Clone Sequence Records
BS13754.complete Sequence
1178 bp assembled on 2009-12-07
GenBank Submission: KX802455
> BS13754.complete
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGCAAC
CATCGCCCATCAGCAGCAAACACAAAACACGACTGTTCCCTCTCAAGGAT
CGCGTCTACTTGAAGCTGACCATCGCGGATCCCTTTGCCTGCATTGCATC
CATGTCGCTAAAGATCATTGGGCCCACGGAAGAGGTGGCCCGCCTGCGCC
ACGTTCTCAGCGATGGTCTAAGTAACTGGGACTCCGAAATGAACATTCAC
AAGAACCTACTCCGAATGTTCGACTTGTGCTACTTTCCCATGCCAGACTG
GTCGGATGGACCCAAGCTGGATGAAGAGGACAACGAAGAGCTGCGCTGTA
ACATTTGCTTTGCCTATCGCCTGGATGGTGGCGAGGTGCCCCTCGTCTCC
TGCGACAATGCCAAATGTGTGCTAAAGTGCCATGCCGTCTGTTTGGAGGA
GTGGTTTAAGACTCTGATGGATGGCAAGACCTTTCTGGAGGTCTCCTTCG
GCCAGTGTCCCTTCTGCAAGGCGAAGCTGTCCACCTCATTTGCGGCACTT
TTAAATGATTGAAAGCTTTCTAGACCAT
BS13754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fancl-RA | 1146 | CG12812-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Fancl-RB | 1143 | CG12812-PB | 1..1143 | 17..1162 | 5650 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fancl-RA | 1248 | CG12812-RA | 64..1211 | 17..1164 | 5740 | 100 | Plus |
Fancl-RB | 1245 | CG12812-RB | 64..1208 | 17..1164 | 5660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10051643..10052640 | 1123..126 | 4990 | 100 | Minus |
3R | 32079331 | 3R | 10052695..10052806 | 128..17 | 560 | 100 | Minus |
3R | 32079331 | 3R | 10051545..10051586 | 1164..1123 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:43 has no hits.
BS13754.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:53 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 1..1146 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:41 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 41..1185 | 17..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:29 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 64..1208 | 17..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:47 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 41..1185 | 17..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:03 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 64..1208 | 17..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:03 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10051548..10051585 | 1124..1161 | 100 | <- | Minus |
3R | 10051643..10052638 | 128..1123 | 100 | <- | Minus |
3R | 10052696..10052806 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:29 Download gff for
BS13754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5877270..5877307 | 1124..1161 | 100 | <- | Minus |
arm_3R | 5877365..5878360 | 128..1123 | 100 | <- | Minus |
arm_3R | 5878418..5878528 | 17..127 | 100 | | Minus |
BS13754.3prime Sequence
571 bp (563 high quality bases) assembled on 2006-10-13
> BS13754.3prime
ATGGTCTAGAAAGCTTTCAATCATTTAAAAGTGCCGCAAATGAGGTGGAC
AGCTTCGCCTTGCAGAAGGGACACTGGCCGAAGGAGACCTCCAGAAAGGT
CTTGCCATCCATCAGAGTCTTAAACCACTCCTCCAAACAGACGGCATGGC
ACTTTAGCACACATTTGGCATTGTCGCAGGAGACGAGGGGCACCTCGCCA
CCATCCAGGCGATAGGCAAAGCAAATGTTACAGCGCAGCTCTTCGTTGTC
CTCTTCATCCAGCTTGGGTCCATCCGACCAGTCTGGCATGGGAAAGTAGC
ACAAGTCGAACATTCGGAGTAGGTTCTTGTGAATGTTCATTTCGGAGTCC
CAGTTACTTAGACCATCGCTGAGAACGTGGCGCAGGCGGGCCACCTCTTC
CGTGGGCCCAATGATCTTTAGCGACATGGATGCAATGCAGGCAAAGGGAT
CCGCGATGGTCAGCTTCAAGTAGACGCGATCCTTGAGAGGGAACAGTCGT
GTTTTGTGTTTGCTGCTGATGGGCGATGGTTGCAGCACATGACAAAGCTC
GTCGATATCCATGAAGTTGTC
BS13754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12812-PA | 1146 | CG12812-RA | 592..1146 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fancl-RA | 1248 | CG12812-RA | 655..1211 | 571..15 | 2785 | 100 | Minus |
Fancl-RB | 1245 | CG12812-RB | 655..1208 | 571..15 | 2730 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10051643..10052158 | 56..571 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 10051545..10051586 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:02:20 has no hits.
