Clone BS13736 Report

Search the DGRC for BS13736

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG11710-RA
Protein status:BS13736.pep: full length peptide match
Sequenced Size:1343

Clone Sequence Records

BS13736.complete Sequence

1343 bp assembled on 2009-12-07

GenBank Submission: KX806364

> BS13736.complete
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAGAGTTGCCGGAGGAACCGACCATC
TCCAAAGAGTACGAGCAGCAGGTGATCAGCGAACTAGCAGCCGTTTCTAA
AGCCTCGGGTGTTGGATCCAACTGGAGTGCATCCTCGGTCACCGGCCACT
CCGCCTTGACACTGGCACCACATTTGAACATGACCAAGCCGCCGGTCTAC
AAGCCCAGTAAGGAATCCAAGAGTTGGCCAGCTCCTGCAGCAGGCAGCGA
TTGGCTGGAGAGGACCTACAATCGGGTGCAGGACAAGGAGCTGCTGGAAA
TGCAGGACATGCGCCAGTGTCTGTCGATGCATCAGCCCTGGGCTTCGCTT
CTAGTGGCGGGCATTAAGAAACACGAGGGTCGAGTGTGGTACAGCGAGCA
CCGTGGTAGACTGTGGATCGCCTCCACTTCCAAGGAGCCGCACGCCGAAG
ACATTGCGCAAATGGAGGGCTTTTACAAGATCCCGACATTAAGTTTCCAA
GTCATTATCCCACAAGCAGTCTGCTAGAAGCTTTCTAGACCAT

BS13736.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1311 CG11710-PA 1..1311 17..1327 6555 100 Plus
CG11710-RC 1542 CG11710-PC 1..1324 17..1327 6390 99 Plus
CG11710-RB 1542 CG11710-PB 1..1324 17..1327 6390 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1766 CG11710-RA 100..1414 13..1327 6560 99.9 Plus
CG11710-RC 1903 CG11710-RC 100..1427 13..1327 6395 98.9 Plus
CG11710-RB 1779 CG11710-RB 100..1427 13..1327 6395 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428818..20429437 704..85 3100 100 Minus
X 23542271 X 20428233..20428705 1170..698 2350 99.8 Minus
X 23542271 X 20428064..20428172 1279..1171 545 100 Minus
X 23542271 X 20429502..20429574 85..13 350 98.6 Minus
X 23542271 X 20427947..20427996 1327..1278 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:48:32 has no hits.

BS13736.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:35 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 30..1340 17..1327 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:24 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 104..1414 17..1327 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:14 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 30..1340 17..1327 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:18 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 104..1414 17..1327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:18 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
X 20427947..20427994 1280..1327 100 <- Minus
X 20428064..20428172 1171..1279 100 <- Minus
X 20428233..20428699 704..1170 100 <- Minus
X 20428819..20429437 85..703 100 <- Minus
X 20429503..20429570 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:24 Download gff for BS13736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20298974..20299021 1280..1327 100 <- Minus
arm_X 20299091..20299199 1171..1279 100 <- Minus
arm_X 20299260..20299726 704..1170 100 <- Minus
arm_X 20299846..20300464 85..703 100 <- Minus
arm_X 20300530..20300597 17..84 100   Minus

BS13736.3prime Sequence

721 bp (591 high quality bases) assembled on 2006-10-13

> BS13736.3prime
ATGGTCTAGAAAGCTTCTAGCAGACTGCTTGTGGGATAATGACTTGGAAA
CTTAATGTCGGGATCTTGTAAAAGCCCTCCATTTGCGCAATGTCTTCGGC
GTGCGGCTCCTTGGAAGTGGAGGCGATCCACAGTCTACCACGGTGCTCGC
TGTACCACACTCGACCCTCGTGTTTCTTAATGCCCGCCACTAGAAGCGAA
GCCCAGGGCTGATGCATCGACAGACACTGGCGCATGTCCTGCATTTCCAG
CAGCTCCTTGTCCTGCACCCGATTGTAGGTCCTCTCCAGCCAATCGCTGC
CTGCTGCAGGAGCTGGCCAACTCTTGGATTCCTTACTGGGCTTGTAGACC
GGCGGCTTGGTCATGTTCAAATGTGGTGCCAGTGTCAAGGCGGAGTGGCC
GGTGACCGAGGATGCACTCCAGTTGGATCCAACACCCGAGGCTTTAGAAA
CGGCTGCTAGTTCGCTGATCACCTGCTGCTCGTACTCTTTGGAGATGGTC
GGTTCCTCCGGCAACTCTCGGCCAGCGAAGTCCCACCGGATCTTCCGCTT
CATGCGACTGCCGTGCTTTACCTCCTCCATTTCTCGGGGCAGTTTCTCAA
ACTTTTTCGCGCTCCGCGTCGCTCAGCCACACGGAGTTCTCCTGAAAGTA
ATCCAACTCATCGTCCAAAACTGTGGTCCTCTTCTCGCTGTTCTTTGCCA
ACTCCAACAAACAATCCCTTT

