Clone BS13727 Report

Search the DGRC for BS13727

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7841-RA
Protein status:BS13727.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13727.3prime Sequence

555 bp (550 high quality bases) assembled on 2006-10-13

> BS13727.3prime
ATGGTCTAGAAAGCTTCTACAGGCTTTTGGTTATGTTCTGGAAGAGGCGA
CGTCCCCACCACGACTCCAGGTCGAAGGGCTTGAAGTCCTGTAGCGCTGG
ACTCGGTGGTTCCACCCAGACAGTGGCTGTTGAGGCAGCGGGCACTGGGC
TGTTGGCCATTATGCTTTCCACTGGACTGGCGGCGCTGTTGTTGTTGGCA
TCCGCTACAGGTTTCTCAACAGGCTTGGCGGATGAGCTCGAGTCGTAGGG
ATTCTGCGCCACCAGCATGTTCCAGGAGTCATTTATGTAACGTATTATTT
CCTCATGTTGCGGCGTTATCACCTCATCCTCGATCAGTTTGGTTGGCGTT
ATCCGCTTGGTGGCGAAGCTCTGTTGAAACACCGGACGCGGTATGTTTTT
GTGCTCCTCGGGACTGTTCAGATCGAAACTAGCGTTCTTGCGGCCGCTCT
CCTTGATGCTTTCGAATTTTTCAAAATTTGGTGCCAGGCCGCGACGCGTT
TTAGCAACAATTTTGCTAGGTCCCTTGTTGATTGTGTACATGTCGACTGA
TAACT

BS13727.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PA 525 CG7841-RA 1..525 541..17 2575 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..927 542..17 2600 99.6 Minus
CG7841-RA 1377 CG7841-RA 402..927 542..17 2600 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505889..15506148 17..276 1270 99.2 Plus
3L 28110227 3L 15506227..15506345 277..395 595 100 Plus
3L 28110227 3L 15507473..15507567 396..490 475 100 Plus
3L 28110227 3L 15507798..15507851 489..542 270 100 Plus
Blast to na_te.dros performed 2015-02-03 06:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 201..142 117 68.3 Minus

BS13727.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for BS13727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 17..541 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:04 Download gff for BS13727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..935 9..549 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:21 Download gff for BS13727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..935 9..549 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:21 Download gff for BS13727.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15507799..15507854 490..549 93   Plus
3L 15506227..15506345 277..395 100 <- Plus
3L 15505881..15506148 9..276 97 <- Plus
3L 15507473..15507566 396..489 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:04 Download gff for BS13727.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498981..15499248 9..276 97 <- Plus
arm_3L 15499327..15499445 277..395 100 <- Plus
arm_3L 15500573..15500666 396..489 100 <- Plus
arm_3L 15500899..15500954 490..549 93   Plus

BS13727.5prime Sequence

555 bp (555 high quality bases) assembled on 2006-10-13

> BS13727.5prime
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGTAGAAGCTTTCT
AGACC

BS13727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PA 525 CG7841-RA 1..525 17..541 2575 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..927 16..541 2600 99.6 Plus
CG7841-RA 1377 CG7841-RA 402..927 16..541 2600 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505889..15506148 541..282 1270 99.2 Minus
3L 28110227 3L 15506227..15506345 281..163 595 100 Minus
3L 28110227 3L 15507473..15507567 162..68 475 100 Minus
3L 28110227 3L 15507798..15507851 69..16 270 100 Minus
Blast to na_te.dros performed 2015-02-12 03:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 357..416 117 68.3 Plus

BS13727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for BS13727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-PA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:38 Download gff for BS13727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..935 9..549 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:26 Download gff for BS13727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 396..935 9..549 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:26 Download gff for BS13727.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15505881..15506148 282..549 97 <- Minus
3L 15506227..15506345 163..281 100 <- Minus
3L 15507473..15507566 69..162 100 <- Minus
3L 15507799..15507851 16..68 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:38 Download gff for BS13727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498981..15499248 282..549 97 <- Minus
arm_3L 15499327..15499445 163..281 100 <- Minus
arm_3L 15500573..15500666 69..162 100 <- Minus
arm_3L 15500899..15500951 16..68 100 <- Minus

BS13727.complete Sequence

557 bp assembled on 2006-11-01

GenBank Submission: FJ637512

> BS13727.complete
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGTAGAAGCTTTCT
AGACCAT

BS13727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 525 CG7841-PB 1..525 17..541 2595 99.6 Plus
CG7841-RA 525 CG7841-PA 1..525 17..541 2595 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RB 1628 CG7841-RB 402..927 16..541 2600 99.6 Plus
CG7841-RA 1377 CG7841-RA 402..927 16..541 2600 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505889..15506148 541..282 1270 99.2 Minus
3L 28110227 3L 15506227..15506345 281..163 595 100 Minus
3L 28110227 3L 15507473..15507567 162..68 475 100 Minus
3L 28110227 3L 15507798..15507851 69..16 270 100 Minus
Blast to na_te.dros performed 2014-11-26 15:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 357..416 117 68.3 Plus

BS13727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:23 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:51 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 432..971 9..549 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:14 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 403..927 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:23 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 432..971 9..549 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:23 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 403..927 17..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:23 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505889..15506148 282..541 99 <- Minus
3L 15506227..15506345 163..281 100 <- Minus
3L 15507473..15507566 69..162 100 <- Minus
3L 15507799..15507850 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:14 Download gff for BS13727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498989..15499248 282..541 99 <- Minus
arm_3L 15499327..15499445 163..281 100 <- Minus
arm_3L 15500573..15500666 69..162 100 <- Minus
arm_3L 15500899..15500950 17..68 100   Minus

BS13727.pep Sequence

Translation from 16 to 540

> BS13727.pep
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSL*

BS13727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PB 174 CG7841-PB 1..174 1..174 908 100 Plus
CG7841-PA 174 CG7841-PA 1..174 1..174 908 100 Plus