Clone BS13729 Report

Search the DGRC for BS13729

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptlectin-46Cb-RB
Protein status:BS13729.pep: full length peptide match
Sequenced Size:1001

Clone Sequence Records

BS13729.complete Sequence

1001 bp assembled on 2010-02-09

GenBank Submission: KX802493

> BS13729.complete
GAAGTTATCAGTCGACATGAAGCATCTCCTGACTGCACTCGTGGCCCTGC
TGAGCATCCTGCCGCGGGGCGAGCTCCTGGGATCAGGACCCCCCTGCCCG
CGTCGCTATTTGCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAA
AAAGATGAACTGGTTTGGCGCCCTGAACAACTGCCTACGCAAAGGACTGA
CCCTGGCAGACTTGAGCAACCAAAGGGACTTCGACGGAGCCATTGGGTTC
CTGAGTGGCCTGGGCAACACGGAGGATTTCTGGTTCGGGGGCAACGATCT
GTATCACGAGGGTCGTTTCCAGTACATCAGCAACGGTCGGTTGGTGCGCT
ACTACAGCAACTATAGCAACGTCCTGCCACTGGAGCACTCCGAGTGCGAC
GACTGCCTGGAGGTGAGGATCCGCTCCGAGATCAACATGGTGTCGGCAGA
CAACTGCCACGAGCGGCAATACTTCATCTGCTCGGAACGCTACTGCCAGG
GCACGGATAGTGGCAAGAAGCCGAAGCACCACAGTCACGAGCACTTGCAT
CACTTCCACCACGACATTGGCGGAAGTGCCGAAGGAGAGGACGATGGCGA
TGGCGATGGCGACCACGACCGCCAGGACCCCATTGCCAGTGGCTCAGTGG
AGCACCCGGAGCCGGACTCGGAGGATGCAGTCGGGGCGCTCGACGTGCCC
GATGACGATCAACCTGGTCAGAATGGCGTCTCGGTGACACCGGGAGCGGA
AGAAACAAATACCGTTGGCGGAACTGGTGAGCCGGGCGCAACTGCCACCC
CTGCCGCCGGAGCTGAAGCTGTTTCTCCAGCAGCAGAAGGAGCCGCACCC
GCCGGAGCAGCTCCAGCTGCCGAAGGTGCCGCCACTCCTGCCGCCGACGG
AGCCACGCCCGCACCCACTCCCGCGCCAGGAGCAGAAGCACCCGCCGCCG
CAGCAGCCGAGACTCCGGCACCGCCAGCAGCCTGAAAGCTTTCTAGACCA
T

BS13729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-RB 969 CG1652-PB 1..969 17..985 4785 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-RB 1039 CG1652-RB 2..974 13..985 4790 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9815703..9816535 153..985 4105 99.5 Plus
2R 25286936 2R 9815511..9815652 13..154 695 99.3 Plus
Blast to na_te.dros performed 2014-11-28 04:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1048..1163 816..933 135 59.7 Plus

BS13729.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:59 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 439..1406 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:07 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 6..973 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:32 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 439..1406 17..984 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:55 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 6..973 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:55 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9815515..9815652 17..154 100 -> Plus
2R 9815705..9816534 155..984 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:07 Download gff for BS13729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5703020..5703157 17..154 100 -> Plus
arm_2R 5703210..5704039 155..984 99   Plus

BS13729.3prime Sequence

623 bp (579 high quality bases) assembled on 2006-10-13

> BS13729.3prime
ATGGTCTAGAAAGCTTTCAGGCTGCTGGCGGTGCCGGAGTCTCGGCTGCT
GCGGCGGCGGGTGCTTCTGCTCCTGGCGCGGGAGTGGGTGCGGGCGTGGC
TCCGTCGGCGGCAGGAGTGGCGGCACCTTCGGCAGCTGGAGCTGCTCCGG
CGGGTGCGGCTCCTTCTGCTGCTGGAGAAACAGCTTCAGCTCCGGCGGCA
GGGGTGGCAGTTGCGCCCGGCTCACCAGTTCCGCCAACGGTATTTGTTTC
TTCCGCTCCCGGTGTCACCGAGACGCCATTCTGACCAGGTTGATCGTCAT
CGGGCACGTCGAGCGCCCCGACTGCATCCTCCGAGTCCGGCTCCGGGTGC
TCCACTGAGCCACTGGCAATGGGGTCCTGGCGGTCGTGGTCGCCATCGCC
ATCGCCATCGTCCTCTCCTTCGGCACTTCCGCCAATGTCGTGGTGGAAGT
GATGCAAGTGCTCGTGACTGTGGTGCTTCGGCTTCTTGCCACTATCCGTG
CCCTGGCAGTAGCGTTCCGAGCAGATGAAGTATTGCCGCTCGTGGCAGTT
GTCTGCCGACACCATGTTGATCTCGGAGCGGATCCTCACCTCCAGGCAGT
CGTCGCACTCGGAGTGCTCCAGT

