Clone BS13721 Report

Search the DGRC for BS13721

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG11601-RA
Protein status:BS13721.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13721.3prime Sequence

795 bp (715 high quality bases) assembled on 2006-10-13

> BS13721.3prime
ATGGTCTAGAAAGCTTCTAGCCTTGCTTTAATTTCTGTTGATTTAGGAGC
TTAAACTCCGGACCCCAAACGACGTTGTTGGCGAACTCCCCGAGCAGATA
GCAAACCAGGTTGAACCCCACAAGTAGTGCCAAGAACACGTAGCGCAGGT
ATGCGGGCAGCACTTCCAGAATGGGATACACCCACTCGCCACTGAAGTAG
CGAACAATGTGCAGCCAGATGATGTAAAGCAGGATGAAGGAGACGTTGCC
CGTGATGCCTGCCAATCGACTCGGATAGCGGCGGAAGCAGGTAAACAGGT
CCATAATGGCCAAAAGGGCCACATTCGTGTGTACCACGTGATTCAACCAG
CTGGGGAAAATCGCATCCAGCGCTGAGGGAAAGATGAGCTCACGGTCCCA
CACGTAGATGACCCAAAACGAGAGGCAGACATTGTGGGCGACAGGAAAGG
CAAAGGCGGCGAACACATAGTCCCTCACCGATCGCAACATGGATTTTGAA
TCCCCGGAGACATTGTTATCGCCGAAGAGATCGTTCAGCAGAGCCAATGA
GTGGTAGATGGCCTGTAGAATGACGTCCAAGAAGGTAAGGTACTTGAACT
TGCCGCCCCACCGCGCCTTCAGTTCATCCTCGTCTAGCAAATCCGTGGGC
CAATGCACCCGGAAGTAGTGAAAGTATATCCCATACGAAAACTGCGCTGC
CGCCAGGAGATGGACCAGGAATCTCAGGTATTTGAAGGCACCGCTCGTAT
AGGCATCGTTGCAAGTGTTCAACTGGGCTTTAGTGGCCTCGACAG

BS13721.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-PA 828 CG11601-RA 50..828 795..17 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-RC 1378 CG11601-RC 98..876 795..17 3895 100 Minus
CG11601-RB 1077 CG11601-RB 98..876 795..17 3895 100 Minus
CG11601-RA 1151 CG11601-RA 172..950 795..17 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 282654..283098 351..795 2225 100 Plus
2L 23513712 2L 282172..282508 17..353 1685 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:48:31 has no hits.

BS13721.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:18 Download gff for BS13721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-PA 50..828 17..795 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:31 Download gff for BS13721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 172..954 12..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:20 Download gff for BS13721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 172..954 12..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:20 Download gff for BS13721.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 282168..282505 12..350 99 <- Plus
2L 282654..283098 351..795 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:31 Download gff for BS13721.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 282168..282505 12..350 99 <- Plus
arm_2L 282654..283098 351..795 100   Plus

BS13721.5prime Sequence

784 bp (743 high quality bases) assembled on 2006-10-13

> BS13721.5prime
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGGTTCA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAAC

BS13721.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-PA 828 CG11601-RA 1..729 17..745 3645 100 Plus
CG11601-PA 828 CG11601-RA 734..768 750..784 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-RC 1378 CG11601-RC 49..816 17..784 3795 99.7 Plus
CG11601-RB 1077 CG11601-RB 49..816 17..784 3795 99.7 Plus
CG11601-RA 1151 CG11601-RA 123..890 17..784 3795 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 282654..283147 510..17 2470 100 Minus
2L 23513712 2L 282232..282508 784..508 1340 98.9 Minus
Blast to na_te.dros performed on 2015-02-11 17:30:18 has no hits.

BS13721.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:18 Download gff for BS13721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:17 Download gff for BS13721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 118..890 10..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:24 Download gff for BS13721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 118..890 10..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:24 Download gff for BS13721.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 282232..282505 511..784 99 <- Minus
2L 282654..283152 10..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:17 Download gff for BS13721.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 282232..282505 511..784 99 <- Minus
arm_2L 282654..283152 10..510 99   Minus

BS13721.complete Sequence

860 bp assembled on 2006-11-01

GenBank Submission: FJ637509

> BS13721.complete
GAAGTTATCAGTCGACATGGGCAAGAGCAAGAAGCAGGTGCGCGAGTTCA
ACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAACACTTGC
AACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCTGGTCCA
TCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACTACTTCC
GGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAGGCGCGG
TGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCTACAGGC
CATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATAACAATG
TCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTATGTGTTC
GCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTTTTGGGT
CATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGGATGCGA
TTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCCCTTTTG
GCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCGATTGGC
AGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCTGGCTGC
ACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTGGAAGTG
CTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGGGTTCAA
CCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAACAACGTCGTTTGGGGTC
CGGAGTTTAAGCTCCTAAATCAACAGAAATTAAAGCAAGGCTAGAAGCTT
TCTAGACCAT

BS13721.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-RC 828 CG11601-PC 1..828 17..844 4140 100 Plus
CG11601-RB 828 CG11601-PB 1..828 17..844 4140 100 Plus
CG11601-RA 828 CG11601-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-RC 1378 CG11601-RC 49..876 17..844 4140 100 Plus
CG11601-RB 1077 CG11601-RB 49..876 17..844 4140 100 Plus
CG11601-RA 1151 CG11601-RA 123..950 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 282654..283147 510..17 2470 100 Minus
2L 23513712 2L 282172..282508 844..508 1685 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:05 has no hits.

BS13721.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:19 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:43 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 130..966 10..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:42 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 123..950 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:20 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 130..966 10..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:36 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 123..950 17..844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:36 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 282172..282505 511..844 100 <- Minus
2L 282654..283147 17..510 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:42 Download gff for BS13721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 282654..283147 17..510 100   Minus
arm_2L 282172..282505 511..844 100 <- Minus

BS13721.pep Sequence

Translation from 16 to 843

> BS13721.pep
MGKSKKQVREFNAAKEAVEATKAQLNTCNDAYTSGAFKYLRFLVHLLAAA
QFSYGIYFHYFRVHWPTDLLDEDELKARWGGKFKYLTFLDVILQAIYHSL
ALLNDLFGDNNVSGDSKSMLRSVRDYVFAAFAFPVAHNVCLSFWVIYVWD
RELIFPSALDAIFPSWLNHVVHTNVALLAIMDLFTCFRRYPSRLAGITGN
VSFILLYIIWLHIVRYFSGEWVYPILEVLPAYLRYVFLALLVGFNLVCYL
LGEFANNVVWGPEFKLLNQQKLKQG*

BS13721.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-PC 275 CG11601-PC 1..275 1..275 1459 100 Plus
CG11601-PB 275 CG11601-PB 1..275 1..275 1459 100 Plus
CG11601-PA 275 CG11601-PA 1..275 1..275 1459 100 Plus
CG3625-PB 248 CG3625-PB 7..246 29..270 638 48.4 Plus
CG3625-PA 245 CG3625-PA 8..243 26..270 572 42.9 Plus