Clone Sequence Records
BS13738.3prime Sequence
603 bp (513 high quality bases) assembled on 2006-10-13
> BS13738.3prime
ATGGTCTAGAAAGCTTTCACTCGTACCACTCGTCCAGCACCAATGGAGTG
GTTGGATGAACTGGTGCCGTCAGACGCACCAGCATCTTGACCGTTACCAT
ATGGAGCGGTATGTTCTTAGCCCACGCCTTGCAGTGGATTTGGATGTCCT
CGTTGATCGGAATGTTGCTCAACCGAACACTGATGATGCGCCTGAGGCGG
GGATCCTCCTTGTAAGTAGGTCCGTCGTCGTCCGAAGACTCGTTGAGAAA
GACATTGCCGGAGGTGAAGAGCTCTTCGGCATCGAAGAAGCGAACCGGAT
GGTAGTCGAACTGAATGTCCACTCTTGGCTCAATAACCTGGCAGGACACC
CAGATGCGGTTGAAGCGCTCCTCCGAGCCCAGGCCCACCACATAGTCGAA
TAGCTCATCCGGAGCGTACTCGGGCAGCGTTAGGGCGTCATCGTAGGTTA
CCGCCTGGAAGCCCAATGCCTGGGTGATCTTTATTAGAATGCACGGCGTG
CCGGACATATAGCCCCAACTGTCGTCTATGTTACAGCCCATCAGGCGCTT
CGGGCCTTCAAGACCGTATCGTTTCACCGTTCGCATTATCGCGCGTTGTA
TGT
BS13738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 936 | CG5250-RA | 350..936 | 603..17 | 2910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 399..985 | 603..17 | 2920 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228292..19228878 | 17..603 | 2920 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:39:26 has no hits.
BS13738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:31 Download gff for
BS13738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 350..936 | 17..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:08 Download gff for
BS13738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 399..985 | 17..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:24 Download gff for
BS13738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 399..985 | 17..603 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:24 Download gff for
BS13738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228292..19228878 | 17..603 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:08 Download gff for
BS13738.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054014..15054600 | 17..603 | 99 | | Plus |
BS13738.5prime Sequence
626 bp (606 high quality bases) assembled on 2006-10-13
> BS13738.5prime
GAAGTTATCAGTCGACATGCCTAACGACGCGATAATCTATTCTGGTCCCT
ACGAATTGGGACGCCTTCGCCGGCGTCGTGATATGCGGGTGGCGGAGTAC
CTCTACAGGCGTTCCATTCGCACACGCAATGCGGATCCCGAGATGACCGT
GTGCCGTTTTATCAAACTGCTGCTCTACTTCATCGGATTCTTTTTCGTTC
TAGGCGTATTCACAACCGGATTGGCCCTCGTGATGATTGCGAATCATATA
TATCCGGATAGGCCGGGATGCAAAAAGTTCCCCGGACTAGCAACCGCGCC
CGGACACCATGTCGGCGATCAGAAGCAAATTATGTGGAGCCCTAATAACA
TTAAGGATGTGGCTAACATACAACGCGCGATAATGCGAACGGTGAAACGA
TACGGTCTCGAAGGCCCGAAGCGCCTGATGGGCTGTAACATAGACGACAG
TTGGGGCTATATGTCCGGCACGCCGTGCATTCTAATAAAGATCACCCAGG
CATTGGGCTTCCAGGCGGTAACCTACGATGACGCCCTAACGCTGCCCGAG
TACGCTCCGGATGAGCTATTCGACTATGTGGTGGGCCTGGGCTCGGAGGA
GCGCTTCAACCGCATCTGGGTGTCCT
BS13738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 936 | CG5250-RA | 1..610 | 17..626 | 2925 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 49..659 | 16..626 | 2980 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228618..19229228 | 626..16 | 2980 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:20:41 has no hits.
