Clone BS13723 Report

Search the DGRC for BS13723

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptDecay-RA
Protein status:BS13723.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13723.3prime Sequence

628 bp (491 high quality bases) assembled on 2006-10-13

> BS13723.3prime
ATGGTCTAGAAAGCTTTCAGGTCTTGGGCTTAACACGCAGCTGGAATGTT
TTGGTCAGTGTCGACATAAAGTTGGGCATTTCCTTCATCTGGTTGAGGGC
CTCGTTCTTCGTATTCGACTGGTACTCGTAGGCCACCTTCCGATTCACTG
CGGTCAGCAGGCGGAGTAGCTCGACGCCCTCCGGCGTGGCAGCTTCGTTG
GCGGCGGCCTGGTCGAGGACGCGGCACAAGCTCTGGATGAACCAGGAGCC
ATCGTCAACGTTACGGAATGAGAAGAATTTGTCGAATGTGGAGTAGAAGA
CGAGGATGTCCGCCGTGCTGGGAATGGCATAGGTGATGGGCTGAACGGCG
GCAGCGGGCTCCGGGACCAGTTCCCTGGTCATCACAGCGAAGCTGGAGAA
CTCGACTGCCTTTTCCAGGTTGGCTCCGCGACAGGCCTGGATGAAGAAGA
GTTTGGGTTTGTTCTTGAGCGTCTTGCAGTTGTCGCCGAGGAAGGGATTC
CAAAGGCGCTCCACAGGATATGACATGTCCTTAGCGTAGACCTTGCCTTC
GGTGCCGTGTGACATCACCGCCAACACAAAGCAGTCGTTTTGACTGTGAT
CCTCGCGAGCAACCTCTTTTGAGCGTGT

BS13723.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14902-PA 927 decay-RA 325..927 619..17 2965 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 364..974 628..17 3005 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16499763..16500096 280..613 1655 99.7 Plus
3R 32079331 3R 16499195..16499457 17..279 1300 99.6 Plus
Blast to na_te.dros performed on 2015-02-03 06:38:46 has no hits.

BS13723.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:20 Download gff for BS13723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14902-PA 317..927 17..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:58 Download gff for BS13723.3prime
Subject Subject Range Query Range Percent Splice Strand
decay-RA 364..977 12..628 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:18 Download gff for BS13723.3prime
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 364..977 12..628 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:18 Download gff for BS13723.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16499192..16499457 12..279 98 <- Plus
3R 16499763..16500096 280..613 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:58 Download gff for BS13723.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12324914..12325179 12..279 98 <- Plus
arm_3R 12325485..12325818 280..613 99   Plus

BS13723.5prime Sequence

641 bp (544 high quality bases) assembled on 2006-10-13

> BS13723.5prime
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCA

BS13723.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14902-PA 927 decay-RA 1..625 17..641 3100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 48..672 17..641 3110 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16500673..16501003 347..17 1655 100 Minus
3R 32079331 3R 16499802..16500096 641..347 1460 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:03:28 has no hits.

BS13723.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:20 Download gff for BS13723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14902-PA 1..624 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:02 Download gff for BS13723.5prime
Subject Subject Range Query Range Percent Splice Strand
decay-RA 41..671 11..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:57 Download gff for BS13723.5prime
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 41..671 11..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:57 Download gff for BS13723.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16499803..16500095 348..640 99 <- Minus
3R 16500673..16501010 11..347 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:02 Download gff for BS13723.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12325525..12325817 348..640 99 <- Minus
arm_3R 12326395..12326732 11..347 99   Minus

BS13723.complete Sequence

959 bp assembled on 2006-11-01

GenBank Submission: FJ637510

> BS13723.complete
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTATGTCGAC
ACTGACCAAAACATTCCAGCTGCGTGTTAAGCCCAAGACCTGAAAGCTTT
CTAGACCAT

BS13723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 927 CG14902-PA 1..927 17..943 4605 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-RA 1111 CG14902-RA 48..974 17..943 4605 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16499763..16500096 680..347 1655 99.7 Minus
3R 32079331 3R 16500673..16501003 347..17 1655 100 Minus
3R 32079331 3R 16499195..16499457 943..681 1300 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:29:45 has no hits.

BS13723.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:20 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:46 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 663..1599 11..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:17 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 48..973 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:21 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 663..1599 11..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:44 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 48..973 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:44 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16499763..16500095 348..680 99 <- Minus
3R 16500673..16501003 17..347 100   Minus
3R 16499196..16499457 681..942 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:17 Download gff for BS13723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12324918..12325179 681..942 99 <- Minus
arm_3R 12325485..12325817 348..680 99 <- Minus
arm_3R 12326395..12326725 17..347 100   Minus

BS13723.pep Sequence

Translation from 16 to 942

> BS13723.pep
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKT*

BS13723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-PA 308 CG14902-PA 1..308 1..308 1599 100 Plus
Dcp-1-PA 323 CG5370-PA 47..317 22..306 410 34 Plus
Drice-PA 339 CG7788-PA 94..331 56..305 405 35.6 Plus
Dronc-PA 450 CG8091-PA 196..397 56..243 186 27.3 Plus
Strica-PB 527 CG7863-PB 317..484 60..246 185 31.1 Plus