Clone Sequence Records
BS13727.3prime Sequence
555 bp (550 high quality bases) assembled on 2006-10-13
> BS13727.3prime
ATGGTCTAGAAAGCTTCTACAGGCTTTTGGTTATGTTCTGGAAGAGGCGA
CGTCCCCACCACGACTCCAGGTCGAAGGGCTTGAAGTCCTGTAGCGCTGG
ACTCGGTGGTTCCACCCAGACAGTGGCTGTTGAGGCAGCGGGCACTGGGC
TGTTGGCCATTATGCTTTCCACTGGACTGGCGGCGCTGTTGTTGTTGGCA
TCCGCTACAGGTTTCTCAACAGGCTTGGCGGATGAGCTCGAGTCGTAGGG
ATTCTGCGCCACCAGCATGTTCCAGGAGTCATTTATGTAACGTATTATTT
CCTCATGTTGCGGCGTTATCACCTCATCCTCGATCAGTTTGGTTGGCGTT
ATCCGCTTGGTGGCGAAGCTCTGTTGAAACACCGGACGCGGTATGTTTTT
GTGCTCCTCGGGACTGTTCAGATCGAAACTAGCGTTCTTGCGGCCGCTCT
CCTTGATGCTTTCGAATTTTTCAAAATTTGGTGCCAGGCCGCGACGCGTT
TTAGCAACAATTTTGCTAGGTCCCTTGTTGATTGTGTACATGTCGACTGA
TAACT
BS13727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PA | 525 | CG7841-RA | 1..525 | 541..17 | 2575 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..927 | 542..17 | 2600 | 99.6 | Minus |
CG7841-RA | 1377 | CG7841-RA | 402..927 | 542..17 | 2600 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505889..15506148 | 17..276 | 1270 | 99.2 | Plus |
3L | 28110227 | 3L | 15506227..15506345 | 277..395 | 595 | 100 | Plus |
3L | 28110227 | 3L | 15507473..15507567 | 396..490 | 475 | 100 | Plus |
3L | 28110227 | 3L | 15507798..15507851 | 489..542 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 201..142 | 117 | 68.3 | Minus |
BS13727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for
BS13727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 17..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:04 Download gff for
BS13727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..935 | 9..549 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:21 Download gff for
BS13727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..935 | 9..549 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:21 Download gff for
BS13727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15507799..15507854 | 490..549 | 93 | | Plus |
3L | 15506227..15506345 | 277..395 | 100 | <- | Plus |
3L | 15505881..15506148 | 9..276 | 97 | <- | Plus |
3L | 15507473..15507566 | 396..489 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:04 Download gff for
BS13727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15498981..15499248 | 9..276 | 97 | <- | Plus |
arm_3L | 15499327..15499445 | 277..395 | 100 | <- | Plus |
arm_3L | 15500573..15500666 | 396..489 | 100 | <- | Plus |
arm_3L | 15500899..15500954 | 490..549 | 93 | | Plus |
BS13727.5prime Sequence
555 bp (555 high quality bases) assembled on 2006-10-13
> BS13727.5prime
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGTAGAAGCTTTCT
AGACC
BS13727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PA | 525 | CG7841-RA | 1..525 | 17..541 | 2575 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..927 | 16..541 | 2600 | 99.6 | Plus |
CG7841-RA | 1377 | CG7841-RA | 402..927 | 16..541 | 2600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505889..15506148 | 541..282 | 1270 | 99.2 | Minus |
3L | 28110227 | 3L | 15506227..15506345 | 281..163 | 595 | 100 | Minus |
3L | 28110227 | 3L | 15507473..15507567 | 162..68 | 475 | 100 | Minus |
3L | 28110227 | 3L | 15507798..15507851 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 357..416 | 117 | 68.3 | Plus |
BS13727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for
BS13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:38 Download gff for
BS13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..935 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:26 Download gff for
BS13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 396..935 | 9..549 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:26 Download gff for
BS13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15505881..15506148 | 282..549 | 97 | <- | Minus |
3L | 15506227..15506345 | 163..281 | 100 | <- | Minus |
3L | 15507473..15507566 | 69..162 | 100 | <- | Minus |
3L | 15507799..15507851 | 16..68 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:38 Download gff for
BS13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15498981..15499248 | 282..549 | 97 | <- | Minus |
arm_3L | 15499327..15499445 | 163..281 | 100 | <- | Minus |
arm_3L | 15500573..15500666 | 69..162 | 100 | <- | Minus |
arm_3L | 15500899..15500951 | 16..68 | 100 | <- | Minus |
BS13727.complete Sequence
557 bp assembled on 2006-11-01
GenBank Submission: FJ637512
> BS13727.complete
GAAGTTATCAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTG
TTGCTAAAACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGC
ATCAAGGAGAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGA
GGAGCACAAAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCA
AGCGGATAACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAA
CATGAGGAAATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGC
GCAGAATCCCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTG
TAGCGGATGCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATG
GCCAACAGCCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACC
ACCGAGTCCAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGT
GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGTAGAAGCTTTCT
AGACCAT
BS13727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 525 | CG7841-PB | 1..525 | 17..541 | 2595 | 99.6 | Plus |
CG7841-RA | 525 | CG7841-PA | 1..525 | 17..541 | 2595 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-RB | 1628 | CG7841-RB | 402..927 | 16..541 | 2600 | 99.6 | Plus |
CG7841-RA | 1377 | CG7841-RA | 402..927 | 16..541 | 2600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15505889..15506148 | 541..282 | 1270 | 99.2 | Minus |
3L | 28110227 | 3L | 15506227..15506345 | 281..163 | 595 | 100 | Minus |
3L | 28110227 | 3L | 15507473..15507567 | 162..68 | 475 | 100 | Minus |
3L | 28110227 | 3L | 15507798..15507851 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 357..416 | 117 | 68.3 | Plus |
BS13727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:23 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:51 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 432..971 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:14 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 403..927 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:23 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 432..971 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:23 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7841-RA | 403..927 | 17..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:23 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15505889..15506148 | 282..541 | 99 | <- | Minus |
3L | 15506227..15506345 | 163..281 | 100 | <- | Minus |
3L | 15507473..15507566 | 69..162 | 100 | <- | Minus |
3L | 15507799..15507850 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:14 Download gff for
BS13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15498989..15499248 | 282..541 | 99 | <- | Minus |
arm_3L | 15499327..15499445 | 163..281 | 100 | <- | Minus |
arm_3L | 15500573..15500666 | 69..162 | 100 | <- | Minus |
arm_3L | 15500899..15500950 | 17..68 | 100 | | Minus |
BS13727.pep Sequence
Translation from 16 to 540
> BS13727.pep
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSL*
BS13727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7841-PB | 174 | CG7841-PB | 1..174 | 1..174 | 908 | 100 | Plus |
CG7841-PA | 174 | CG7841-PA | 1..174 | 1..174 | 908 | 100 | Plus |