Clone Sequence Records
BS13729.complete Sequence
1001 bp assembled on 2010-02-09
GenBank Submission: KX802493
> BS13729.complete
GAAGTTATCAGTCGACATGAAGCATCTCCTGACTGCACTCGTGGCCCTGC
TGAGCATCCTGCCGCGGGGCGAGCTCCTGGGATCAGGACCCCCCTGCCCG
CGTCGCTATTTGCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAA
AAAGATGAACTGGTTTGGCGCCCTGAACAACTGCCTACGCAAAGGACTGA
CCCTGGCAGACTTGAGCAACCAAAGGGACTTCGACGGAGCCATTGGGTTC
CTGAGTGGCCTGGGCAACACGGAGGATTTCTGGTTCGGGGGCAACGATCT
GTATCACGAGGGTCGTTTCCAGTACATCAGCAACGGTCGGTTGGTGCGCT
ACTACAGCAACTATAGCAACGTCCTGCCACTGGAGCACTCCGAGTGCGAC
GACTGCCTGGAGGTGAGGATCCGCTCCGAGATCAACATGGTGTCGGCAGA
CAACTGCCACGAGCGGCAATACTTCATCTGCTCGGAACGCTACTGCCAGG
GCACGGATAGTGGCAAGAAGCCGAAGCACCACAGTCACGAGCACTTGCAT
CACTTCCACCACGACATTGGCGGAAGTGCCGAAGGAGAGGACGATGGCGA
TGGCGATGGCGACCACGACCGCCAGGACCCCATTGCCAGTGGCTCAGTGG
AGCACCCGGAGCCGGACTCGGAGGATGCAGTCGGGGCGCTCGACGTGCCC
GATGACGATCAACCTGGTCAGAATGGCGTCTCGGTGACACCGGGAGCGGA
AGAAACAAATACCGTTGGCGGAACTGGTGAGCCGGGCGCAACTGCCACCC
CTGCCGCCGGAGCTGAAGCTGTTTCTCCAGCAGCAGAAGGAGCCGCACCC
GCCGGAGCAGCTCCAGCTGCCGAAGGTGCCGCCACTCCTGCCGCCGACGG
AGCCACGCCCGCACCCACTCCCGCGCCAGGAGCAGAAGCACCCGCCGCCG
CAGCAGCCGAGACTCCGGCACCGCCAGCAGCCTGAAAGCTTTCTAGACCA
T
BS13729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lectin-46Cb-RB | 969 | CG1652-PB | 1..969 | 17..985 | 4785 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lectin-46Cb-RB | 1039 | CG1652-RB | 2..974 | 13..985 | 4790 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9815703..9816535 | 153..985 | 4105 | 99.5 | Plus |
2R | 25286936 | 2R | 9815511..9815652 | 13..154 | 695 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 04:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1048..1163 | 816..933 | 135 | 59.7 | Plus |
BS13729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:59 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RA | 439..1406 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:07 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 6..973 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:32 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RA | 439..1406 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:55 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 6..973 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:55 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9815515..9815652 | 17..154 | 100 | -> | Plus |
2R | 9815705..9816534 | 155..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:07 Download gff for
BS13729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5703020..5703157 | 17..154 | 100 | -> | Plus |
arm_2R | 5703210..5704039 | 155..984 | 99 | | Plus |
BS13729.3prime Sequence
623 bp (579 high quality bases) assembled on 2006-10-13
> BS13729.3prime
ATGGTCTAGAAAGCTTTCAGGCTGCTGGCGGTGCCGGAGTCTCGGCTGCT
GCGGCGGCGGGTGCTTCTGCTCCTGGCGCGGGAGTGGGTGCGGGCGTGGC
TCCGTCGGCGGCAGGAGTGGCGGCACCTTCGGCAGCTGGAGCTGCTCCGG
CGGGTGCGGCTCCTTCTGCTGCTGGAGAAACAGCTTCAGCTCCGGCGGCA
GGGGTGGCAGTTGCGCCCGGCTCACCAGTTCCGCCAACGGTATTTGTTTC
TTCCGCTCCCGGTGTCACCGAGACGCCATTCTGACCAGGTTGATCGTCAT
CGGGCACGTCGAGCGCCCCGACTGCATCCTCCGAGTCCGGCTCCGGGTGC
TCCACTGAGCCACTGGCAATGGGGTCCTGGCGGTCGTGGTCGCCATCGCC
ATCGCCATCGTCCTCTCCTTCGGCACTTCCGCCAATGTCGTGGTGGAAGT
GATGCAAGTGCTCGTGACTGTGGTGCTTCGGCTTCTTGCCACTATCCGTG
CCCTGGCAGTAGCGTTCCGAGCAGATGAAGTATTGCCGCTCGTGGCAGTT
GTCTGCCGACACCATGTTGATCTCGGAGCGGATCCTCACCTCCAGGCAGT
CGTCGCACTCGGAGTGCTCCAGT
BS13729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1652-PA | 969 | lectin-46Cb-RA | 363..969 | 623..17 | 3035 | 100 | Minus |
CG1656-PA | 987 | lectin-46Ca-RA | 538..573 | 472..437 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lectin-46Cb-RB | 1039 | CG1652-RB | 368..974 | 623..17 | 3035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9815929..9816535 | 623..17 | 3035 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1048..1163 | 186..69 | 135 | 59.7 | Minus |
