Clone BS13747 Report

Search the DGRC for BS13747

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG6195-RA
Protein status:BS13747.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13747.3prime Sequence

741 bp (656 high quality bases) assembled on 2006-10-13

> BS13747.3prime
ATGGTCTAGAAAGCTTTTATTTCTTCACCACCTGGATGACGTCCTCGTCG
GCCATCACATGGGCAATCCCCACGCGCTGCGGCGAGTATTTCGTGGAGGT
GCCCCACACCAGGGCATACTTGAACTGCGCCGCCAGCGTGCGATGGATGG
CATGGCACACATGCTCCACACTGACGCCCTTTCTCAGAATCAATCCATCG
TCAAAGTCTGGAGGAGCGCCTGGCTTCTTTGTGTACACTCTGATGAGCTG
GAGAGCTTCCCAGAGCGCCTCCATCATGTAGTCCAGATTAAGTTTCATGT
TGCAACTAACCACTATCGAGTTTGGCTGGCGCGCCAAGCGGTCCACCTCC
TCGATGGAGATCTGATCGATCTTGTTGTAGACATACAGACAGGGCAGATA
CACACGGTTGGCGGTGACCACGTCGATGAACTCGTCCTCGGTGCAGTCTT
CGCGGAAGAGCACCTCGGCGTTGAAGATCTTGAAGGAGTGCAGGATGGTC
TGGACCATTTTCTCGTTGCAGCGCGTAAGGGAACAGGTGGCGTTGAAGCT
CANGCCGCCGCCCTTCTTCTGCTTGAAGTAGATGTTGGGCTTGCGCTTGT
TCAGACGAATGCCCACGCTCTCCAGCTCTCGCTCGAGCAGCTCCCGGTGA
ACGTTGGGCTTGGTGGCGTCCAGCATCATCAGCACCAAATCAGCGGTGCG
GGCTACGGCAATGACCTGACGACCACGCCCCCTTGCCCTGG

BS13747.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 1092 CG6195-RA 378..1092 731..17 3556 99.8 Minus
CG8340-PA 1107 128up-RA 742..777 376..341 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 487..1211 741..16 3594 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647212..19647765 178..731 2759 99.8 Plus
3R 32079331 3R 19646969..19647133 16..180 825 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:53:27 has no hits.

BS13747.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:38 Download gff for BS13747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 369..1092 17..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:47 Download gff for BS13747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 579..1307 11..741 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:56 Download gff for BS13747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 487..1215 11..741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:56 Download gff for BS13747.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19646965..19647131 11..178 98 <- Plus
3R 19647213..19647774 179..741 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:47 Download gff for BS13747.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15472687..15472853 11..178 98 <- Plus
arm_3R 15472935..15473496 179..741 99   Plus

BS13747.5prime Sequence

713 bp (605 high quality bases) assembled on 2006-10-13

> BS13747.5prime
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCG

BS13747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 1092 CG6195-RA 1..697 17..713 3435 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 118..815 16..713 3460 99.7 Plus
128up-RA 1304 CG8340-RA 440..548 322..430 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647446..19647878 713..281 2165 100 Minus
3R 32079331 3R 19647931..19648133 281..79 1015 100 Minus
3R 32079331 3R 19648229..19648293 80..16 295 96.9 Minus
2R 25286936 2R 12037922..12038030 322..430 215 79.8 Plus
Blast to na_te.dros performed on 2015-02-10 20:59:17 has no hits.

