Clone Sequence Records
BS13736.complete Sequence
1343 bp assembled on 2009-12-07
GenBank Submission: KX806364
> BS13736.complete
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAGAGGACCACAGTTATCGACGATGAGCTGGACTACTTT
CAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCGAAAAGTTTGAGAA
ACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGTCGCATGAAGCGGA
AGATCCGGGTGGACTTCGCTGGCCGAGAGTTGCCGGAGGAACCGACCATC
TCCAAAGAGTACGAGCAGCAGGTGATCAGCGAACTAGCAGCCGTTTCTAA
AGCCTCGGGTGTTGGATCCAACTGGAGTGCATCCTCGGTCACCGGCCACT
CCGCCTTGACACTGGCACCACATTTGAACATGACCAAGCCGCCGGTCTAC
AAGCCCAGTAAGGAATCCAAGAGTTGGCCAGCTCCTGCAGCAGGCAGCGA
TTGGCTGGAGAGGACCTACAATCGGGTGCAGGACAAGGAGCTGCTGGAAA
TGCAGGACATGCGCCAGTGTCTGTCGATGCATCAGCCCTGGGCTTCGCTT
CTAGTGGCGGGCATTAAGAAACACGAGGGTCGAGTGTGGTACAGCGAGCA
CCGTGGTAGACTGTGGATCGCCTCCACTTCCAAGGAGCCGCACGCCGAAG
ACATTGCGCAAATGGAGGGCTTTTACAAGATCCCGACATTAAGTTTCCAA
GTCATTATCCCACAAGCAGTCTGCTAGAAGCTTTCTAGACCAT
BS13736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1311 | CG11710-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
CG11710-RC | 1542 | CG11710-PC | 1..1324 | 17..1327 | 6390 | 99 | Plus |
CG11710-RB | 1542 | CG11710-PB | 1..1324 | 17..1327 | 6390 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1766 | CG11710-RA | 100..1414 | 13..1327 | 6560 | 99.9 | Plus |
CG11710-RC | 1903 | CG11710-RC | 100..1427 | 13..1327 | 6395 | 98.9 | Plus |
CG11710-RB | 1779 | CG11710-RB | 100..1427 | 13..1327 | 6395 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428818..20429437 | 704..85 | 3100 | 100 | Minus |
X | 23542271 | X | 20428233..20428705 | 1170..698 | 2350 | 99.8 | Minus |
X | 23542271 | X | 20428064..20428172 | 1279..1171 | 545 | 100 | Minus |
X | 23542271 | X | 20429502..20429574 | 85..13 | 350 | 98.6 | Minus |
X | 23542271 | X | 20427947..20427996 | 1327..1278 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:48:32 has no hits.
BS13736.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:35 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 30..1340 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:24 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 104..1414 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:14 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 30..1340 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:18 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 104..1414 | 17..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:18 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20427947..20427994 | 1280..1327 | 100 | <- | Minus |
X | 20428064..20428172 | 1171..1279 | 100 | <- | Minus |
X | 20428233..20428699 | 704..1170 | 100 | <- | Minus |
X | 20428819..20429437 | 85..703 | 100 | <- | Minus |
X | 20429503..20429570 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:24 Download gff for
BS13736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20298974..20299021 | 1280..1327 | 100 | <- | Minus |
arm_X | 20299091..20299199 | 1171..1279 | 100 | <- | Minus |
arm_X | 20299260..20299726 | 704..1170 | 100 | <- | Minus |
arm_X | 20299846..20300464 | 85..703 | 100 | <- | Minus |
arm_X | 20300530..20300597 | 17..84 | 100 | | Minus |
BS13736.3prime Sequence
721 bp (591 high quality bases) assembled on 2006-10-13
> BS13736.3prime
ATGGTCTAGAAAGCTTCTAGCAGACTGCTTGTGGGATAATGACTTGGAAA
CTTAATGTCGGGATCTTGTAAAAGCCCTCCATTTGCGCAATGTCTTCGGC
GTGCGGCTCCTTGGAAGTGGAGGCGATCCACAGTCTACCACGGTGCTCGC
TGTACCACACTCGACCCTCGTGTTTCTTAATGCCCGCCACTAGAAGCGAA
GCCCAGGGCTGATGCATCGACAGACACTGGCGCATGTCCTGCATTTCCAG
CAGCTCCTTGTCCTGCACCCGATTGTAGGTCCTCTCCAGCCAATCGCTGC
CTGCTGCAGGAGCTGGCCAACTCTTGGATTCCTTACTGGGCTTGTAGACC
GGCGGCTTGGTCATGTTCAAATGTGGTGCCAGTGTCAAGGCGGAGTGGCC
GGTGACCGAGGATGCACTCCAGTTGGATCCAACACCCGAGGCTTTAGAAA
CGGCTGCTAGTTCGCTGATCACCTGCTGCTCGTACTCTTTGGAGATGGTC
GGTTCCTCCGGCAACTCTCGGCCAGCGAAGTCCCACCGGATCTTCCGCTT
CATGCGACTGCCGTGCTTTACCTCCTCCATTTCTCGGGGCAGTTTCTCAA
ACTTTTTCGCGCTCCGCGTCGCTCAGCCACACGGAGTTCTCCTGAAAGTA
ATCCAACTCATCGTCCAAAACTGTGGTCCTCTTCTCGCTGTTCTTTGCCA
ACTCCAACAAACAATCCCTTT
BS13736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PA | 1311 | CG11710-RA | 634..1311 | 695..17 | 3155 | 98.6 | Minus |
CG11710-PB | 1542 | CG11710-RB | 634..1263 | 695..65 | 2915 | 98.5 | Minus |
CG11710-PB | 1542 | CG11710-RB | 1276..1324 | 65..17 | 245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RA | 1766 | CG11710-RA | 711..1414 | 721..17 | 3275 | 97.7 | Minus |
CG11710-RC | 1903 | CG11710-RC | 711..1427 | 721..17 | 3135 | 96 | Minus |
CG11710-RB | 1779 | CG11710-RB | 711..1427 | 721..17 | 3135 | 96 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428233..20428705 | 174..647 | 2245 | 98.7 | Plus |
X | 23542271 | X | 20428064..20428172 | 65..173 | 545 | 100 | Plus |
X | 23542271 | X | 20427947..20427996 | 17..66 | 250 | 100 | Plus |
X | 23542271 | X | 20428818..20428898 | 641..721 | 240 | 86.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:41:16 has no hits.
