Clone Sequence Records
BS13726.3prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS13726.3prime
ATGGTCTAGAAAGCTTTTAAGACATTTGTAATAGTTCACACTTTGAAAGC
TCATAGTATATGAGACCCGCGCCGATGCCAAACACAAAAGCCTCACTCAG
CATATCAGCGCCCAATCTGGTGGCGACCGGAGTGGAGAGGGGTGGAATCC
GCCTGGGCTGCTTTAATCGAAGCATACGAAGCTTGGAACGGACCTCAAAG
GTGTTGTAGAGCTGGGCAGGCGGAATAATGATGTAGCGCCGTATAAAGGG
ATGATGCTTGCCCATCCAAATCAGAAGGTCTCCGAATGGCTTGCTAATCC
GTTTCACGCCATGAATGAAAATTTTTCCAACTGGAAAACTACCAATCACC
ATGTCGACTGATAACT
BS13726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13602-PA | 336 | CG13602-RA | 1..336 | 352..17 | 1655 | 99.7 | Minus |
CG13602-PB | 807 | CG13602-RB | 494..807 | 330..17 | 1545 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..916 | 352..17 | 1665 | 99.7 | Minus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 352..42 | 1540 | 99.7 | Minus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 352..42 | 1540 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927971..23928306 | 17..352 | 1665 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:10:14 has no hits.
BS13726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:21 Download gff for
BS13726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 17..352 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:18 Download gff for
BS13726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..925 | 7..352 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:50 Download gff for
BS13726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..925 | 7..352 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:50 Download gff for
BS13726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927962..23928306 | 7..352 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:18 Download gff for
BS13726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753684..19754028 | 7..352 | 98 | | Plus |
BS13726.5prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS13726.5prime
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTT
AAAAGCTTTCTAGACC
BS13726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13602-PA | 336 | CG13602-RA | 1..336 | 17..352 | 1655 | 99.7 | Plus |
CG13602-PB | 807 | CG13602-RB | 494..807 | 39..352 | 1545 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..916 | 17..352 | 1665 | 99.7 | Plus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 17..327 | 1540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927971..23928306 | 352..17 | 1665 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:44:50 has no hits.
BS13726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:21 Download gff for
BS13726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:34 Download gff for
BS13726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..925 | 17..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:58 Download gff for
BS13726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..925 | 17..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:58 Download gff for
BS13726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927962..23928306 | 17..362 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:34 Download gff for
BS13726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753684..19754028 | 17..362 | 98 | | Minus |
BS13726.complete Sequence
368 bp assembled on 2006-11-01
GenBank Submission: FJ637511
> BS13726.complete
GAAGTTATCAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTT
TCATTCATGGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATT
TGGATGGGCAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCC
TGCCCAGCTCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTC
GATTAAAGCAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACC
AGATTGGGCGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGC
GGGTCTCATATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTT
AAAAGCTTTCTAGACCAT
BS13726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43998-RD | 462 | CG43998-PD | 1..311 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RC | 462 | CG43998-PC | 1..311 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RB | 462 | CG43998-PB | 1..311 | 17..327 | 1540 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43999-RB | 1159 | CR43999-RB | 581..916 | 17..352 | 1665 | 99.7 | Plus |
CG43999-RC | 1098 | CR43999-RC | 581..891 | 17..327 | 1540 | 99.7 | Plus |
CG43998-RD | 597 | CG43998-RD | 80..390 | 17..327 | 1540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23927971..23928306 | 352..17 | 1665 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:27:28 has no hits.
BS13726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:22 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:49 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 581..925 | 17..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:47 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..914 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:22 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13602-RA | 581..925 | 17..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:41 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43999-RB | 581..914 | 17..350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:41 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927973..23928306 | 17..350 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:47 Download gff for
BS13726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753695..19754028 | 17..350 | 99 | | Minus |
BS13726.pep Sequence
Translation from 16 to 351
> BS13726.pep
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMS*
BS13726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43998-PD | 153 | CG43998-PD | 1..104 | 1..104 | 540 | 100 | Plus |
CG43998-PC | 153 | CG43998-PC | 1..104 | 1..104 | 540 | 100 | Plus |
CG43998-PB | 153 | CG43998-PB | 1..104 | 1..104 | 540 | 100 | Plus |
CG13601-PA | 255 | CG13601-PA | 1..104 | 1..104 | 233 | 43.3 | Plus |
CG13601-PB | 277 | CG13601-PB | 1..104 | 1..104 | 233 | 43.3 | Plus |