BS13747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:38 Download gff for BS13747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-PA 1..697 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:51 Download gff for BS13747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..907 9..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12 Download gff for BS13747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 112..815 9..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:12 Download gff for BS13747.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19647446..19647877 282..713 100 <- Minus
3R 19647931..19648131 81..281 100 <- Minus
3R 19648229..19648296 9..80 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:51 Download gff for BS13747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15473168..15473599 282..713 100 <- Minus
arm_3R 15473653..15473853 81..281 100 <- Minus
arm_3R 15473951..15474018 9..80 91   Minus

BS13747.complete Sequence

1124 bp assembled on 2006-11-01

GenBank Submission: FJ637517

> BS13747.complete
GAAGTTATCAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGC
GCGAGATTGCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGC
CTGCTGAAGGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATC
CAAGAAGGGCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACG
CCCGGGTGGCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTG
TCCACTTTGACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCAC
TTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGT
TGCTGGATCTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGT
GGTCGTCAGGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGAT
GCTGGACGCCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGC
TGGAGAGCGTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTC
AAGCAGAAGAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTAC
GCGCTGCAACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCT
TCAACGCCGAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATC
GACGTGGTCACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAA
CAAGATCGATCAGATCTCCATCGAGGAGGTGGACCGCTTGGCGCGCCAGC
CAAACTCGATAGTGGTTAGTTGCAACATGAAACTTAATCTGGACTACATG
ATGGAGGCGCTCTGGGAAGCTCTCCAGCTCATCAGAGTGTACACAAAGAA
GCCAGGCGCTCCTCCAGACTTTGACGATGGATTGATTCTGAGAAAGGGCG
TCAGTGTGGAGCATGTGTGCCATGCCATCCATCGCACGCTGGCGGCGCAG
TTCAAGTATGCCCTGGTGTGGGGCACCTCCACGAAATACTCGCCGCAGCG
CGTGGGGATTGCCCATGTGATGGCCGACGAGGACGTCATCCAGGTGGTGA
AGAAATAAAAGCTTTCTAGACCAT

BS13747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1092 CG6195-PA 1..1092 17..1108 5430 99.8 Plus
128up-RA 1107 CG8340-PA 315..423 322..430 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-RA 1250 CG6195-RA 118..1211 16..1109 5440 99.8 Plus
128up-RA 1304 CG8340-RA 440..548 322..430 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19647212..19647878 947..281 3335 100 Minus
3R 32079331 3R 19647931..19648133 281..79 1015 100 Minus
3R 32079331 3R 19646969..19647133 1109..945 825 100 Minus
3R 32079331 3R 19648229..19648293 80..16 295 96.9 Minus
2R 25286936 2R 12037922..12038030 322..430 215 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:00 has no hits.

BS13747.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:11 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 1..1092 17..1108 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:36 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..1307 9..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:52 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 211..1293 17..1099 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:11 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 204..1307 9..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:12 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
CG6195-RA 119..1201 17..1099 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:12 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19646979..19647131 947..1099 100 <- Minus
3R 19647213..19647877 282..946 100 <- Minus
3R 19647931..19648131 81..281 100 <- Minus
3R 19648229..19648292 17..80 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:52 Download gff for BS13747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15472701..15472853 947..1099 100 <- Minus
arm_3R 15472935..15473599 282..946 100 <- Minus
arm_3R 15473653..15473853 81..281 100 <- Minus
arm_3R 15473951..15474014 17..80 96   Minus

BS13747.pep Sequence

Translation from 16 to 1107

> BS13747.pep
MGILEKIAEIEREIARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGEK
GDGFDVLKSGDARVALIGFPSVGKSTMLSTLTKTESEAANYEFTTLTCIP
GVIEYQGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDATK
PNVHRELLERELESVGIRLNKRKPNIYFKQKKGGGLSFNATCSLTRCNEK
MVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYLPCLYVYNKIDQI
SIEEVDRLARQPNSIVVSCNMKLNLDYMMEALWEALQLIRVYTKKPGAPP
DFDDGLILRKGVSVEHVCHAIHRTLAAQFKYALVWGTSTKYSPQRVGIAH
VMADEDVIQVVKK*

BS13747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6195-PA 363 CG6195-PA 1..363 1..363 1853 100 Plus
128up-PA 368 CG8340-PA 4..367 3..363 1056 56.3 Plus
CG13390-PA 381 CG13390-PA 206..319 62..172 191 40.4 Plus