Clone Sequence Records
BS13751.3prime Sequence
688 bp (597 high quality bases) assembled on 2006-10-13
> BS13751.3prime
ATGGTCTAGAAAGCTTCTACTTCATCAAATTCCTCACAATGTCTACAGGA
AAAGGAAAGACGTAGGACCGGGTGTCATCATTGCAGATGGAGTTCAGTGT
TTGCAAGTACCGTAGCTGCAGGGCTATGGGGTTGGTCTCCATTATGTCGG
CAGCCTCCTTCAGAGCAGTTACCGCATCTCGCTCCCCCTGCGCCGCGGCC
ACCTTGGCCTTGGCCTCACGCATCGCCTCCTGTTCCACAGCCAGGGCGCG
CTTCAGTTGATCAGGCATGAAGATCTCCTTGATCTCGACCCGTTCCACGC
GTATGCCCCAGGGCTCTGTGGAGTTGTACAATATACCCTCTATTTGGTTG
GAGAGGTACTCCTTGGACGAGAGCAAATCCATTAGCTTGTGGGTGCCGGC
CACGTTACGCAGCGTGGTCATTGCTAGCTTCTCGGTCGCCTCCTCCGGAT
CGTATACTTGCAGCATGGCGTCGAATGGGCTCTTGATGCTGTAGTACACC
ACTCCGTCGATGCTGATCGTCACCATGTCACGAGTGAGGATTTCCTGTCT
ATGTAGGTCAAATGACCTGGTACGTATGTCCACAACAGCGAGGTCATCAA
TGCAGGGCACGAGAAAGATGACGCCTGGCCCCCTCGGGGGCTTAGGGCGC
AAGCGACCCAGGCGCATGATTACCGCTCGCTCGTACTC
BS13751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 882 | CG14644-RA | 211..882 | 688..17 | 3310 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RB | 995 | CG14644-RB | 240..911 | 688..17 | 3330 | 99.7 | Minus |
CG14644-RA | 1034 | CG14644-RA | 279..950 | 688..17 | 3330 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252704 | 282..688 | 2005 | 99.5 | Plus |
3R | 32079331 | 3R | 4251978..4252242 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:45:42 has no hits.
BS13751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:41 Download gff for
BS13751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 211..882 | 17..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:54 Download gff for
BS13751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 279..954 | 11..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:14 Download gff for
BS13751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 279..954 | 11..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:14 Download gff for
BS13751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4251974..4252242 | 11..281 | 98 | <- | Plus |
3R | 4252298..4252704 | 282..688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:54 Download gff for
BS13751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77696..77964 | 11..281 | 98 | <- | Plus |
arm_3R | 78020..78426 | 282..688 | 99 | | Plus |
BS13751.5prime Sequence
763 bp (672 high quality bases) assembled on 2006-10-13
> BS13751.5prime
GAAGTTATCAGTCGACATGGACAATAATCCGACGACCCCTGCTTTGCTTG
CTCAGAGCTCCTCGGTAAACGTGTTCCACGATGAATCACTGTTACCTCAG
CGTAATGTAAAAACAAGTGAGAATGTTCCACCAACTTGTGCGGAGAAAAC
GTTGTTTGTGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCC
TATTCTGCTGTCTCAGGGTAATGTCGGAGTACGAGCGAGCGGTAATCCTG
CGCCTGGGTCGCCTGCGCCCTAAGCCCCCGAGGGGGCCAGGCGTCATCTT
TCTCGTGCCCTGCATTGATGACCTCGCTGTTGTGGACATACGTACCAGGT
CATTTGACCTACATAGACAGGAAATCCTCACTCGTGACATGGTGACGATC
AGCATCGACGGAGTGGTGTACTACAGCATCAAGAGCCCATTCGACGCCAT
GCTGCAAGTATACGATCCGGAGGAGGCGACCGAGAAGCTAGCAATGACCA
CGCTGCGTAACGTGGCCGGCACCCACAAGCTAATGGATTTGCTCTCGTCC
AAGGAGTACCTCTCCAACCAAATAGAGGGTATATTGTACAACTCCACAGA
GCCCTGGGGCATACGCGTGGAACGGGTCGAGATCAAGGAGATCTTCATGC
CTGATCAACTGAAGCGCGCCCTGGCTGTGGAACAGGAGGCGATGCGTGAG
GCCAAGCCAAAGTGGCCGCGGCGCAAGGGGAGCGAGATGCGGTAACTGCT
CTGAAGGAAGCTG
BS13751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 882 | CG14644-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
CG14644-PA | 882 | CG14644-RA | 691..743 | 706..758 | 215 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 1034 | CG14644-RA | 69..816 | 17..763 | 3670 | 99.5 | Plus |
CG14644-RB | 995 | CG14644-RB | 228..777 | 215..763 | 2680 | 99.3 | Plus |
CG14644-RB | 995 | CG14644-RB | 69..170 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252814 | 633..117 | 2585 | 100 | Minus |
3R | 32079331 | 3R | 4252112..4252242 | 763..634 | 560 | 96.9 | Minus |
3R | 32079331 | 3R | 4252874..4252975 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:40:34 has no hits.
