CG11601-RA | 1151 | CG11601-RA | 123..950 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 282654..283147 | 510..17 | 2470 | 100 | Minus |
2L | 23513712 | 2L | 282172..282508 | 844..508 | 1685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:05 has no hits.
BS13721.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:19 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:43 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 130..966 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:42 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 123..950 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:20 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 130..966 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:36 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11601-RA | 123..950 | 17..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:36 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 282172..282505 | 511..844 | 100 | <- | Minus |
2L | 282654..283147 | 17..510 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:42 Download gff for
BS13721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 282654..283147 | 17..510 | 100 | | Minus |
arm_2L | 282172..282505 | 511..844 | 100 | <- | Minus |
BS13721.pep Sequence
Translation from 16 to 843
> BS13721.pep
MGKSKKQVREFNAAKEAVEATKAQLNTCNDAYTSGAFKYLRFLVHLLAAA
QFSYGIYFHYFRVHWPTDLLDEDELKARWGGKFKYLTFLDVILQAIYHSL
ALLNDLFGDNNVSGDSKSMLRSVRDYVFAAFAFPVAHNVCLSFWVIYVWD
RELIFPSALDAIFPSWLNHVVHTNVALLAIMDLFTCFRRYPSRLAGITGN
VSFILLYIIWLHIVRYFSGEWVYPILEVLPAYLRYVFLALLVGFNLVCYL
LGEFANNVVWGPEFKLLNQQKLKQG*
BS13721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11601-PC | 275 | CG11601-PC | 1..275 | 1..275 | 1459 | 100 | Plus |
CG11601-PB | 275 | CG11601-PB | 1..275 | 1..275 | 1459 | 100 | Plus |
CG11601-PA | 275 | CG11601-PA | 1..275 | 1..275 | 1459 | 100 | Plus |
CG3625-PB | 248 | CG3625-PB | 7..246 | 29..270 | 638 | 48.4 | Plus |
CG3625-PA | 245 | CG3625-PA | 8..243 | 26..270 | 572 | 42.9 | Plus |