Clone BS13726 Report

Search the DGRC for BS13726

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG13602-RA
Protein status:BS13726.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13726.3prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-13

> BS13726.3prime
ATGGTCTAGAAAGCTTTTAAGACATTTGTAATAGTTCACACTTTGAAAGC
TCATAGTATATGAGACCCGCGCCGATGCCAAACACAAAAGCCTCACTCAG
CATATCAGCGCCCAATCTGGTGGCGACCGGAGTGGAGAGGGGTGGAATCC
GCCTGGGCTGCTTTAATCGAAGCATACGAAGCTTGGAACGGACCTCAAAG
GTGTTGTAGAGCTGGGCAGGCGGAATAATGATGTAGCGCCGTATAAAGGG
ATGATGCTTGCCCATCCAAATCAGAAGGTCTCCGAATGGCTTGCTAATCC
GTTTCACGCCATGAATGAAAATTTTTCCAACTGGAAAACTACCAATCACC
ATGTCGACTGATAACT

BS13726.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13602-PA 336 CG13602-RA 1..336 352..17 1655 99.7 Minus
CG13602-PB 807 CG13602-RB 494..807 330..17 1545 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..916 352..17 1665 99.7 Minus
CG43999-RC 1098 CR43999-RC 581..891 352..42 1540 99.7 Minus
CG43998-RD 597 CG43998-RD 80..390 352..42 1540 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927971..23928306 17..352 1665 99.7 Plus
Blast to na_te.dros performed on 2015-01-31 10:10:14 has no hits.

BS13726.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:21 Download gff for BS13726.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 17..352 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:18 Download gff for BS13726.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..925 7..352 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:50 Download gff for BS13726.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..925 7..352 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:50 Download gff for BS13726.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927962..23928306 7..352 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:18 Download gff for BS13726.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753684..19754028 7..352 98   Plus

BS13726.5prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-13

> BS13726.5prime
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTT
AAAAGCTTTCTAGACC

BS13726.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13602-PA 336 CG13602-RA 1..336 17..352 1655 99.7 Plus
CG13602-PB 807 CG13602-RB 494..807 39..352 1545 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..916 17..352 1665 99.7 Plus
CG43999-RC 1098 CR43999-RC 581..891 17..327 1540 99.7 Plus
CG43998-RD 597 CG43998-RD 80..390 17..327 1540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927971..23928306 352..17 1665 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 17:44:50 has no hits.

BS13726.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:21 Download gff for BS13726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13602-PA 1..336 17..352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:34 Download gff for BS13726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..925 17..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:58 Download gff for BS13726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..925 17..362 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:58 Download gff for BS13726.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927962..23928306 17..362 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:34 Download gff for BS13726.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753684..19754028 17..362 98   Minus

BS13726.complete Sequence

368 bp assembled on 2006-11-01

GenBank Submission: FJ637511

> BS13726.complete
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTT
AAAAGCTTTCTAGACCAT

BS13726.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-RD 462 CG43998-PD 1..311 17..327 1540 99.7 Plus
CG43998-RC 462 CG43998-PC 1..311 17..327 1540 99.7 Plus
CG43998-RB 462 CG43998-PB 1..311 17..327 1540 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG43999-RB 1159 CR43999-RB 581..916 17..352 1665 99.7 Plus
CG43999-RC 1098 CR43999-RC 581..891 17..327 1540 99.7 Plus
CG43998-RD 597 CG43998-RD 80..390 17..327 1540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927971..23928306 352..17 1665 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 22:27:28 has no hits.

BS13726.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:22 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..336 17..352 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:49 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 581..925 17..362 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:47 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..914 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:22 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 581..925 17..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:41 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 581..914 17..350 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:41 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927973..23928306 17..350 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:47 Download gff for BS13726.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753695..19754028 17..350 99   Minus

BS13726.pep Sequence

Translation from 16 to 351

> BS13726.pep
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMS*

BS13726.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-PD 153 CG43998-PD 1..104 1..104 540 100 Plus
CG43998-PC 153 CG43998-PC 1..104 1..104 540 100 Plus
CG43998-PB 153 CG43998-PB 1..104 1..104 540 100 Plus
CG13601-PA 255 CG13601-PA 1..104 1..104 233 43.3 Plus
CG13601-PB 277 CG13601-PB 1..104 1..104 233 43.3 Plus