BS13736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:29 Download gff for
BS13736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 623..1311 | 17..706 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:59 Download gff for
BS13736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 726..1417 | 12..706 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:39 Download gff for
BS13736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RA | 726..1417 | 12..706 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:39 Download gff for
BS13736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20427944..20427994 | 12..64 | 96 | <- | Plus |
X | 20428064..20428172 | 65..173 | 100 | <- | Plus |
X | 20428233..20428699 | 174..641 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:59 Download gff for
BS13736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20298971..20299021 | 12..64 | 96 | <- | Plus |
arm_X | 20299091..20299199 | 65..173 | 100 | <- | Plus |
arm_X | 20299260..20299726 | 174..641 | 98 | <- | Plus |
BS13736.5prime Sequence
697 bp (565 high quality bases) assembled on 2006-10-13
> BS13736.5prime
GAAGTTATCAGTCGACATGGAGAATTTCCTGCGGGGCACGTTGTCCAAAT
GTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGCCATACTGAACATC
AAAGACGACTATGAATTCGACAACTACTTTGGCAATTTACTGAGCGAGGA
CAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGCCGGATGCTACTGA
GTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTCGCCCCCTCTGGCA
CCCACATCACCCAATTGTCCCAAGCAAAATATCAGCAAGGGTGCCAAGGG
CAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGATGGTCGCGTCCAGG
GCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGATTGCCAGGCGGGC
CAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCCGGATCGTGTGCGA
GCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGATCCCGTGCGCACGC
CCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGAGAAGGGCGGCACG
AAGAGCGCCGCCAAGCAAGGCAAAAAATCCACCAAGGAACTGTCCACGCA
GGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTGCTGGAGTACGACA
AGAACAGCGAGAAAAGGACACAGTTATCGACGATGAGCTGGACTACT
BS13736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PB | 1542 | CG11710-RB | 1..682 | 17..697 | 3320 | 99.5 | Plus |
CG11710-PA | 1311 | CG11710-RA | 1..682 | 17..697 | 3320 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-RC | 1903 | CG11710-RC | 100..785 | 13..697 | 3360 | 99.4 | Plus |
CG11710-RA | 1766 | CG11710-RA | 100..785 | 13..697 | 3360 | 99.4 | Plus |
CG11710-RB | 1779 | CG11710-RB | 100..785 | 13..697 | 3360 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20428824..20429437 | 697..85 | 2990 | 99.5 | Minus |
X | 23542271 | X | 20429502..20429574 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed 2015-02-12 16:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10331..10370 | 554..593 | 119 | 77.5 | Plus |
BS13736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:29 Download gff for
BS13736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-PA | 1..682 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:00 Download gff for
BS13736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RB | 100..785 | 13..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:16 Download gff for
BS13736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11710-RB | 100..785 | 13..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:16 Download gff for
BS13736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20428824..20429437 | 85..697 | 99 | <- | Minus |
X | 20429503..20429574 | 13..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:00 Download gff for
BS13736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20299851..20300464 | 85..697 | 99 | <- | Minus |
arm_X | 20300530..20300601 | 13..84 | 98 | | Minus |
BS13736.pep Sequence
Translation from 16 to 1326
> BS13736.pep
MENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNLLSEDNEEHR
MFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISKGAKGKSGKH
VNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGRIVCEQEGSG
PCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKELSTQALDKA
LAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAEREKFEKLHREM
EEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELAAVSKASGVG
SNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPAAGSDWLERT
YNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLW
IASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVC*
BS13736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11710-PA | 436 | CG11710-PA | 1..436 | 1..436 | 2308 | 100 | Plus |
CG11710-PC | 513 | CG11710-PC | 1..422 | 1..422 | 2235 | 99.8 | Plus |
CG11710-PB | 513 | CG11710-PB | 1..422 | 1..422 | 2235 | 99.8 | Plus |