Clone Sequence Records
BS13728.3prime Sequence
670 bp (558 high quality bases) assembled on 2006-10-13
> BS13728.3prime
ATGGTCTAGAAAGCTTTCAATATGTGAACTTCCACAGGTTCTTCCATGTC
TCGCGCTTGTACACATTCTTGTACGTCTGCACGGACACCTGGAACTCGGG
GCCAAACAAGGTGTTGGCCAAAACATTCTCCACAGCCAAATTTCGATTGG
TAACCGCGTGAACAATGACAAGCGGATTGTGTACTGGTATGGTCTTGCCT
TCGCTTTCGAATCGAAGATCGGGATCCTTGTGGGCGCAGAAGAAGTGAGT
GTGCGAAGTGGGCACACGGGCAGAGGGGCCACAATTCTTATGGGACACTA
AGCCGAGTGGAAGTGTAACCTCGCCGTTTTTGGTTGTAAAGAACGCCTTC
TCCACGGGAAGCGAGAGGTTCAGCCTCTTGGGACCGCTGAAAACATACAT
AGGCTCATCAGCAGGCTCCAGGGCTTGCAGGCGGAACTTCTCGCCGTAGG
CCAGATACTGACCGGTACGGTCATCCTCGTTCGGACTGACGATTCTGAAG
CTGTTGCGCAACGCGGGACGCGGCGAAGGTGCCACCGTAAGATCACACAT
CTCGTTGATGGTCTTGCAGTTGCGATGCAGTCCCTCCTGAGTAATTACCA
CCGAAAGCAACAAGTTCTGATCCGAAACCTGTTGGCGGCAGACACCGATC
TTTCCGGGCCGGATCTGGAC
BS13728.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 846 | CG15498-RA | 193..846 | 670..17 | 3145 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 314..967 | 670..17 | 3195 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568715 | 287..670 | 1860 | 99 | Plus |
3R | 32079331 | 3R | 21567691..21567858 | 17..184 | 840 | 100 | Plus |
3R | 32079331 | 3R | 21568169..21568275 | 182..288 | 520 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:20:03 has no hits.
BS13728.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for
BS13728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 193..846 | 17..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:32 Download gff for
BS13728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 314..967 | 17..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:36 Download gff for
BS13728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 314..967 | 17..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:36 Download gff for
BS13728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21567691..21567858 | 17..184 | 100 | <- | Plus |
3R | 21568172..21568273 | 185..286 | 99 | <- | Plus |
3R | 21568332..21568715 | 287..670 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:32 Download gff for
BS13728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17393413..17393580 | 17..184 | 100 | <- | Plus |
arm_3R | 17393894..17393995 | 185..286 | 99 | <- | Plus |
arm_3R | 17394054..17394437 | 287..670 | 98 | | Plus |
BS13728.5prime Sequence
687 bp (518 high quality bases) assembled on 2006-10-13
> BS13728.5prime
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGAC
BS13728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 846 | CG15498-RA | 1..671 | 17..687 | 3330 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 122..792 | 17..687 | 3340 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568852 | 592..72 | 2605 | 100 | Minus |
3R | 32079331 | 3R | 21568179..21568275 | 687..591 | 470 | 99 | Minus |
3R | 32079331 | 3R | 21568972..21569028 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:59:42 has no hits.
BS13728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:23 Download gff for
BS13728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-PA | 1..671 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:50 Download gff for
BS13728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..792 | 6..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:53 Download gff for
BS13728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..792 | 6..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:53 Download gff for
BS13728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21568179..21568273 | 593..687 | 98 | <- | Minus |
3R | 21568332..21568850 | 74..592 | 100 | <- | Minus |
3R | 21568972..21569037 | 6..73 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:50 Download gff for
BS13728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17393901..17393995 | 593..687 | 98 | <- | Minus |
arm_3R | 17394054..17394572 | 74..592 | 100 | <- | Minus |
arm_3R | 17394694..17394759 | 6..73 | 92 | | Minus |
BS13728.complete Sequence
878 bp assembled on 2006-11-01
GenBank Submission: FJ637513
> BS13728.complete
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TTCACATATTGAAAGCTTTCTAGACCAT
BS13728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 846 | CG15498-PA | 1..846 | 17..862 | 4215 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-RA | 1139 | CG15498-RA | 122..967 | 17..862 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21568332..21568852 | 592..72 | 2605 | 100 | Minus |
3R | 32079331 | 3R | 21567691..21567858 | 862..695 | 840 | 100 | Minus |
3R | 32079331 | 3R | 21568169..21568275 | 697..591 | 520 | 99.1 | Minus |
3R | 32079331 | 3R | 21568972..21569028 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:20 has no hits.
BS13728.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:03 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:27 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..967 | 6..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:57 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 122..966 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:03 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 113..967 | 6..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:58 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15498-RA | 122..966 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:58 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21567692..21567858 | 695..861 | 100 | <- | Minus |
3R | 21568172..21568273 | 593..694 | 99 | <- | Minus |
3R | 21568332..21568850 | 74..592 | 100 | <- | Minus |
3R | 21568972..21569028 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:57 Download gff for
BS13728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17394694..17394750 | 17..73 | 100 | | Minus |
arm_3R | 17393894..17393995 | 593..694 | 99 | <- | Minus |
arm_3R | 17393414..17393580 | 695..861 | 100 | <- | Minus |
arm_3R | 17394054..17394572 | 74..592 | 100 | <- | Minus |
BS13728.pep Sequence
Translation from 16 to 861
> BS13728.pep
MYGPGVKVGNWLETALSEEMRMSEMKKRRESGNLLLDRTRAVYDRFYQGT
VLGPPQDVLAFGVVVQIRPVKIGVCRQQVSDQNLVLSVVITQEGLHRNCK
TINEMCDLTVAPSPRPALRNSFRIVSPNEDDRTGQYLAYGEKFRLQALEP
ADEPMYVFSGPKRLNLSLPVEKAFFTTKNGEVTLPLGLVSHKNCGPSARV
PTSHTHFFCAHKDPDLRFESEGKTIPVHNPLVIVHAVTNRNLAVENVLAN
TLFGPEFQVSVQTYKNVYKRETWKNLWKFTY*
BS13728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15498-PA | 281 | CG15498-PA | 1..281 | 1..281 | 1484 | 100 | Plus |
CG34457-PB | 308 | CG34457-PB | 15..290 | 2..277 | 701 | 47.3 | Plus |
CG34457-PA | 308 | CG34457-PA | 15..290 | 2..277 | 701 | 47.3 | Plus |