BS13729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:23 Download gff for
BS13729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1652-PA | 363..969 | 17..623 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:17 Download gff for
BS13729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 368..977 | 12..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:43 Download gff for
BS13729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 368..977 | 12..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:43 Download gff for
BS13729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9815929..9816538 | 12..623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:17 Download gff for
BS13729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5703434..5704043 | 12..623 | 99 | | Minus |
BS13729.5prime Sequence
636 bp (584 high quality bases) assembled on 2006-10-13
> BS13729.5prime
GAAGTTATCAGTTTACATGAAGCATCTCCTGACTGCACTCGTGGCCCTGC
TGAGCATCCTGCCGCGGGGCGAGCTCCTGGGATCAGGACCCCCCTGCCCG
CGTCGCTATTTGCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAA
AAAGATGAACTGGTTTGGCGCCCTGAACAACTGCCTACGCAAAGGACTGA
CCCTGGCAGACTTGAGCAACCAAAGGGACTTCGACGGAGCCATTGGGTTC
CTGAGTGGCCTGGGCAACACGGAGGATTTCTGGTTCGGGGGCAACGATCT
GTATCACGAGGGTCGTTTCCAGTACATCAGCAACGGTCGGTTGGTGCGCT
ACTACAGCAACTATAGCAACGTCCTGCCACTGGAGCACTCCGAGTGCGAC
GACTGCCTGGAGGTGAGGATCCGCTCCGAGATCAACATGGTGTCGGCAGA
CAACTGCCACGAGCGGCAATACTTCATCTGCTCGGAACGCTACTGCCAGG
GCACGGATAGTGGCAAGAAGCCGAAGCACCACAGTCACGAGCACTTGCAT
CACTTCCACCACGACATTGGCGGAAGTGCCGAAGGAGAGGACGATGGCGA
TGGCGATGGCGACCACGACCGCCAGGACCCCATTGC
BS13729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1652-PA | 969 | lectin-46Cb-RA | 1..620 | 17..636 | 3000 | 99.3 | Plus |
CG1656-PA | 987 | lectin-46Ca-RA | 538..573 | 530..565 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lectin-46Cb-RB | 1039 | CG1652-RB | 6..625 | 17..636 | 3040 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9815703..9816186 | 153..636 | 2360 | 99.2 | Plus |
2R | 25286936 | 2R | 9815515..9815652 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:02:35 has no hits.
BS13729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:24 Download gff for
BS13729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1652-PA | 1..620 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:13 Download gff for
BS13729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 2..625 | 16..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:19 Download gff for
BS13729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lectin-46Cb-RB | 2..625 | 16..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:19 Download gff for
BS13729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9815509..9815652 | 10..154 | 97 | -> | Plus |
2R | 9815705..9816186 | 155..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:13 Download gff for
BS13729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5703014..5703157 | 10..154 | 97 | -> | Plus |
arm_2R | 5703210..5703691 | 155..636 | 99 | | Plus |
BS13729.pep Sequence
Translation from 16 to 984
> BS13729.pep
MKHLLTALVALLSILPRGELLGSGPPCPRRYLRRINGKCYYFSVKKMNWF
GALNNCLRKGLTLADLSNQRDFDGAIGFLSGLGNTEDFWFGGNDLYHEGR
FQYISNGRLVRYYSNYSNVLPLEHSECDDCLEVRIRSEINMVSADNCHER
QYFICSERYCQGTDSGKKPKHHSHEHLHHFHHDIGGSAEGEDDGDGDGDH
DRQDPIASGSVEHPEPDSEDAVGALDVPDDDQPGQNGVSVTPGAEETNTV
GGTGEPGATATPAAGAEAVSPAAEGAAPAGAAPAAEGAATPAADGATPAP
TPAPGAEAPAAAAAETPAPPAA*
BS13729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lectin-46Cb-PB | 322 | CG1652-PB | 1..322 | 1..322 | 1744 | 100 | Plus |
lectin-46Ca-PA | 328 | CG1656-PA | 31..328 | 26..313 | 613 | 46.9 | Plus |
Tm1-PF | 501 | CG4898-PF | 329..474 | 186..322 | 161 | 37.1 | Plus |
CG12111-PB | 188 | CG12111-PB | 50..173 | 34..155 | 150 | 29.4 | Plus |
CG12111-PA | 188 | CG12111-PA | 50..173 | 34..155 | 150 | 29.4 | Plus |