Clone Sequence Records
BS13734.3prime Sequence
545 bp (542 high quality bases) assembled on 2006-10-13
> BS13734.3prime
ATGGTCTAGAAAGCTTTTAATAGTTCTTTGACTTTTCATCGGCCAGAAGC
AGTTGCTTGAGGGCTGCGCCCCAGTGGTACTTCGAAGCTCCGTTTTGGGA
CACAACTCGGTGGCACGGAATGAGGATAGCAAGCTCATTTTTGGCCACAG
CACTGGCCACTGCTCTGACCGCCGTTGGACGACCCATCCGCTCGGCCAGT
TGGGAGTAAGTGCAGGTCTCCCCTCGTTTCATATGCACCAGAGCTCGCCA
TACGGACAGCTGGAAGTCGGTTCCATAGATGGCAATGGGAATCGCCTGCG
AGTTTTCCTTGTCGCTTTCGAACAGTTTATCCGCCACCAACTTGACCGCA
TCATCGTCCTTCCAGAGTTCGGATTTTGGCCACCGCTCCTGGACTTCATT
GTAGGTACTCACATTGTCCTTAATCACGAAGTGAAGCACACCAATTGCGA
CTTGGTCTTTCGAATCGCCGGATATTGGGTTTATCACTCCCATCATCATC
TGCCCGAACTTGGTCGCCAGGAAACTGTATCGGATGGTCTTTGGC
BS13734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1303-PA | 585 | agt-RA | 57..585 | 545..17 | 2645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 135..665 | 545..15 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659436..6659966 | 15..545 | 2655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:05 has no hits.
BS13734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:27 Download gff for
BS13734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1303-PA | 57..585 | 17..545 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:38 Download gff for
BS13734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 135..665 | 15..545 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:39 Download gff for
BS13734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 135..665 | 15..545 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:39 Download gff for
BS13734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659436..6659966 | 15..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:38 Download gff for
BS13734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485158..2485688 | 15..545 | 100 | | Plus |
BS13734.5prime Sequence
579 bp (572 high quality bases) assembled on 2006-10-13
> BS13734.5prime
GAAGTTATCAGTCGACATGACGATGTGGATTGGCCAAAACACCCAGATTC
GTTTGGTGCCACTAAAGGATCCGCCAAAGACCATCCGATACAGTTTCCTG
GCGACCAAGTTCGGGCAGATGATGATGGGAGTGATAAACCCAATATCCGG
CGATTCGAAAGACCAAGTCGCAATTGGTGTGCTTCACTTCGTGATTAAGG
ACAATGTGAGTACCTACAATGAAGTCCAGGAGCGGTGGCCAAAATCCGAA
CTCTGGAAGGACGATGATGCGGTCAAGTTGGTGGCGGATAAACTGTTCGA
AAGCGACAAGGAAAACTCGCAGGCGATTCCCATTGCCATCTATGGAACCG
ACTTCCAGCTGTCCGTATGGCGAGCTCTGGTGCATATGAAACGAGGGGAG
ACCTGCACTTACTCCCAACTGGCCGAGCGGATGGGTCGTCCAACGGCGGT
CAGAGCAGTGGCCAGTGCTGTGGCCAAAAATGAGCTTGCTATCCTCATTC
CGTGCCACCGAGTTGTGTCCCAAAACGGAGCTTCGAAGTACCACTGGGGC
GCAGCCCTCAAGCAACTGCTTCTGGCCGA
BS13734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1303-PA | 585 | agt-RA | 1..563 | 17..579 | 2815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 79..641 | 17..579 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659460..6660022 | 579..17 | 2815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:14 has no hits.
BS13734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:28 Download gff for
BS13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1303-PA | 1..562 | 17..578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:45 Download gff for
BS13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..640 | 17..578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:13 Download gff for
BS13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..640 | 17..578 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:13 Download gff for
BS13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659461..6660022 | 17..578 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:45 Download gff for
BS13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485183..2485744 | 17..578 | 100 | | Minus |
BS13734.complete Sequence
617 bp assembled on 2006-11-01
GenBank Submission: FJ637514
> BS13734.complete
GAAGTTATCAGTCGACATGACGATGTGGATTGGCCAAAACACCCAGATTC
GTTTGGTGCCACTAAAGGATCCGCCAAAGACCATCCGATACAGTTTCCTG
GCGACCAAGTTCGGGCAGATGATGATGGGAGTGATAAACCCAATATCCGG
CGATTCGAAAGACCAAGTCGCAATTGGTGTGCTTCACTTCGTGATTAAGG
ACAATGTGAGTACCTACAATGAAGTCCAGGAGCGGTGGCCAAAATCCGAA
CTCTGGAAGGACGATGATGCGGTCAAGTTGGTGGCGGATAAACTGTTCGA
AAGCGACAAGGAAAACTCGCAGGCGATTCCCATTGCCATCTATGGAACCG
ACTTCCAGCTGTCCGTATGGCGAGCTCTGGTGCATATGAAACGAGGGGAG
ACCTGCACTTACTCCCAACTGGCCGAGCGGATGGGTCGTCCAACGGCGGT
CAGAGCAGTGGCCAGTGCTGTGGCCAAAAATGAGCTTGCTATCCTCATTC
CGTGCCACCGAGTTGTGTCCCAAAACGGAGCTTCGAAGTACCACTGGGGC
GCAGCCCTCAAGCAACTGCTTCTGGCCGATGAAAAGTCAAAGAACTATTA
AAAGCTTTCTAGACCAT
BS13734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 585 | CG1303-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 79..665 | 17..603 | 2935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659436..6660022 | 603..17 | 2935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:06:42 has no hits.
BS13734.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:06 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:29 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..665 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:02 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..661 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:06 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..665 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:13 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..661 | 17..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:13 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659440..6660022 | 17..599 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:02 Download gff for
BS13734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485162..2485744 | 17..599 | 100 | | Minus |
BS13734.pep Sequence
Translation from 16 to 600
> BS13734.pep
MTMWIGQNTQIRLVPLKDPPKTIRYSFLATKFGQMMMGVINPISGDSKDQ
VAIGVLHFVIKDNVSTYNEVQERWPKSELWKDDDAVKLVADKLFESDKEN
SQAIPIAIYGTDFQLSVWRALVHMKRGETCTYSQLAERMGRPTAVRAVAS
AVAKNELAILIPCHRVVSQNGASKYHWGAALKQLLLADEKSKNY*
BS13734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-PA | 194 | CG1303-PA | 1..194 | 1..194 | 1007 | 100 | Plus |
