Clone BS13728 Report

Search the DGRC for BS13728

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG15498-RA
Protein status:BS13728.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13728.3prime Sequence

670 bp (558 high quality bases) assembled on 2006-10-13

> BS13728.3prime
ATGGTCTAGAAAGCTTTCAATATGTGAACTTCCACAGGTTCTTCCATGTC
TCGCGCTTGTACACATTCTTGTACGTCTGCACGGACACCTGGAACTCGGG
GCCAAACAAGGTGTTGGCCAAAACATTCTCCACAGCCAAATTTCGATTGG
TAACCGCGTGAACAATGACAAGCGGATTGTGTACTGGTATGGTCTTGCCT
TCGCTTTCGAATCGAAGATCGGGATCCTTGTGGGCGCAGAAGAAGTGAGT
GTGCGAAGTGGGCACACGGGCAGAGGGGCCACAATTCTTATGGGACACTA
AGCCGAGTGGAAGTGTAACCTCGCCGTTTTTGGTTGTAAAGAACGCCTTC
TCCACGGGAAGCGAGAGGTTCAGCCTCTTGGGACCGCTGAAAACATACAT
AGGCTCATCAGCAGGCTCCAGGGCTTGCAGGCGGAACTTCTCGCCGTAGG
CCAGATACTGACCGGTACGGTCATCCTCGTTCGGACTGACGATTCTGAAG
CTGTTGCGCAACGCGGGACGCGGCGAAGGTGCCACCGTAAGATCACACAT
CTCGTTGATGGTCTTGCAGTTGCGATGCAGTCCCTCCTGAGTAATTACCA
CCGAAAGCAACAAGTTCTGATCCGAAACCTGTTGGCGGCAGACACCGATC
TTTCCGGGCCGGATCTGGAC

BS13728.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 846 CG15498-RA 193..846 670..17 3145 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 314..967 670..17 3195 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568715 287..670 1860 99 Plus
3R 32079331 3R 21567691..21567858 17..184 840 100 Plus
3R 32079331 3R 21568169..21568275 182..288 520 99.1 Plus
Blast to na_te.dros performed on 2015-02-06 10:20:03 has no hits.

BS13728.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:22 Download gff for BS13728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 193..846 17..670 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:32 Download gff for BS13728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 314..967 17..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:36 Download gff for BS13728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 314..967 17..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:36 Download gff for BS13728.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21567691..21567858 17..184 100 <- Plus
3R 21568172..21568273 185..286 99 <- Plus
3R 21568332..21568715 287..670 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:32 Download gff for BS13728.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17393413..17393580 17..184 100 <- Plus
arm_3R 17393894..17393995 185..286 99 <- Plus
arm_3R 17394054..17394437 287..670 98   Plus

BS13728.5prime Sequence

687 bp (518 high quality bases) assembled on 2006-10-13

> BS13728.5prime
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGAC

BS13728.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 846 CG15498-RA 1..671 17..687 3330 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 122..792 17..687 3340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568852 592..72 2605 100 Minus
3R 32079331 3R 21568179..21568275 687..591 470 99 Minus
3R 32079331 3R 21568972..21569028 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:59:42 has no hits.

BS13728.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:23 Download gff for BS13728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-PA 1..671 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:50 Download gff for BS13728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..792 6..687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:53 Download gff for BS13728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..792 6..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:53 Download gff for BS13728.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21568179..21568273 593..687 98 <- Minus
3R 21568332..21568850 74..592 100 <- Minus
3R 21568972..21569037 6..73 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:50 Download gff for BS13728.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17393901..17393995 593..687 98 <- Minus
arm_3R 17394054..17394572 74..592 100 <- Minus
arm_3R 17394694..17394759 6..73 92   Minus

BS13728.complete Sequence

878 bp assembled on 2006-11-01

GenBank Submission: FJ637513

> BS13728.complete
GAAGTTATCAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGC
TGGAAACTGCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGT
CGGGAGAGCGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCG
CTTCTACCAGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCG
GCGTGGTGGTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAG
GTTTCGGATCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACT
GCATCGCAACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCAC
CTTCGCCGCGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAAC
GAGGATGACCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCT
GCAAGCCCTGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCA
AGAGGCTGAACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAA
AACGGCGAGGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGG
CCCCTCTGCCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACA
AGGATCCCGATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACAC
AATCCGCTTGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGA
GAATGTTTTGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGC
AGACGTACAAGAATGTGTACAAGCGCGAGACATGGAAGAACCTGTGGAAG
TTCACATATTGAAAGCTTTCTAGACCAT

BS13728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 846 CG15498-PA 1..846 17..862 4215 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-RA 1139 CG15498-RA 122..967 17..862 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21568332..21568852 592..72 2605 100 Minus
3R 32079331 3R 21567691..21567858 862..695 840 100 Minus
3R 32079331 3R 21568169..21568275 697..591 520 99.1 Minus
3R 32079331 3R 21568972..21569028 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:30:20 has no hits.

BS13728.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:03 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:27 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..967 6..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:57 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 122..966 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:03 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 113..967 6..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:58 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
CG15498-RA 122..966 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:58 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21567692..21567858 695..861 100 <- Minus
3R 21568172..21568273 593..694 99 <- Minus
3R 21568332..21568850 74..592 100 <- Minus
3R 21568972..21569028 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:57 Download gff for BS13728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17394694..17394750 17..73 100   Minus
arm_3R 17393894..17393995 593..694 99 <- Minus
arm_3R 17393414..17393580 695..861 100 <- Minus
arm_3R 17394054..17394572 74..592 100 <- Minus

BS13728.pep Sequence

Translation from 16 to 861

> BS13728.pep
MYGPGVKVGNWLETALSEEMRMSEMKKRRESGNLLLDRTRAVYDRFYQGT
VLGPPQDVLAFGVVVQIRPVKIGVCRQQVSDQNLVLSVVITQEGLHRNCK
TINEMCDLTVAPSPRPALRNSFRIVSPNEDDRTGQYLAYGEKFRLQALEP
ADEPMYVFSGPKRLNLSLPVEKAFFTTKNGEVTLPLGLVSHKNCGPSARV
PTSHTHFFCAHKDPDLRFESEGKTIPVHNPLVIVHAVTNRNLAVENVLAN
TLFGPEFQVSVQTYKNVYKRETWKNLWKFTY*

BS13728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15498-PA 281 CG15498-PA 1..281 1..281 1484 100 Plus
CG34457-PB 308 CG34457-PB 15..290 2..277 701 47.3 Plus
CG34457-PA 308 CG34457-PA 15..290 2..277 701 47.3 Plus