BS13738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:31 Download gff for
BS13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 1..610 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:40 Download gff for
BS13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..659 | 5..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:40 Download gff for
BS13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..659 | 5..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:40 Download gff for
BS13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228618..19229237 | 5..626 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:40 Download gff for
BS13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054340..15054959 | 5..626 | 98 | | Minus |
BS13738.complete Sequence
968 bp assembled on 2006-11-01
GenBank Submission: FJ637515
> BS13738.complete
GAAGTTATCAGTCGACATGCCTAACGACGCGATAATCTATTCTGGTCCCT
ACGAATTGGGACGCCTTCGCCGGCGTCGTGATATGCGGGTGGCGGAGTAC
CTCTACAGGCGTTCCATTCGCACACGCAATGCGGATCCCGAGATGACCGT
GTGCCGTTTTATCAAACTGCTGCTCTACTTCATCGGATTCTTTTTCGTTC
TAGGCGTATTCACAACCGGATTGGCCCTCGTGATGATTGCGAATCATATA
TATCCGGATAGGCCGGGATGCAAAAAGTTCCCCGGACTAGCAACCGCGCC
CGGACACCATGTCGGCGATCAGAAGCAAATTATGTGGAGCCCTAATAACA
TTAAGGATGTGGCTAACATACAACGCGCGATAATGCGAACGGTGAAACGA
TACGGTCTCGAAGGCCCGAAGCGCCTGATGGGCTGTAACATAGACGACAG
TTGGGGCTATATGTCCGGCACGCCGTGCATTCTAATAAAGATCACCCAGG
CATTGGGCTTCCAGGCGGTAACCTACGATGACGCCCTAACGCTGCCCGAG
TACGCTCCGGATGAGCTATTCGACTATGTGGTGGGCCTGGGCTCGGAGGA
GCGCTTCAACCGCATCTGGGTGTCCTGCCAGGTTATTGAGCCAAGAGTGG
ACATTCAGTTCGACTACCATCCGGTTCGCTTCTTCGATGCCGAAGAGCTC
TTCACCTCCGGCAATGTCTTTCTCAACGAGTCTTCGGACGACGACGGACC
TACTTACAAGGAGGATCCCCGCCTCAGGCGCATCATCAGTGTTCGGTTGA
GCAACATTCCGATCAACGAGGACATCCAAATCCACTGCAAGGCGTGGGCT
AAGAACATACCGCTCCATATGGTAACGGTCAAGATGCTGGTGCGTCTGAC
GGCACCAGTTCATCCAACCACTCCATTGGTGCTGGACGAGTGGTACGAGT
GAAAGCTTTCTAGACCAT
BS13738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 936 | CG5250-PA | 1..936 | 17..952 | 4605 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 49..985 | 16..952 | 4610 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228292..19229228 | 952..16 | 4610 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:33:02 has no hits.
BS13738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:08 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:32 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..985 | 5..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:44 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 50..984 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:08 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..985 | 5..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:09 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 50..984 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:09 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228293..19229227 | 17..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:44 Download gff for
BS13738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054015..15054949 | 17..951 | 99 | | Minus |
BS13738.pep Sequence
Translation from 16 to 951
> BS13738.pep
MPNDAIIYSGPYELGRLRRRRDMRVAEYLYRRSIRTRNADPEMTVCRFIK
LLLYFIGFFFVLGVFTTGLALVMIANHIYPDRPGCKKFPGLATAPGHHVG
DQKQIMWSPNNIKDVANIQRAIMRTVKRYGLEGPKRLMGCNIDDSWGYMS
GTPCILIKITQALGFQAVTYDDALTLPEYAPDELFDYVVGLGSEERFNRI
WVSCQVIEPRVDIQFDYHPVRFFDAEELFTSGNVFLNESSDDDGPTYKED
PRLRRIISVRLSNIPINEDIQIHCKAWAKNIPLHMVTVKMLVRLTAPVHP
TTPLVLDEWYE*
BS13738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 311 | CG5250-PA | 1..311 | 1..311 | 1665 | 100 | Plus |
| CG11703-PA | 353 | CG11703-PA | 1..260 | 1..283 | 191 | 23.4 | Plus |
| CG33310-PB | 876 | CG33310-PB | 659..841 | 103..281 | 187 | 25.3 | Plus |