BS13754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:43 Download gff for
BS13754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12812-PA | 592..1146 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:35:39 Download gff for
BS13754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 655..1222 | 1..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:16 Download gff for
BS13754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 655..1222 | 1..571 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:16 Download gff for
BS13754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10051534..10051585 | 1..55 | 92 | <- | Plus |
3R | 10051643..10052158 | 56..571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:35:39 Download gff for
BS13754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5877256..5877307 | 1..55 | 92 | <- | Plus |
arm_3R | 5877365..5877880 | 56..571 | 100 | | Plus |
BS13754.5prime Sequence
675 bp (554 high quality bases) assembled on 2006-10-13
> BS13754.5prime
GAAGTTATCAGTCGACATGGAAAGTAACGAAGATGTAGAGCGCCTTCTGT
GTCAAAAGTATCCTGGTCTGGCAGCGGAGCTTCAGCCAAGTGGAGCGTGC
ATCATCAGAGGAGTTTTGGGCAGTGAGGATACATGGCGCCGCCTTAAACT
CTATCTGCCACACCACCCAGCTCTTCATGGTTTCCAGCTCTACGTCCAGG
AAAGCTTGGAGTACAAGCTGTACACATCGGCTAATCTCAAGTTACAGGAC
GATTGGCTGCTGGAGGATTTTCTGGACCATTTGCCAAAGATTCTTCCTGC
CCAAAAAGCCCCAACAGTGCCAAAGGAACTATGTCGGGAGGGGAACATAT
ATTACGATATCCTGGCCTTGTACAAGTCAAACGAGTACTGCCTGCAAGTG
GACGAGGCCTGTTCCATGATTCGTTTCAGCGAATTCACCGACTTCGAGCA
GCATTATCTGGAGCTTAAGATCCCGTCTCTTCTCTTGCTTGATCACAGTT
TGCCCGACTGCGTATCGCTGGGTGAAATGCTGACCAAGAGTGCTGGAAAC
CTAGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCC
CTTCTACGACAACTTCATGGATATCGACGAGCTTTGTCATGTGCTGGCAC
CTTCGCCCATCAGCAGCAAACACAA
BS13754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12812-PA | 1146 | CG12812-RA | 1..659 | 17..675 | 3220 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fancl-RB | 1245 | CG12812-RB | 64..722 | 17..675 | 3250 | 99.5 | Plus |
Fancl-RA | 1248 | CG12812-RA | 64..722 | 17..675 | 3250 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10052091..10052640 | 675..126 | 2705 | 99.5 | Minus |
3R | 32079331 | 3R | 10052695..10052806 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:08:50 has no hits.
BS13754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:44 Download gff for
BS13754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12812-PA | 1..657 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:18 Download gff for
BS13754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 64..720 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:52 Download gff for
BS13754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fancl-RA | 64..720 | 17..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:52 Download gff for
BS13754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10052093..10052638 | 128..673 | 99 | <- | Minus |
3R | 10052696..10052806 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:18 Download gff for
BS13754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5877815..5878360 | 128..673 | 99 | <- | Minus |
arm_3R | 5878418..5878528 | 17..127 | 100 | | Minus |
BS13754.pep Sequence
Translation from 16 to 1161
> BS13754.pep
MESNEDVERLLCQKYPGLAAELQPSGACIIRGVLGSEDTWRRLKLYLPHH
PALHGFQLYVQESLEYKLYTSANLKLQDDWLLEDFLDHLPKILPAQKAPT
VPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLEL
KIPSLLLLDHSLPDCVSLGEMLTKSAGNLEEALNLFRKLLEDLRPFYDNF
MDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKI
IGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPK
LDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL
MDGKTFLEVSFGQCPFCKAKLSTSFAALLND*
BS13754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fancl-PA | 381 | CG12812-PA | 1..381 | 1..381 | 2043 | 100 | Plus |
Fancl-PB | 380 | CG12812-PB | 1..380 | 1..381 | 2026 | 99.7 | Plus |