Clone Sequence Records
BS13746.3prime Sequence
624 bp (503 high quality bases) assembled on 2006-10-13
> BS13746.3prime
ATGGTCTAGAAAGCTTCTATCTCCCTCCGCGTTTCTTTCTTTTGGCCTCC
GGCTCGTCCAGACTGTTGGATCTGCGCGGGGCCTCCTGCCCTCTGGCGGC
ACCACTAGTGCCTGGTCCTCGCCCTGGCTCCTGGCTACCTCCTGGCTCGG
GCAGAGCTAGGGCGCCCCGCCACGAAAGCACCGGATGCACCAAGGTGGAT
AGAATGGTGGTTCGGCCGGGCTTGGGTGACAGGCGATAGGTGCGAGTTGG
TGGGACCTGGCGGGGGAGCTGCTCGGGCCATTGCACCGAGAAGTCGCAGC
GCACGACGCAGAGGCTGACCTTGCCTCCGGAGCACAGGTCGTTCTTCATG
CCCGCGGCCACGGCGTCGCAAGCCAGGGCGCAGGCGGACTCCTCGGAGAG
GTCCTCCGACCACCGTGACTCCAGGATGGACATGGATACCTGGTAGCCGG
AGCCGATGGACGTGAAGGGCGCCGTGTCCGTGGAGCCGTCGCTGCGGGTG
CAGAAGAGATGCGCTCCGGTGTTATCCGCGCCGCCTATGATCATGTCGGC
ATCTATATTCCCGTTGAAACGGAACAGCAGCTGCCGTATCATCTGGTTGG
CACAGCACACCGGCACTTTGCGGA
BS13746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12161-PA | 969 | CG12161-RA | 362..969 | 624..17 | 3015 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R2-RA | 1319 | CG12161-RA | 454..1061 | 624..17 | 3025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5218009..5218616 | 17..624 | 3025 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:54:16 has no hits.
BS13746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:37 Download gff for
BS13746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12161-PA | 363..969 | 17..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:47 Download gff for
BS13746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 373..979 | 17..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:31 Download gff for
BS13746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 455..1061 | 17..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:31 Download gff for
BS13746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5218009..5218615 | 17..623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:47 Download gff for
BS13746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1043731..1044337 | 17..623 | 99 | | Plus |
BS13746.5prime Sequence
668 bp (593 high quality bases) assembled on 2006-10-13
> BS13746.5prime
GAAGTTATCAGTCGACATGTTCAACGGCTTACCAACCTTGATGAAATACC
CAGACCGATCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAAT
TGTCTGCGCAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAG
CTTTACTACTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAA
TCATAGGCGCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAG
ACGTGCCGCAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGC
TGGAACCGCTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGC
TGGAGCTTCACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGT
GCCAACCAGATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGA
TGCCGACATGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCT
GCACCCGCAGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGC
TCCGGCTACCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGA
CCTCTCCGAGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGG
GCATGAAGACCGACCTGT
BS13746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12161-PA | 969 | CG12161-RA | 1..652 | 17..668 | 3210 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R2-RA | 1319 | CG12161-RA | 93..744 | 17..668 | 3230 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5218326..5218705 | 668..289 | 1870 | 99.5 | Minus |
3R | 32079331 | 3R | 5218771..5218951 | 288..108 | 905 | 100 | Minus |
3R | 32079331 | 3R | 5219345..5219436 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:19 has no hits.
