Clone BS13754 Report

Search the DGRC for BS13754

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptFancl-RA
Protein status:BS13754.pep: full length peptide match
Sequenced Size:1178

Clone Sequence Records

BS13754.complete Sequence

1178 bp assembled on 2009-12-07

GenBank Submission: KX802455

> BS13754.complete
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGCAAC
CATCGCCCATCAGCAGCAAACACAAAACACGACTGTTCCCTCTCAAGGAT
CGCGTCTACTTGAAGCTGACCATCGCGGATCCCTTTGCCTGCATTGCATC
CATGTCGCTAAAGATCATTGGGCCCACGGAAGAGGTGGCCCGCCTGCGCC
ACGTTCTCAGCGATGGTCTAAGTAACTGGGACTCCGAAATGAACATTCAC
AAGAACCTACTCCGAATGTTCGACTTGTGCTACTTTCCCATGCCAGACTG
GTCGGATGGACCCAAGCTGGATGAAGAGGACAACGAAGAGCTGCGCTGTA
ACATTTGCTTTGCCTATCGCCTGGATGGTGGCGAGGTGCCCCTCGTCTCC
TGCGACAATGCCAAATGTGTGCTAAAGTGCCATGCCGTCTGTTTGGAGGA
GTGGTTTAAGACTCTGATGGATGGCAAGACCTTTCTGGAGGTCTCCTTCG
GCCAGTGTCCCTTCTGCAAGGCGAAGCTGTCCACCTCATTTGCGGCACTT
TTAAATGATTGAAAGCTTTCTAGACCAT

BS13754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Fancl-RA 1146 CG12812-PA 1..1146 17..1162 5730 100 Plus
Fancl-RB 1143 CG12812-PB 1..1143 17..1162 5650 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Fancl-RA 1248 CG12812-RA 64..1211 17..1164 5740 100 Plus
Fancl-RB 1245 CG12812-RB 64..1208 17..1164 5660 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10051643..10052640 1123..126 4990 100 Minus
3R 32079331 3R 10052695..10052806 128..17 560 100 Minus
3R 32079331 3R 10051545..10051586 1164..1123 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:42:43 has no hits.

BS13754.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:53 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 1..1146 17..1162 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:41 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 41..1185 17..1161 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:29 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 64..1208 17..1161 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:47 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 41..1185 17..1161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:03 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 64..1208 17..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:03 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10051548..10051585 1124..1161 100 <- Minus
3R 10051643..10052638 128..1123 100 <- Minus
3R 10052696..10052806 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:29 Download gff for BS13754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5877270..5877307 1124..1161 100 <- Minus
arm_3R 5877365..5878360 128..1123 100 <- Minus
arm_3R 5878418..5878528 17..127 100   Minus

BS13754.3prime Sequence

571 bp (563 high quality bases) assembled on 2006-10-13

> BS13754.3prime
ATGGTCTAGAAAGCTTTCAATCATTTAAAAGTGCCGCAAATGAGGTGGAC
AGCTTCGCCTTGCAGAAGGGACACTGGCCGAAGGAGACCTCCAGAAAGGT
CTTGCCATCCATCAGAGTCTTAAACCACTCCTCCAAACAGACGGCATGGC
ACTTTAGCACACATTTGGCATTGTCGCAGGAGACGAGGGGCACCTCGCCA
CCATCCAGGCGATAGGCAAAGCAAATGTTACAGCGCAGCTCTTCGTTGTC
CTCTTCATCCAGCTTGGGTCCATCCGACCAGTCTGGCATGGGAAAGTAGC
ACAAGTCGAACATTCGGAGTAGGTTCTTGTGAATGTTCATTTCGGAGTCC
CAGTTACTTAGACCATCGCTGAGAACGTGGCGCAGGCGGGCCACCTCTTC
CGTGGGCCCAATGATCTTTAGCGACATGGATGCAATGCAGGCAAAGGGAT
CCGCGATGGTCAGCTTCAAGTAGACGCGATCCTTGAGAGGGAACAGTCGT
GTTTTGTGTTTGCTGCTGATGGGCGATGGTTGCAGCACATGACAAAGCTC
GTCGATATCCATGAAGTTGTC

BS13754.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12812-PA 1146 CG12812-RA 592..1146 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fancl-RA 1248 CG12812-RA 655..1211 571..15 2785 100 Minus
Fancl-RB 1245 CG12812-RB 655..1208 571..15 2730 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10051643..10052158 56..571 2580 100 Plus
3R 32079331 3R 10051545..10051586 15..56 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:02:20 has no hits.

BS13754.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:43 Download gff for BS13754.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12812-PA 592..1146 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:35:39 Download gff for BS13754.3prime
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 655..1222 1..571 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:16 Download gff for BS13754.3prime
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 655..1222 1..571 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:16 Download gff for BS13754.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10051534..10051585 1..55 92 <- Plus
3R 10051643..10052158 56..571 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:35:39 Download gff for BS13754.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5877256..5877307 1..55 92 <- Plus
arm_3R 5877365..5877880 56..571 100   Plus

BS13754.5prime Sequence

675 bp (554 high quality bases) assembled on 2006-10-13

> BS13754.5prime
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGGCAC
CTTCGCCCATCAGCAGCAAACACAA

BS13754.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12812-PA 1146 CG12812-RA 1..659 17..675 3220 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Fancl-RB 1245 CG12812-RB 64..722 17..675 3250 99.5 Plus
Fancl-RA 1248 CG12812-RA 64..722 17..675 3250 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10052091..10052640 675..126 2705 99.5 Minus
3R 32079331 3R 10052695..10052806 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:08:50 has no hits.

BS13754.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:44 Download gff for BS13754.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12812-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:18 Download gff for BS13754.5prime
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 64..720 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:52 Download gff for BS13754.5prime
Subject Subject Range Query Range Percent Splice Strand
Fancl-RA 64..720 17..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:52 Download gff for BS13754.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10052093..10052638 128..673 99 <- Minus
3R 10052696..10052806 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:18 Download gff for BS13754.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5877815..5878360 128..673 99 <- Minus
arm_3R 5878418..5878528 17..127 100   Minus

BS13754.pep Sequence

Translation from 16 to 1161

> BS13754.pep
MESNEDVERLLCQKYPGLAAELQPSGACIIRGVLGSEDTWRRLKLYLPHH
PALHGFQLYVQESLEYKLYTSANLKLQDDWLLEDFLDHLPKILPAQKAPT
VPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLEL
KIPSLLLLDHSLPDCVSLGEMLTKSAGNLEEALNLFRKLLEDLRPFYDNF
MDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKI
IGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPK
LDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL
MDGKTFLEVSFGQCPFCKAKLSTSFAALLND*

BS13754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Fancl-PA 381 CG12812-PA 1..381 1..381 2043 100 Plus
Fancl-PB 380 CG12812-PB 1..380 1..381 2026 99.7 Plus