BS13751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:42 Download gff for
BS13751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-PA | 1..748 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:21 Download gff for
BS13751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..816 | 11..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:35 Download gff for
BS13751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..816 | 11..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:35 Download gff for
BS13751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4252112..4252242 | 634..763 | 96 | <- | Minus |
3R | 4252298..4252814 | 117..633 | 100 | <- | Minus |
3R | 4252876..4252978 | 11..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:21 Download gff for
BS13751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77834..77964 | 634..763 | 96 | <- | Minus |
arm_3R | 78020..78536 | 117..633 | 100 | <- | Minus |
arm_3R | 78598..78700 | 11..116 | 97 | | Minus |
BS13751.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637519
> BS13751.complete
GAAGTTATCAGTCGACATGGACAATAATCCGACGACCCCTGCTTTGCTTG
CTCAGAGCTCCTCGGTAAACGTGTTCCACGATGAATCACTGTTACCTCAG
CGTAATGTAAAAACAAGTGAGAATGTTCCACCAACTTGTGCGGAGAAAAC
GTTGTTTGTGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCC
TATTCTGCTGTCTCAGGGTAATGTCGGAGTACGAGCGAGCGGTAATCCTG
CGCCTGGGTCGCCTGCGCCCTAAGCCCCCGAGGGGGCCAGGCGTCATCTT
TCTCGTGCCCTGCATTGATGACCTCGCTGTTGTGGACATACGTACCAGGT
CATTTGACCTACATAGACAGGAAATCCTCACTCGTGACATGGTGACGATC
AGCATCGACGGAGTGGTGTACTACAGCATCAAGAGCCCATTCGACGCCAT
GCTGCAAGTATACGATCCGGAGGAGGCGACCGAGAAGCTAGCAATGACCA
CGCTGCGTAACGTGGCCGGCACCCACAAGCTAATGGATTTGCTCTCGTCC
AAGGAGTACCTCTCCAACCAAATAGAGGGTATATTGTACAACTCCACAGA
GCCCTGGGGCATACGCGTGGAACGGGTCGAGATCAAGGAGATCTTCATGC
CTGATCAACTGAAGCGCGCCCTGGCTGTGGAACAGGAGGCGATGCGTGAG
GCCAAGGCCAAGGTGGCCGCGGCGCAGGGGGAGCGAGATGCGGTAACTGC
TCTGAAGGAGGCTGCCGACATAATGGAGACCAACCCCATAGCCCTGCAGC
TACGGTACTTGCAAACACTGAACTCCATCTGCAATGATGACACCCGGTCC
TACGTCTTTCCTTTTCCTGTAGACATTGTGAGGAATTTGATGAAGTAGAA
GCTTTCTAGACCAT
BS13751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 882 | CG14644-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG14644-RB | 678 | CG14644-PB | 1..678 | 221..898 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-RA | 1034 | CG14644-RA | 69..950 | 17..898 | 4410 | 100 | Plus |
CG14644-RB | 995 | CG14644-RB | 228..911 | 215..898 | 3420 | 100 | Plus |
CG14644-RB | 995 | CG14644-RB | 69..170 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4252298..4252814 | 633..117 | 2585 | 100 | Minus |
3R | 32079331 | 3R | 4251978..4252242 | 898..634 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 4252874..4252975 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:40:34 has no hits.
BS13751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:13 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:39 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..954 | 11..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:27 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 69..950 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:13 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 66..954 | 11..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:28 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14644-RA | 69..950 | 17..898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:28 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4252876..4252975 | 17..116 | 100 | | Minus |
3R | 4251978..4252242 | 634..898 | 100 | <- | Minus |
3R | 4252298..4252814 | 117..633 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:27 Download gff for
BS13751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 77700..77964 | 634..898 | 100 | <- | Minus |
arm_3R | 78020..78536 | 117..633 | 100 | <- | Minus |
arm_3R | 78598..78697 | 17..116 | 100 | | Minus |
BS13751.pep Sequence
Translation from 16 to 897
> BS13751.pep
MDNNPTTPALLAQSSSVNVFHDESLLPQRNVKTSENVPPTCAEKTLFVLS
MILIVLCLPWSLFCCLRVMSEYERAVILRLGRLRPKPPRGPGVIFLVPCI
DDLAVVDIRTRSFDLHRQEILTRDMVTISIDGVVYYSIKSPFDAMLQVYD
PEEATEKLAMTTLRNVAGTHKLMDLLSSKEYLSNQIEGILYNSTEPWGIR
VERVEIKEIFMPDQLKRALAVEQEAMREAKAKVAAAQGERDAVTALKEAA
DIMETNPIALQLRYLQTLNSICNDDTRSYVFPFPVDIVRNLMK*
BS13751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14644-PA | 293 | CG14644-PA | 1..293 | 1..293 | 1490 | 100 | Plus |
CG14644-PB | 225 | CG14644-PB | 1..225 | 69..293 | 1133 | 100 | Plus |
CG33253-PA | 367 | CG33253-PA | 33..315 | 5..288 | 692 | 48.2 | Plus |
CG33253-PB | 414 | CG33253-PB | 33..315 | 5..288 | 692 | 48.2 | Plus |
CG33253-PC | 302 | CG33253-PC | 3..250 | 41..288 | 658 | 50.4 | Plus |