BS13729.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1652-PA 969 lectin-46Cb-RA 363..969 623..17 3035 100 Minus
CG1656-PA 987 lectin-46Ca-RA 538..573 472..437 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-RB 1039 CG1652-RB 368..974 623..17 3035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9815929..9816535 623..17 3035 100 Minus
Blast to na_te.dros performed 2015-02-12 11:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1048..1163 186..69 135 59.7 Minus

BS13729.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:23 Download gff for BS13729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1652-PA 363..969 17..623 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:17 Download gff for BS13729.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 368..977 12..623 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:43 Download gff for BS13729.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 368..977 12..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:43 Download gff for BS13729.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9815929..9816538 12..623 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:17 Download gff for BS13729.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5703434..5704043 12..623 99   Minus

BS13729.5prime Sequence

636 bp (584 high quality bases) assembled on 2006-10-13

> BS13729.5prime
GAAGTTATCAGTTTACATGAAGCATCTCCTGACTGCACTCGTGGCCCTGC
TGAGCATCCTGCCGCGGGGCGAGCTCCTGGGATCAGGACCCCCCTGCCCG
CGTCGCTATTTGCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAA
AAAGATGAACTGGTTTGGCGCCCTGAACAACTGCCTACGCAAAGGACTGA
CCCTGGCAGACTTGAGCAACCAAAGGGACTTCGACGGAGCCATTGGGTTC
CTGAGTGGCCTGGGCAACACGGAGGATTTCTGGTTCGGGGGCAACGATCT
GTATCACGAGGGTCGTTTCCAGTACATCAGCAACGGTCGGTTGGTGCGCT
ACTACAGCAACTATAGCAACGTCCTGCCACTGGAGCACTCCGAGTGCGAC
GACTGCCTGGAGGTGAGGATCCGCTCCGAGATCAACATGGTGTCGGCAGA
CAACTGCCACGAGCGGCAATACTTCATCTGCTCGGAACGCTACTGCCAGG
GCACGGATAGTGGCAAGAAGCCGAAGCACCACAGTCACGAGCACTTGCAT
CACTTCCACCACGACATTGGCGGAAGTGCCGAAGGAGAGGACGATGGCGA
TGGCGATGGCGACCACGACCGCCAGGACCCCATTGC

BS13729.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1652-PA 969 lectin-46Cb-RA 1..620 17..636 3000 99.3 Plus
CG1656-PA 987 lectin-46Ca-RA 538..573 530..565 155 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-RB 1039 CG1652-RB 6..625 17..636 3040 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9815703..9816186 153..636 2360 99.2 Plus
2R 25286936 2R 9815515..9815652 17..154 690 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:02:35 has no hits.

BS13729.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:24 Download gff for BS13729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1652-PA 1..620 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:13 Download gff for BS13729.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 2..625 16..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:19 Download gff for BS13729.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 2..625 16..636 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:19 Download gff for BS13729.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9815509..9815652 10..154 97 -> Plus
2R 9815705..9816186 155..636 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:13 Download gff for BS13729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5703014..5703157 10..154 97 -> Plus
arm_2R 5703210..5703691 155..636 99   Plus

BS13729.pep Sequence

Translation from 16 to 984

> BS13729.pep
MKHLLTALVALLSILPRGELLGSGPPCPRRYLRRINGKCYYFSVKKMNWF
GALNNCLRKGLTLADLSNQRDFDGAIGFLSGLGNTEDFWFGGNDLYHEGR
FQYISNGRLVRYYSNYSNVLPLEHSECDDCLEVRIRSEINMVSADNCHER
QYFICSERYCQGTDSGKKPKHHSHEHLHHFHHDIGGSAEGEDDGDGDGDH
DRQDPIASGSVEHPEPDSEDAVGALDVPDDDQPGQNGVSVTPGAEETNTV
GGTGEPGATATPAAGAEAVSPAAEGAAPAGAAPAAEGAATPAADGATPAP
TPAPGAEAPAAAAAETPAPPAA*

BS13729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-PB 322 CG1652-PB 1..322 1..322 1744 100 Plus
lectin-46Ca-PA 328 CG1656-PA 31..328 26..313 613 46.9 Plus
Tm1-PF 501 CG4898-PF 329..474 186..322 161 37.1 Plus
CG12111-PB 188 CG12111-PB 50..173 34..155 150 29.4 Plus
CG12111-PA 188 CG12111-PA 50..173 34..155 150 29.4 Plus