Clone Sequence Records
BS13723.3prime Sequence
628 bp (491 high quality bases) assembled on 2006-10-13
> BS13723.3prime
ATGGTCTAGAAAGCTTTCAGGTCTTGGGCTTAACACGCAGCTGGAATGTT
TTGGTCAGTGTCGACATAAAGTTGGGCATTTCCTTCATCTGGTTGAGGGC
CTCGTTCTTCGTATTCGACTGGTACTCGTAGGCCACCTTCCGATTCACTG
CGGTCAGCAGGCGGAGTAGCTCGACGCCCTCCGGCGTGGCAGCTTCGTTG
GCGGCGGCCTGGTCGAGGACGCGGCACAAGCTCTGGATGAACCAGGAGCC
ATCGTCAACGTTACGGAATGAGAAGAATTTGTCGAATGTGGAGTAGAAGA
CGAGGATGTCCGCCGTGCTGGGAATGGCATAGGTGATGGGCTGAACGGCG
GCAGCGGGCTCCGGGACCAGTTCCCTGGTCATCACAGCGAAGCTGGAGAA
CTCGACTGCCTTTTCCAGGTTGGCTCCGCGACAGGCCTGGATGAAGAAGA
GTTTGGGTTTGTTCTTGAGCGTCTTGCAGTTGTCGCCGAGGAAGGGATTC
CAAAGGCGCTCCACAGGATATGACATGTCCTTAGCGTAGACCTTGCCTTC
GGTGCCGTGTGACATCACCGCCAACACAAAGCAGTCGTTTTGACTGTGAT
CCTCGCGAGCAACCTCTTTTGAGCGTGT
BS13723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14902-PA | 927 | decay-RA | 325..927 | 619..17 | 2965 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 364..974 | 628..17 | 3005 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16499763..16500096 | 280..613 | 1655 | 99.7 | Plus |
3R | 32079331 | 3R | 16499195..16499457 | 17..279 | 1300 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:38:46 has no hits.
BS13723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:20 Download gff for
BS13723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14902-PA | 317..927 | 17..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:58 Download gff for
BS13723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 364..977 | 12..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:18 Download gff for
BS13723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 364..977 | 12..628 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:18 Download gff for
BS13723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499192..16499457 | 12..279 | 98 | <- | Plus |
3R | 16499763..16500096 | 280..613 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:58 Download gff for
BS13723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12324914..12325179 | 12..279 | 98 | <- | Plus |
arm_3R | 12325485..12325818 | 280..613 | 99 | | Plus |
BS13723.5prime Sequence
641 bp (544 high quality bases) assembled on 2006-10-13
> BS13723.5prime
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCA
BS13723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14902-PA | 927 | decay-RA | 1..625 | 17..641 | 3100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 48..672 | 17..641 | 3110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16500673..16501003 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 16499802..16500096 | 641..347 | 1460 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:03:28 has no hits.
BS13723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:20 Download gff for
BS13723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14902-PA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:02 Download gff for
BS13723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 41..671 | 11..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:57 Download gff for
BS13723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 41..671 | 11..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:57 Download gff for
BS13723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499803..16500095 | 348..640 | 99 | <- | Minus |
3R | 16500673..16501010 | 11..347 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:02 Download gff for
BS13723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12325525..12325817 | 348..640 | 99 | <- | Minus |
arm_3R | 12326395..12326732 | 11..347 | 99 | | Minus |
BS13723.complete Sequence
959 bp assembled on 2006-11-01
GenBank Submission: FJ637510
> BS13723.complete
GAAGTTATCAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGA
AGAACAAGCACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACG
CCCACATCGGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAA
CGAGGACACATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGA
ACCACAAGGATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGAT
CGCGATGACATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCAC
CTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTG
CTCGCGAGGATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCA
CACGGCACCGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGA
GCGCCTTTGGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACA
AACCCAAACTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAG
GCAGTCGAGTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGA
GCCCGCTGCCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGG
ACATCCTCGTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAAC
GTTGACGATGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCA
GGCCGCCGCCAACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCC
TGCTGACCGCAGTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACG
AAGAACGAGGCCCTCAACCAGATGAAGGAAATGCCCAACTTTATGTCGAC
ACTGACCAAAACATTCCAGCTGCGTGTTAAGCCCAAGACCTGAAAGCTTT
CTAGACCAT
BS13723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 927 | CG14902-PA | 1..927 | 17..943 | 4605 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-RA | 1111 | CG14902-RA | 48..974 | 17..943 | 4605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16499763..16500096 | 680..347 | 1655 | 99.7 | Minus |
3R | 32079331 | 3R | 16500673..16501003 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 16499195..16499457 | 943..681 | 1300 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:29:45 has no hits.
BS13723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:20 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:46 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 663..1599 | 11..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:17 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 48..973 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:21 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
decay-RA | 663..1599 | 11..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:44 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Decay-RA | 48..973 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:44 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16499763..16500095 | 348..680 | 99 | <- | Minus |
3R | 16500673..16501003 | 17..347 | 100 | | Minus |
3R | 16499196..16499457 | 681..942 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:17 Download gff for
BS13723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12324918..12325179 | 681..942 | 99 | <- | Minus |
arm_3R | 12325485..12325817 | 348..680 | 99 | <- | Minus |
arm_3R | 12326395..12326725 | 17..347 | 100 | | Minus |
BS13723.pep Sequence
Translation from 16 to 942
> BS13723.pep
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKT*
BS13723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Decay-PA | 308 | CG14902-PA | 1..308 | 1..308 | 1599 | 100 | Plus |
Dcp-1-PA | 323 | CG5370-PA | 47..317 | 22..306 | 410 | 34 | Plus |
Drice-PA | 339 | CG7788-PA | 94..331 | 56..305 | 405 | 35.6 | Plus |
Dronc-PA | 450 | CG8091-PA | 196..397 | 56..243 | 186 | 27.3 | Plus |
Strica-PB | 527 | CG7863-PB | 317..484 | 60..246 | 185 | 31.1 | Plus |