Clone Sequence Records
BS13748.3prime Sequence
644 bp (549 high quality bases) assembled on 2006-10-13
> BS13748.3prime
ATGGTCTAGAAAGCTTTCAGTGCTTGGATTTTGATTTTTTCGCCTTTCTC
CCCAGAGCGTCGAAAATGTTTGGTTTCAATTGCGGCACATGGTCAAGGAT
GTACGGAGGACGTACGTCCATAATTTCCCGCGTGTAGTGGTTGCCGTGCT
TGGTCTTGCGCAGCCGATCCAATTCAATGGTAGCCTTTATTGACGGCCTG
GAGCCCTCCGCTGGAGTGATCTTTATCTTGGTGCAGTGCCCCCGCTCCAA
ATAGTTAATAGTGGCGATCAGGGAATGTATATCAGCGATGACGGACGAGG
TCTGCTCGTGGATTTTTAGCAGAGCCTTCAGATTGGCATATATCCTGGCC
AGCCGTTTGTCCACGGGGGATTGATTATTAGGATCACAGTTCTTTTTCTG
ATGCGGAACTGAGTACTTGATGAACTGGCGTTCGTTGCCCTTCGGTGGTT
CAGGAGTCTCCTTGCACGGCTTGGGCACCAACCGCTCCGACACCTCCATT
CAGTCGCACCTGCTCATCCAAACTGCTCAAGGGCAGCTTTCGCATTATGC
GGCGCAGCTGCTTGCCCTTTTTGGGCGTGAGCAGGGGGTGTTGCTTCTGA
AAGCGCTCCACTCCGCGGTGCAAGTTCTCCATCATCTTTTCCCA
BS13748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-PA | 792 | CG5478-RA | 310..792 | 499..17 | 2390 | 99.7 | Minus |
| CG5478-PA | 792 | CG5478-RA | 171..310 | 639..500 | 625 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-RA | 1035 | CG5478-RA | 214..841 | 644..16 | 3045 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15932894..15933521 | 16..644 | 3020 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:54:08 has no hits.
BS13748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:39 Download gff for
BS13748.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-PA | 167..792 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:55 Download gff for
BS13748.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 215..849 | 8..643 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:00 Download gff for
BS13748.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 215..849 | 8..643 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:00 Download gff for
BS13748.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15932886..15933520 | 8..643 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:55 Download gff for
BS13748.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11758608..11759242 | 8..643 | 98 | | Plus |
BS13748.5prime Sequence
666 bp (635 high quality bases) assembled on 2006-10-13
> BS13748.5prime
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCG
BS13748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-PA | 792 | CG5478-RA | 1..650 | 17..666 | 3250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-RA | 1035 | CG5478-RA | 49..698 | 17..666 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15933037..15933686 | 666..17 | 3250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:33 has no hits.
BS13748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:39 Download gff for
BS13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-PA | 1..650 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:56 Download gff for
BS13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 39..698 | 3..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:44 Download gff for
BS13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 39..698 | 3..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:44 Download gff for
BS13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15933037..15933696 | 3..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:56 Download gff for
BS13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11758759..11759418 | 3..666 | 99 | | Minus |
BS13748.complete Sequence
824 bp assembled on 2006-11-01
GenBank Submission: FJ637518
> BS13748.complete
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCGCAAGACCAAGCACGGCAACCACTACACGCGGGAA
ATTATGGACGTACGTCCTCCGTACATCCTTGACCATGTGCCGCAATTGAA
ACCAAACATTTTCGACGCTCTGGGGAGAAAGGCGAAAAAATCAAAATCCA
AGCACTGAAAGCTTTCTAGACCAT
BS13748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-RA | 792 | CG5478-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-RA | 1035 | CG5478-RA | 49..841 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15932894..15933686 | 809..17 | 3965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:56 has no hits.
BS13748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:12 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:37 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 39..849 | 3..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:27:19 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 49..839 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:12 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 39..849 | 3..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:37 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5478-RA | 49..839 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:37 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15932896..15933686 | 17..807 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:27:19 Download gff for
BS13748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11758618..11759408 | 17..807 | 100 | | Minus |
BS13748.pep Sequence
Translation from 16 to 807
> BS13748.pep
MIQEPNWKKDYDRLVREHLNDQNQTKSLQRQIRHFRSKRVRLQNEIEAES
RSMDVWVKMMENLHRGVERFQKHHHLLTPKKRKQLRRIMRKLPLSSLDEQ
VRLMEVSERLVPKPCKETPEPPKGNERQFIKYSVPHQKKNCDPNNQSPVD
KRLARIYANLKALLKIHEQTSSVIADIHSLIATINYLERGHCTKIKITPA
EGSRPSIKATIELDRLRKTKHGNHYTREIMDVRPPYILDHVPQLKPNIFD
ALGRKAKKSKSKH*
BS13748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5478-PA | 263 | CG5478-PA | 1..263 | 1..263 | 1381 | 100 | Plus |