BS13736.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 1311 CG11710-RA 634..1311 695..17 3155 98.6 Minus
CG11710-PB 1542 CG11710-RB 634..1263 695..65 2915 98.5 Minus
CG11710-PB 1542 CG11710-RB 1276..1324 65..17 245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1766 CG11710-RA 711..1414 721..17 3275 97.7 Minus
CG11710-RC 1903 CG11710-RC 711..1427 721..17 3135 96 Minus
CG11710-RB 1779 CG11710-RB 711..1427 721..17 3135 96 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428233..20428705 174..647 2245 98.7 Plus
X 23542271 X 20428064..20428172 65..173 545 100 Plus
X 23542271 X 20427947..20427996 17..66 250 100 Plus
X 23542271 X 20428818..20428898 641..721 240 86.4 Plus
Blast to na_te.dros performed on 2015-02-12 16:41:16 has no hits.

BS13736.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:29 Download gff for BS13736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 623..1311 17..706 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:59 Download gff for BS13736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 726..1417 12..706 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:39 Download gff for BS13736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 726..1417 12..706 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:39 Download gff for BS13736.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20427944..20427994 12..64 96 <- Plus
X 20428064..20428172 65..173 100 <- Plus
X 20428233..20428699 174..641 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:59 Download gff for BS13736.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20298971..20299021 12..64 96 <- Plus
arm_X 20299091..20299199 65..173 100 <- Plus
arm_X 20299260..20299726 174..641 98 <- Plus

BS13736.5prime Sequence

697 bp (565 high quality bases) assembled on 2006-10-13

> BS13736.5prime
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAAGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAAAGGACACAGTTATCGACGATGAGCTGGACTACT

BS13736.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PB 1542 CG11710-RB 1..682 17..697 3320 99.5 Plus
CG11710-PA 1311 CG11710-RA 1..682 17..697 3320 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RC 1903 CG11710-RC 100..785 13..697 3360 99.4 Plus
CG11710-RA 1766 CG11710-RA 100..785 13..697 3360 99.4 Plus
CG11710-RB 1779 CG11710-RB 100..785 13..697 3360 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428824..20429437 697..85 2990 99.5 Minus
X 23542271 X 20429502..20429574 85..13 350 98.6 Minus
Blast to na_te.dros performed 2015-02-12 16:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10331..10370 554..593 119 77.5 Plus

BS13736.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:29 Download gff for BS13736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-PA 1..682 17..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:00 Download gff for BS13736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 100..785 13..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:16 Download gff for BS13736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 100..785 13..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:16 Download gff for BS13736.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20428824..20429437 85..697 99 <- Minus
X 20429503..20429574 13..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:00 Download gff for BS13736.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20299851..20300464 85..697 99 <- Minus
arm_X 20300530..20300601 13..84 98   Minus

BS13736.pep Sequence

Translation from 16 to 1326

> BS13736.pep
MENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNLLSEDNEEHR
MFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISKGAKGKSGKH
VNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGRIVCEQEGSG
PCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKELSTQALDKA
LAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAEREKFEKLHREM
EEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELAAVSKASGVG
SNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPAAGSDWLERT
YNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLW
IASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVC*

BS13736.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 436 CG11710-PA 1..436 1..436 2308 100 Plus
CG11710-PC 513 CG11710-PC 1..422 1..422 2235 99.8 Plus
CG11710-PB 513 CG11710-PB 1..422 1..422 2235 99.8 Plus