Clone Sequence Records
BS13747.3prime Sequence
741 bp (656 high quality bases) assembled on 2006-10-13
> BS13747.3prime
ATGGTCTAGAAAGCTTTTATTTCTTCACCACCTGGATGACGTCCTCGTCG
GCCATCACATGGGCAATCCCCACGCGCTGCGGCGAGTATTTCGTGGAGGT
GCCCCACACCAGGGCATACTTGAACTGCGCCGCCAGCGTGCGATGGATGG
CATGGCACACATGCTCCACACTGACGCCCTTTCTCAGAATCAATCCATCG
TCAAAGTCTGGAGGAGCGCCTGGCTTCTTTGTGTACACTCTGATGAGCTG
GAGAGCTTCCCAGAGCGCCTCCATCATGTAGTCCAGATTAAGTTTCATGT
TGCAACTAACCACTATCGAGTTTGGCTGGCGCGCCAAGCGGTCCACCTCC
TCGATGGAGATCTGATCGATCTTGTTGTAGACATACAGACAGGGCAGATA
CACACGGTTGGCGGTGACCACGTCGATGAACTCGTCCTCGGTGCAGTCTT
CGCGGAAGAGCACCTCGGCGTTGAAGATCTTGAAGGAGTGCAGGATGGTC
TGGACCATTTTCTCGTTGCAGCGCGTAAGGGAACAGGTGGCGTTGAAGCT
CANGCCGCCGCCCTTCTTCTGCTTGAAGTAGATGTTGGGCTTGCGCTTGT
TCAGACGAATGCCCACGCTCTCCAGCTCTCGCTCGAGCAGCTCCCGGTGA
ACGTTGGGCTTGGTGGCGTCCAGCATCATCAGCACCAAATCAGCGGTGCG
GGCTACGGCAATGACCTGACGACCACGCCCCCTTGCCCTGG
BS13747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 1092 | CG6195-RA | 378..1092 | 731..17 | 3556 | 99.8 | Minus |
CG8340-PA | 1107 | 128up-RA | 742..777 | 376..341 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 487..1211 | 741..16 | 3594 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647212..19647765 | 178..731 | 2759 | 99.8 | Plus |
3R | 32079331 | 3R | 19646969..19647133 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:53:27 has no hits.
BS13747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:38 Download gff for
BS13747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 369..1092 | 17..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:47 Download gff for
BS13747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 579..1307 | 11..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:56 Download gff for
BS13747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 487..1215 | 11..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:56 Download gff for
BS13747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19646965..19647131 | 11..178 | 98 | <- | Plus |
3R | 19647213..19647774 | 179..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:47 Download gff for
BS13747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15472687..15472853 | 11..178 | 98 | <- | Plus |
arm_3R | 15472935..15473496 | 179..741 | 99 | | Plus |
BS13747.5prime Sequence
713 bp (605 high quality bases) assembled on 2006-10-13
> BS13747.5prime
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCG
BS13747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 1092 | CG6195-RA | 1..697 | 17..713 | 3435 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 118..815 | 16..713 | 3460 | 99.7 | Plus |
128up-RA | 1304 | CG8340-RA | 440..548 | 322..430 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647446..19647878 | 713..281 | 2165 | 100 | Minus |
3R | 32079331 | 3R | 19647931..19648133 | 281..79 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 19648229..19648293 | 80..16 | 295 | 96.9 | Minus |
2R | 25286936 | 2R | 12037922..12038030 | 322..430 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:17 has no hits.
BS13747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:38 Download gff for
BS13747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-PA | 1..697 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:51 Download gff for
BS13747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..907 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12 Download gff for
BS13747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 112..815 | 9..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:12 Download gff for
BS13747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19647446..19647877 | 282..713 | 100 | <- | Minus |
3R | 19647931..19648131 | 81..281 | 100 | <- | Minus |
3R | 19648229..19648296 | 9..80 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:51 Download gff for
BS13747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15473168..15473599 | 282..713 | 100 | <- | Minus |
arm_3R | 15473653..15473853 | 81..281 | 100 | <- | Minus |
arm_3R | 15473951..15474018 | 9..80 | 91 | | Minus |
BS13747.complete Sequence
1124 bp assembled on 2006-11-01
GenBank Submission: FJ637517
> BS13747.complete
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGAGGAGGTGGACCGCTTGGCGCGCCAGC
CAAACTCGATAGTGGTTAGTTGCAACATGAAACTTAATCTGGACTACATG
ATGGAGGCGCTCTGGGAAGCTCTCCAGCTCATCAGAGTGTACACAAAGAA
GCCAGGCGCTCCTCCAGACTTTGACGATGGATTGATTCTGAGAAAGGGCG
TCAGTGTGGAGCATGTGTGCCATGCCATCCATCGCACGCTGGCGGCGCAG
TTCAAGTATGCCCTGGTGTGGGGCACCTCCACGAAATACTCGCCGCAGCG
CGTGGGGATTGCCCATGTGATGGCCGACGAGGACGTCATCCAGGTGGTGA
AGAAATAAAAGCTTTCTAGACCAT
BS13747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1092 | CG6195-PA | 1..1092 | 17..1108 | 5430 | 99.8 | Plus |
128up-RA | 1107 | CG8340-PA | 315..423 | 322..430 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-RA | 1250 | CG6195-RA | 118..1211 | 16..1109 | 5440 | 99.8 | Plus |
128up-RA | 1304 | CG8340-RA | 440..548 | 322..430 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19647212..19647878 | 947..281 | 3335 | 100 | Minus |
3R | 32079331 | 3R | 19647931..19648133 | 281..79 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 19646969..19647133 | 1109..945 | 825 | 100 | Minus |
3R | 32079331 | 3R | 19648229..19648293 | 80..16 | 295 | 96.9 | Minus |
2R | 25286936 | 2R | 12037922..12038030 | 322..430 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:00 has no hits.
BS13747.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:11 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 1..1092 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:36 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..1307 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:52 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 211..1293 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:11 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 204..1307 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:12 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6195-RA | 119..1201 | 17..1099 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:12 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19646979..19647131 | 947..1099 | 100 | <- | Minus |
3R | 19647213..19647877 | 282..946 | 100 | <- | Minus |
3R | 19647931..19648131 | 81..281 | 100 | <- | Minus |
3R | 19648229..19648292 | 17..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:52 Download gff for
BS13747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15472701..15472853 | 947..1099 | 100 | <- | Minus |
arm_3R | 15472935..15473599 | 282..946 | 100 | <- | Minus |
arm_3R | 15473653..15473853 | 81..281 | 100 | <- | Minus |
arm_3R | 15473951..15474014 | 17..80 | 96 | | Minus |
BS13747.pep Sequence
Translation from 16 to 1107
> BS13747.pep
MGILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEK
GDGFDVLKSGDARVALIGFPSVGKSTMLSTLTKTESEAANYEFTTLTCIP
GVIEYQGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK
PNVHRELLERELESVGIRLNKRKPNIYFKQKKGGGLSFNATCSLTRCNEK
MVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYLPCLYVYNKIDQI
SIEEVDRLARQPNSIVVSCNMKLNLDYMMEALWEALQLIRVYTKKPGAPP
DFDDGLILRKGVSVEHVCHAIHRTLAAQFKYALVWGTSTKYSPQRVGIAH
VMADEDVIQVVKK*
BS13747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6195-PA | 363 | CG6195-PA | 1..363 | 1..363 | 1853 | 100 | Plus |
128up-PA | 368 | CG8340-PA | 4..367 | 3..363 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 206..319 | 62..172 | 191 | 40.4 | Plus |