BS13746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:37 Download gff for
BS13746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12161-PA | 1..652 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:46 Download gff for
BS13746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 11..662 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:33 Download gff for
BS13746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 93..744 | 17..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:33 Download gff for
BS13746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5218326..5218705 | 289..668 | 99 | <- | Minus |
3R | 5218771..5218950 | 109..288 | 100 | <- | Minus |
3R | 5219345..5219436 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:46 Download gff for
BS13746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1045067..1045158 | 17..108 | 100 | | Minus |
arm_3R | 1044048..1044427 | 289..668 | 99 | <- | Minus |
arm_3R | 1044493..1044672 | 109..288 | 100 | <- | Minus |
BS13746.complete Sequence
1001 bp assembled on 2006-11-01
GenBank Submission: FJ637516
> BS13746.complete
GAAGTTATCAGTCGACATGTTCAACGGCTTACCAACCTTGATGAAATACC
CAGACCGATCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAAT
TGTCTGCGCAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAG
CTTTACTACTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAA
TCATAGGCGCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAG
ACGTGCCGCAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGC
TGGAACCGCTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGC
TGGAGCTTCACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGT
GCCAACCAGATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGA
TGCCGACATGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCT
GCACCCGCAGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGC
TCCGGCTACCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGA
CCTCTCCGAGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGG
GCATGAAGAACGACCTGTGCTCCGGAGGCAAGGTCAGCCTCTGCGTCGTG
CGCTGCGACTTCTCGGTGCAATGGCCCGAGCAGCTCCCCCGCCAGGTCCC
ACCAACTCGCACCTATCGCCTGTCACCCAAGCCCGGCCGAACCACCATTC
TATCCACCTTGGTGCATCCGGTGCTTTCGTGGCGGGGCGCCCTAGCTCTG
CCCGAGCCAGGAGGTAGCCAGGAGCCAGGGCGAGGACCAGGCACTAGTGG
TGCCGCCAGAGGGCAGGAGGCCCCGCGCAGATCCAACAGTCTGGACGAGC
CGGAGGCCAAAAGAAAGAAACGCGGAGGGAGATAGAAGCTTTCTAGACCA
T
BS13746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R2-RA | 969 | CG12161-PA | 1..969 | 17..985 | 4830 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R2-RA | 1319 | CG12161-RA | 93..1061 | 17..985 | 4830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5218009..5218705 | 985..289 | 3470 | 99.9 | Minus |
3R | 32079331 | 3R | 5218771..5218951 | 288..108 | 905 | 100 | Minus |
3R | 32079331 | 3R | 5219345..5219436 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:05:18 has no hits.
BS13746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:09 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12161-RA | 1..969 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:34 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12161-RA | 11..979 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:35 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 16..979 | 22..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:10 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12161-RA | 11..979 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:12 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2R2-RA | 98..1061 | 22..985 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:12 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5218009..5218705 | 289..985 | 99 | <- | Minus |
3R | 5218771..5218950 | 109..288 | 100 | <- | Minus |
3R | 5219345..5219431 | 22..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:35 Download gff for
BS13746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1043731..1044427 | 289..985 | 99 | <- | Minus |
arm_3R | 1044493..1044672 | 109..288 | 100 | <- | Minus |
arm_3R | 1045067..1045153 | 22..108 | 100 | | Minus |
BS13746.pep Sequence
Translation from 16 to 984
> BS13746.pep
MFNGLPTLMKYPDRSPFLCGPSGFTFDNCLRNKQLKENGLEEPNSFTTGT
TVVGIVFDGGVIIGAESRATSGGIVFSKTCRKIIELQANIFAAGAGTARD
TKALVELTRAQLELHRMNTGFRKVPVCCANQMIRQLLFRFNGNIDADMII
GGADNTGAHLFCTRSDGSTDTAPFTSIGSGYQVSMSILESRWSEDLSEES
ACALACDAVAAGMKNDLCSGGKVSLCVVRCDFSVQWPEQLPRQVPPTRTY
RLSPKPGRTTILSTLVHPVLSWRGALALPEPGGSQEPGRGPGTSGAARGQ
EAPRRSNSLDEPEAKRKKRGGR*
BS13746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2R2-PA | 322 | CG12161-PA | 1..322 | 1..322 | 1693 | 100 | Plus |
Prosbeta2-PA | 272 | CG3329-PA | 12..268 | 22..279 | 533 | 43.7 | Plus |
Prosbeta2R1-PA | 307 | CG18341-PA | 21..264 | 22..266 | 516 | 43.3 | Plus |
Prosbeta5-PA | 282 | CG12323-PA | 47..255 | 26..231 | 210 | 27.6 | Plus |
Prosbeta5-PB | 282 | CG12323-PB | 47..255 | 26..231 | 210 | 27.6 | Plus |